ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 252 1e-63
2dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic D... 252 1e-63
3dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic D... 252 1e-63
4gb|AY111270.1| Zea mays CL24997_1 mRNA sequence 129 1e-26
5gb|AY242830.1| Bradyrhizobium japonicum strain 3I1b6 RNA polymer... 50 0.008
6dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 48 0.030
7ref|XM_550065.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.48
8gb|AC110053.3| Homo sapiens chromosome 8, clone CTD-3145H4, comp... 44 0.48
9gb|AC107904.6| Homo sapiens chromosome 8, clone RP11-644K4, comp... 44 0.48
10gb|AC104637.5| Homo sapiens 3 BAC RP11-387L24 (Roswell Park Canc... 44 0.48
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
12dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 44 0.48
13dbj|AP003250.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
14dbj|AK110482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.48
15gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, co... 42 1.9
16gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 1.9
17gb|AY280634.1| Uncultured bacterium cosmid pbiov sequence 42 1.9
18emb|BX548019.36| Zebrafish DNA sequence from clone DKEY-20D1 in ... 42 1.9
19gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.9
20emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.9
21gb|AC084017.14| Homo sapiens 3 BAC RP11-208P4 (Roswell Park Canc... 42 1.9
22emb|BX571699.10| Zebrafish DNA sequence from clone DKEYP-116G9 i... 42 1.9
23gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.9
24gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 7.4
25gb|BC103835.1| Homo sapiens PR domain containing 1, with ZNF dom... 40 7.4
26ref|XM_632430.1| Dictyostelium discoideum putative AGC family pr... 40 7.4
27ref|XM_469195.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.4
28ref|XM_469193.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.4
29gb|AC153526.13| Mus musculus 10 BAC RP23-383C2 (Roswell Park Can... 40 7.4
30gb|BC103833.1| Homo sapiens PR domain containing 1, with ZNF dom... 40 7.4
31gb|AC145388.2| Oryza sativa chromosome 3 BAC OSJNBb0036M02 genom... 40 7.4
32gb|BC103834.1| Homo sapiens PR domain containing 1, with ZNF dom... 40 7.4
33gb|BC103832.1| Homo sapiens PR domain containing 1, with ZNF dom... 40 7.4
34gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 7.4
35gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 7.4
36ref|NM_182907.1| Homo sapiens PR domain containing 1, with ZNF d... 40 7.4
37ref|NM_001198.2| Homo sapiens PR domain containing 1, with ZNF d... 40 7.4
38ref|XM_654937.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 7.4
39gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.4
40gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 genom... 40 7.4
41emb|CR392364.6| Zebrafish DNA sequence from clone CH211-230I4 in... 40 7.4
42ref|XM_811367.1| Trypanosoma cruzi strain CL Brener mucin-associ... 40 7.4
43gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 7.4
44gb|AY198415.1| Homo sapiens PR domain-containing protein 1 beta ... 40 7.4
45gb|AY198414.1| Homo sapiens PR domain-containing protein 1 alpha... 40 7.4
46emb|AL353148.8| Human DNA sequence from clone RP11-298H24 on chr... 40 7.4
47gb|AY327039.1| Oryza sativa (japonica cultivar-group) iron trans... 40 7.4
48emb|AL022067.1|HS134E15 Human DNA sequence from clone RP1-134E15... 40 7.4
49emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.4
50emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 7.4
51gb|AC119734.7| Homo sapiens 3 BAC RP11-305D6 (Roswell Park Cance... 40 7.4
52emb|AL832963.1|HSM804274 Homo sapiens mRNA; cDNA DKFZp666P0310 (... 40 7.4
53emb|BX571695.8| Zebrafish DNA sequence from clone DKEY-49J15 in ... 40 7.4
54gb|AE012110.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 7.4
55gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 7.4
56gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 7.4
57gb|AC010364.6| Homo sapiens chromosome 5 clone CTD-2042D5, compl... 40 7.4
58tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome 40 7.4
59dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
60gb|AC153525.12| Mus musculus 10 BAC RP23-440I21 (Roswell Park Ca... 40 7.4
61gb|AF373287.3| Ralstonia eutropha half-amidase, imidase, putativ... 40 7.4
62dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 7.4
63dbj|AK107681.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
64gb|AF016017.1|AF016017 Mycocepurus goeldii cytochrome oxidase I ... 40 7.4
65emb|AL121656.2|CNS01DS6 BAC sequence from the SPG4 candidate reg... 40 7.4
66gb|AC006406.1|AC006406 Homo sapiens, clone hRPK.25_A_1, complete... 40 7.4
67gb|BC084348.1| Xenopus laevis hypothetical LOC495267, mRNA (cDNA... 40 7.4
68gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.4
69gb|AF084199.1|AF084199 Homo sapiens beta-interferon gene positiv... 40 7.4
70emb|X97257.1|PRVULGNS Suid herpesvirus 1 strain Kaplan UL[5,6,7,... 40 7.4
71emb|CT009540.10| M.truncatula DNA sequence from clone MTH2-39B3 ... 40 7.4
72dbj|AB070226.1| Oryza sativa OsIRT1 mRNA for iron regulated meta... 40 7.4 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  252 bits (127), Expect = 1e-63
 Identities = 145/151 (96%)
 Strand = Plus / Plus

                                                                            
Query: 354      ggctacgacgcgatgggcttggagtggtggaggaaggcggcggagcagagcacggtggtg 413
                ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 18045395 ggctaggacgcgacgggcttggagtggtggaggaaggcggcggagcagagcacggcggtg 18045454

                                                                            
Query: 414      acgacggcgaagaggccgagcgcgaacatcagcgacagcccggccaccgccagatccagc 473
                ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 18045455 acgacggcgaagaggccgagcgcgaccaccagcgacagcccggccaccgccagatccagc 18045514

                                               
Query: 474      aacagctgcgcgccgtggaacaccgccccca 504
                | |||||||||||||||||||||||||||||
Sbjct: 18045515 atcagctgcgcgccgtggaacaccgccccca 18045545
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>dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0026C08
          Length = 155316

 Score =  252 bits (127), Expect = 1e-63
 Identities = 145/151 (96%)
 Strand = Plus / Plus

                                                                         
Query: 354   ggctacgacgcgatgggcttggagtggtggaggaaggcggcggagcagagcacggtggtg 413
             ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 38517 ggctaggacgcgacgggcttggagtggtggaggaaggcggcggagcagagcacggcggtg 38576

                                                                         
Query: 414   acgacggcgaagaggccgagcgcgaacatcagcgacagcccggccaccgccagatccagc 473
             ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 38577 acgacggcgaagaggccgagcgcgaccaccagcgacagcccggccaccgccagatccagc 38636

                                            
Query: 474   aacagctgcgcgccgtggaacaccgccccca 504
             | |||||||||||||||||||||||||||||
Sbjct: 38637 atcagctgcgcgccgtggaacaccgccccca 38667
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>dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1509_C06
          Length = 113436

 Score =  252 bits (127), Expect = 1e-63
 Identities = 145/151 (96%)
 Strand = Plus / Plus

                                                                         
Query: 354   ggctacgacgcgatgggcttggagtggtggaggaaggcggcggagcagagcacggtggtg 413
             ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 97049 ggctaggacgcgacgggcttggagtggtggaggaaggcggcggagcagagcacggcggtg 97108

                                                                         
Query: 414   acgacggcgaagaggccgagcgcgaacatcagcgacagcccggccaccgccagatccagc 473
             ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 97109 acgacggcgaagaggccgagcgcgaccaccagcgacagcccggccaccgccagatccagc 97168

                                            
Query: 474   aacagctgcgcgccgtggaacaccgccccca 504
             | |||||||||||||||||||||||||||||
Sbjct: 97169 atcagctgcgcgccgtggaacaccgccccca 97199
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>gb|AY111270.1| Zea mays CL24997_1 mRNA sequence
          Length = 764

 Score =  129 bits (65), Expect = 1e-26
 Identities = 125/145 (86%)
 Strand = Plus / Minus

                                                                       
Query: 368 gggcttggagtggtggaggaaggcggcggagcagagcacggtggtgacgacggcgaagag 427
           ||||||||||||||||||||| || ||||||||||||| ||| |||| || |||||||| 
Sbjct: 449 gggcttggagtggtggaggaacgccgcggagcagagcaaggtagtgatgagggcgaagaa 390

                                                                       
Query: 428 gccgagcgcgaacatcagcgacagcccggccaccgccagatccagcaacagctgcgcgcc 487
            |||||||| | |  |||||||| ||||||||||||||||||||||   |||||||||||
Sbjct: 389 cccgagcgccaccgccagcgacatcccggccaccgccagatccagcgctagctgcgcgcc 330

                                    
Query: 488 gtggaacaccgcccccagcgacatc 512
           |||||||| | | ||||||| ||||
Sbjct: 329 gtggaacaacacgcccagcgccatc 305



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 152 ggtacaagagcctccagctatcacctgatatgtgcaat 189
           |||||||||||||  |||||||||||||| ||||||||
Sbjct: 635 ggtacaagagcctatagctatcacctgatgtgtgcaat 598
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>gb|AY242830.1| Bradyrhizobium japonicum strain 3I1b6 RNA polymerase beta subunit
           (rpoB) gene, complete cds
          Length = 4119

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 425 gaggccgagcgcgaacatcagcgac 449
           |||||||||||||||||||||||||
Sbjct: 666 gaggccgagcgcgaacatcagcgac 642
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 426     aggccgagcgcgaacatcagcgac 449
               ||||||||||||||||||||||||
Sbjct: 5955232 aggccgagcgcgaacatcagcgac 5955255
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>ref|XM_550065.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2291

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 367  tgggcttggagtggtggaggaa 388
            ||||||||||||||||||||||
Sbjct: 1134 tgggcttggagtggtggaggaa 1113
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>gb|AC110053.3| Homo sapiens chromosome 8, clone CTD-3145H4, complete sequence
          Length = 142225

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 31     aatgtacagtacatttataaacaata 56
              |||||||||| |||||||||||||||
Sbjct: 122942 aatgtacagttcatttataaacaata 122967
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>gb|AC107904.6| Homo sapiens chromosome 8, clone RP11-644K4, complete sequence
          Length = 171676

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 31    aatgtacagtacatttataaacaata 56
             |||||||||| |||||||||||||||
Sbjct: 76451 aatgtacagttcatttataaacaata 76426
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>gb|AC104637.5| Homo sapiens 3 BAC RP11-387L24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 99960

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 42    catttataaacaataagatgtagaagattt 71
             ||||| |||||||||||| |||||||||||
Sbjct: 87402 catttgtaaacaataagaagtagaagattt 87431
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 367     tgggcttggagtggtggaggaa 388
               ||||||||||||||||||||||
Sbjct: 2055367 tgggcttggagtggtggaggaa 2055346
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 449     cagcccggccaccgccagatcc 470
               ||||||||||||||||||||||
Sbjct: 1841220 cagcccggccaccgccagatcc 1841199
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>dbj|AP003250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0443D08
          Length = 146670

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 367    tgggcttggagtggtggaggaa 388
              ||||||||||||||||||||||
Sbjct: 117945 tgggcttggagtggtggaggaa 117924
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>dbj|AK110482.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-167-A07, full
            insert sequence
          Length = 2291

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 367  tgggcttggagtggtggaggaa 388
            ||||||||||||||||||||||
Sbjct: 1134 tgggcttggagtggtggaggaa 1113
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>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence
          Length = 198636

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 158   agagcctccagctatcacctg 178
             |||||||||||||||||||||
Sbjct: 70824 agagcctccagctatcacctg 70844
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 425     gaggccgagcgcgaacatcagcgac 449
               ||||||||| |||||||||||||||
Sbjct: 1481062 gaggccgagggcgaacatcagcgac 1481038
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>gb|AY280634.1| Uncultured bacterium cosmid pbiov sequence
          Length = 37440

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 413  gacgacggcgaagaggccgag 433
            |||||||||||||||||||||
Sbjct: 3111 gacgacggcgaagaggccgag 3091
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>emb|BX548019.36| Zebrafish DNA sequence from clone DKEY-20D1 in linkage group 6,
             complete sequence
          Length = 202848

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 54    ataagatgtagaagatttcaa 74
             |||||||||||||||||||||
Sbjct: 41083 ataagatgtagaagatttcaa 41103
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 429     ccgagcgcgaacatcagcgac 449
               |||||||||||||||||||||
Sbjct: 3547407 ccgagcgcgaacatcagcgac 3547427
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>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16
          Length = 349635

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 425    gaggccgagcgcgaacatcagcgac 449
              ||||||||| |||||||||||||||
Sbjct: 196529 gaggccgagggcgaacatcagcgac 196553
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>gb|AC084017.14| Homo sapiens 3 BAC RP11-208P4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167102

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 118    agaacagcttaagtagacatgacaa 142
              |||||||||||||||||| ||||||
Sbjct: 102832 agaacagcttaagtagacgtgacaa 102808
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>emb|BX571699.10| Zebrafish DNA sequence from clone DKEYP-116G9 in linkage group 6,
             complete sequence
          Length = 173467

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 54    ataagatgtagaagatttcaa 74
             |||||||||||||||||||||
Sbjct: 98604 ataagatgtagaagatttcaa 98584
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 429     ccgagcgcgaacatcagcgac 449
               |||||||||||||||||||||
Sbjct: 2635015 ccgagcgcgaacatcagcgac 2634995
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 443     cagcgacagcccggccaccgccag 466
               |||| |||||||||||||||||||
Sbjct: 1447998 cagccacagcccggccaccgccag 1448021
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>gb|BC103835.1| Homo sapiens PR domain containing 1, with ZNF domain, transcript
           variant 2, mRNA (cDNA clone MGC:118925 IMAGE:40001923),
           complete cds
          Length = 2999

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 368 gggcttggagtggtggagga 387
           ||||||||||||||||||||
Sbjct: 745 gggcttggagtggtggagga 726
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>ref|XM_632430.1| Dictyostelium discoideum putative AGC family protein kinase
           (DDB0220700), partial mRNA
          Length = 1389

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  atttcaagaagatgaaccaa 87
           ||||||||||||||||||||
Sbjct: 849 atttcaagaagatgaaccaa 868
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>ref|XM_469195.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1405

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 412 tgacgacggcgaagaggccg 431
           ||||||||||||||||||||
Sbjct: 353 tgacgacggcgaagaggccg 334
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>ref|XM_469193.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1257

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 412 tgacgacggcgaagaggccg 431
           ||||||||||||||||||||
Sbjct: 298 tgacgacggcgaagaggccg 279
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>gb|AC153526.13| Mus musculus 10 BAC RP23-383C2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 200117

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    agacaatgtacagtacattt 46
             ||||||||||||||||||||
Sbjct: 44471 agacaatgtacagtacattt 44452
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>gb|BC103833.1| Homo sapiens PR domain containing 1, with ZNF domain, transcript
           variant 2, mRNA (cDNA clone MGC:118923 IMAGE:40001921),
           complete cds
          Length = 3001

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 368 gggcttggagtggtggagga 387
           ||||||||||||||||||||
Sbjct: 745 gggcttggagtggtggagga 726
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>gb|AC145388.2| Oryza sativa chromosome 3 BAC OSJNBb0036M02 genomic sequence, complete
              sequence
          Length = 125380

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 412    tgacgacggcgaagaggccg 431
              ||||||||||||||||||||
Sbjct: 102771 tgacgacggcgaagaggccg 102752
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>gb|BC103834.1| Homo sapiens PR domain containing 1, with ZNF domain, transcript
           variant 2, mRNA (cDNA clone MGC:118924 IMAGE:40001922),
           complete cds
          Length = 2999

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 368 gggcttggagtggtggagga 387
           ||||||||||||||||||||
Sbjct: 745 gggcttggagtggtggagga 726
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>gb|BC103832.1| Homo sapiens PR domain containing 1, with ZNF domain, transcript
           variant 2, mRNA (cDNA clone MGC:118922 IMAGE:40001920),
           complete cds
          Length = 2999

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 368 gggcttggagtggtggagga 387
           ||||||||||||||||||||
Sbjct: 745 gggcttggagtggtggagga 726
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 437     gaacatcagcgacagcccggccac 460
               ||||||||||||||||||| ||||
Sbjct: 1048721 gaacatcagcgacagcccgaccac 1048698
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 437     gaacatcagcgacagcccggccac 460
               ||||||||||||||||||| ||||
Sbjct: 2517039 gaacatcagcgacagcccgaccac 2517062
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>ref|NM_182907.1| Homo sapiens PR domain containing 1, with ZNF domain (PRDM1),
           transcript variant 2, mRNA
          Length = 4675

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 368 gggcttggagtggtggagga 387
           ||||||||||||||||||||
Sbjct: 754 gggcttggagtggtggagga 735
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>ref|NM_001198.2| Homo sapiens PR domain containing 1, with ZNF domain (PRDM1),
            transcript variant 1, mRNA
          Length = 5165

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  gggcttggagtggtggagga 387
            ||||||||||||||||||||
Sbjct: 1244 gggcttggagtggtggagga 1225
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>ref|XM_654937.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2425.2), mRNA
          Length = 2388

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 407  ggtggtgacgacggcgaaga 426
            ||||||||||||||||||||
Sbjct: 2246 ggtggtgacgacggcgaaga 2227
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 412      tgacgacggcgaagaggccg 431
                ||||||||||||||||||||
Sbjct: 26000315 tgacgacggcgaagaggccg 26000334
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>gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence,
            complete sequence
          Length = 140720

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 412  tgacgacggcgaagaggccg 431
            ||||||||||||||||||||
Sbjct: 7605 tgacgacggcgaagaggccg 7586
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>emb|CR392364.6| Zebrafish DNA sequence from clone CH211-230I4 in linkage group 17,
             complete sequence
          Length = 91506

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    tacagtacatttataaacaa 54
             ||||||||||||||||||||
Sbjct: 21593 tacagtacatttataaacaa 21612
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>ref|XM_811367.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein
           (MASP) (Tc00.1047053509217.90) partial mRNA
          Length = 1140

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 459 accgccagatccagcaacag 478
           ||||||||||||||||||||
Sbjct: 438 accgccagatccagcaacag 457
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 425     gaggccgagcgcgaacatcagcga 448
               ||||||||| ||||||||||||||
Sbjct: 1736824 gaggccgagggcgaacatcagcga 1736801
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>gb|AY198415.1| Homo sapiens PR domain-containing protein 1 beta (PRDM1) mRNA,
           complete cds
          Length = 4675

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 368 gggcttggagtggtggagga 387
           ||||||||||||||||||||
Sbjct: 754 gggcttggagtggtggagga 735
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>gb|AY198414.1| Homo sapiens PR domain-containing protein 1 alpha (PRDM1) mRNA,
            complete cds
          Length = 5165

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  gggcttggagtggtggagga 387
            ||||||||||||||||||||
Sbjct: 1244 gggcttggagtggtggagga 1225
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>emb|AL353148.8| Human DNA sequence from clone RP11-298H24 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 181308

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tacagtacatttataaacaa 54
             ||||||||||||||||||||
Sbjct: 85011 tacagtacatttataaacaa 84992
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>gb|AY327039.1| Oryza sativa (japonica cultivar-group) iron transporter Fe3 mRNA,
           complete cds
          Length = 1380

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 412 tgacgacggcgaagaggccg 431
           ||||||||||||||||||||
Sbjct: 327 tgacgacggcgaagaggccg 308
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>emb|AL022067.1|HS134E15 Human DNA sequence from clone RP1-134E15 on chromosome 6q21 Contains
             the 3' part of the PRDM1 gene for PR domain containing 1
             with ZNF domain and the 3' part of the APG5L gene for APG5
             autophagy 5-like (S. cerevisiae), complete sequence
          Length = 177163

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   gggcttggagtggtggagga 387
             ||||||||||||||||||||
Sbjct: 10357 gggcttggagtggtggagga 10338
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 437     gaacatcagcgacagcccggccac 460
               ||||||||||||||||||| ||||
Sbjct: 1865610 gaacatcagcgacagcccgaccac 1865587
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 439    acatcagcgacagcccggcc 458
              ||||||||||||||||||||
Sbjct: 825084 acatcagcgacagcccggcc 825103
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>gb|AC119734.7| Homo sapiens 3 BAC RP11-305D6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 109642

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    taagtagacatgacaagtaa 146
              ||||||||||||||||||||
Sbjct: 107362 taagtagacatgacaagtaa 107343
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>emb|AL832963.1|HSM804274 Homo sapiens mRNA; cDNA DKFZp666P0310 (from clone DKFZp666P0310)
          Length = 4274

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  gggcttggagtggtggagga 387
            ||||||||||||||||||||
Sbjct: 1178 gggcttggagtggtggagga 1159
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>emb|BX571695.8| Zebrafish DNA sequence from clone DKEY-49J15 in linkage group 3,
             complete sequence
          Length = 117582

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    agtacatttataaacaataa 57
             ||||||||||||||||||||
Sbjct: 83640 agtacatttataaacaataa 83659
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>gb|AE012110.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 18 of
            460 of the complete genome
          Length = 11320

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 467  atccagcaacagctgcgcgc 486
            ||||||||||||||||||||
Sbjct: 3867 atccagcaacagctgcgcgc 3886
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 413    gacgacggcgaagaggccga 432
              ||||||||||||||||||||
Sbjct: 476172 gacgacggcgaagaggccga 476191
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 467    atccagcaacagctgcgcgc 486
              ||||||||||||||||||||
Sbjct: 191105 atccagcaacagctgcgcgc 191124
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>gb|AC010364.6| Homo sapiens chromosome 5 clone CTD-2042D5, complete sequence
          Length = 163400

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 122   cagcttaagtagacatgacaagta 145
             |||| |||||||||||||||||||
Sbjct: 62637 cagcctaagtagacatgacaagta 62614
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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 318   ccgagggggccgtggacttggcgg 341
             ||||||||||||||||||| ||||
Sbjct: 84434 ccgagggggccgtggactttgcgg 84457
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 412      tgacgacggcgaagaggccg 431
                ||||||||||||||||||||
Sbjct: 26091624 tgacgacggcgaagaggccg 26091643
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>gb|AC153525.12| Mus musculus 10 BAC RP23-440I21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 199418

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    agacaatgtacagtacattt 46
             ||||||||||||||||||||
Sbjct: 10208 agacaatgtacagtacattt 10227
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>gb|AF373287.3| Ralstonia eutropha half-amidase, imidase, putative transmembrane
            transporting protein, putative short-chain dehydrogenase,
            and putative short-chain dehydrogenase genes, complete
            cds
          Length = 6005

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 469  ccagcaacagctgcgcgccg 488
            ||||||||||||||||||||
Sbjct: 4762 ccagcaacagctgcgcgccg 4743
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 56      aagatgtagaagatttcaag 75
               ||||||||||||||||||||
Sbjct: 1165833 aagatgtagaagatttcaag 1165852
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>dbj|AK107681.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-A08, full
           insert sequence
          Length = 1405

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 412 tgacgacggcgaagaggccg 431
           ||||||||||||||||||||
Sbjct: 353 tgacgacggcgaagaggccg 334
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>gb|AF016017.1|AF016017 Mycocepurus goeldii cytochrome oxidase I (COI) gene, partial cds;
           tRNA-Leu gene, complete sequence; and cytochrome oxidase
           II (COII) gene, partial cds, mitochondrial genes
           encoding mitochondrial proteins
          Length = 560

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 63  agaagatttcaagaagatga 82
           ||||||||||||||||||||
Sbjct: 468 agaagatttcaagaagatga 449
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>emb|AL121656.2|CNS01DS6 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 367K01 of
              library CITB_978_SKB from chromosome 2 of Homo sapiens
              (Human)
          Length = 179206

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    agcttaagtagacatgacaa 142
              ||||||||||||||||||||
Sbjct: 109372 agcttaagtagacatgacaa 109391
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>gb|AC006406.1|AC006406 Homo sapiens, clone hRPK.25_A_1, complete sequence
          Length = 159115

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 122    cagcttaagtagacatgacaagta 145
              |||| |||||||||||||||||||
Sbjct: 100181 cagcctaagtagacatgacaagta 100204
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>gb|BC084348.1| Xenopus laevis hypothetical LOC495267, mRNA (cDNA clone MGC:84398
           IMAGE:7018738), complete cds
          Length = 2237

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  tgtagaagatttcaagaaga 79
           ||||||||||||||||||||
Sbjct: 735 tgtagaagatttcaagaaga 754
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 412     tgacgacggcgaagaggccg 431
               ||||||||||||||||||||
Sbjct: 4495976 tgacgacggcgaagaggccg 4495995
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>gb|AF084199.1|AF084199 Homo sapiens beta-interferon gene positive-regulatory domain I
            binding factor (BLIMP1) mRNA, complete cds
          Length = 2615

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  gggcttggagtggtggagga 387
            ||||||||||||||||||||
Sbjct: 1125 gggcttggagtggtggagga 1106
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>emb|X97257.1|PRVULGNS Suid herpesvirus 1 strain Kaplan UL[5,6,7,8,8.5,9,10,11,12,13] genes
          Length = 11059

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 318  ccgagggggccgtggacttggcgg 341
            ||||||||||||||||||| ||||
Sbjct: 6084 ccgagggggccgtggactttgcgg 6107
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>emb|CT009540.10| M.truncatula DNA sequence from clone MTH2-39B3 on chromosome 3, complete
              sequence
          Length = 127327

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     aacaatttactgcacaaaca 105
              ||||||||||||||||||||
Sbjct: 105389 aacaatttactgcacaaaca 105370
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>dbj|AB070226.1| Oryza sativa OsIRT1 mRNA for iron regulated metal transporter,
           complete cds
          Length = 1395

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 412 tgacgacggcgaagaggccg 431
           ||||||||||||||||||||
Sbjct: 327 tgacgacggcgaagaggccg 308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,380,738
Number of Sequences: 3902068
Number of extensions: 4380738
Number of successful extensions: 100420
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99019
Number of HSP's gapped (non-prelim): 1401
length of query: 548
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 525
effective length of database: 17,143,297,704
effective search space: 9000231294600
effective search space used: 9000231294600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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