ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26g22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BLT4_HORVU (P25307) BLT4 protein precursor 59 2e-09
2NLTP8_HORVU (Q43871) Nonspecific lipid-transfer protein Cw18 pre... 32 0.40
3LYST_HUMAN (Q99698) Lysosomal trafficking regulator (Beige homolog) 31 0.89
4Y580_CLOAB (Q97LI1) UPF0229 protein CAC0580 29 2.6
5VP13A_HUMAN (Q96RL7) Vacuolar protein sorting 13A (Chorein) (Cho... 29 2.6
6MINC_ECOLI (P18196) Septum site-determining protein minC 28 4.4
7MINC_ECOL6 (Q8FI31) Septum site-determining protein minC 28 4.4
8MINC_ECO57 (Q8XDN0) Septum site-determining protein minC 28 4.4
9HISX_SALPA (Q5PDP3) Histidinol dehydrogenase (EC 1.1.1.23) (HDH) 28 5.8
10PHLX_RABIT (Q05017) Phospholipase AdRab-B precursor (EC 3.1.-.-) 28 5.8
11YFNF_BACSU (O06484) Hypothetical protein yfnF 28 7.6
12ZEST_DROME (P09956) Regulatory protein zeste 27 9.9
13MINC_SHIFL (Q7UCU1) Septum site-determining protein minC 27 9.9

>BLT4_HORVU (P25307) BLT4 protein precursor|
          Length = 130

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = -3

Query: 286 TRSAPVSTALRSTDRTRAPHISSDRRLVG 200
           TRSAPVSTALRSTDRTRAPHISSDRRLVG
Sbjct: 102 TRSAPVSTALRSTDRTRAPHISSDRRLVG 130



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>NLTP8_HORVU (Q43871) Nonspecific lipid-transfer protein Cw18 precursor (LTP|
           Cw-18) (PKG2316)
          Length = 115

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 16/21 (76%), Positives = 16/21 (76%)
 Frame = -2

Query: 311 RCSGPHARYTISASVDCSKIH 249
           RC G    YTISASVDCSKIH
Sbjct: 96  RC-GVSVPYTISASVDCSKIH 115



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>LYST_HUMAN (Q99698) Lysosomal trafficking regulator (Beige homolog)|
          Length = 3801

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 121  TSSPLSLMEIITEDLFMYMYICVCDLNLPSVDRWRYG--EHVFDQWI 255
            +SSP  L+E +T+   +Y  IC+ +LNL S  + +     HVF+ ++
Sbjct: 1251 SSSPNDLLENLTQGEIIYPEICMLELNLLSASKAKLDVLAHVFESFL 1297



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>Y580_CLOAB (Q97LI1) UPF0229 protein CAC0580|
          Length = 391

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 145 EIITEDLFMYMYICVCDLNLPSVDRWRYGEHVFD 246
           E+  E++F Y+   + DLNLP++D+ +Y E V D
Sbjct: 116 EVTIEEVFSYL---LEDLNLPNLDKKKYSEIVTD 146



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>VP13A_HUMAN (Q96RL7) Vacuolar protein sorting 13A (Chorein)|
            (Chorea-acanthocytosis protein)
          Length = 3174

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = -2

Query: 317  ALRCSGPHARYTISASVDCSKIH*SNTCSPYLQRSTLGRLRSHTHIYIYMNKSSVMISMR 138
            A++C G    Y +  ++D S  +             + R+ + T  Y+  NKS   IS+ 
Sbjct: 2282 AVKCKGLKMDYQVGVTIDLSSFN-------------ITRIVTFTPFYMIKNKSKYHISVA 2328

Query: 137  ERGED 123
            E G D
Sbjct: 2329 EEGND 2333



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>MINC_ECOLI (P18196) Septum site-determining protein minC|
          Length = 231

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
 Frame = -3

Query: 295 TRATRSAPVSTALRSTDRTRAP--------HISSDRRLVG*GHIHIY 179
           T  T++  + T +RS  R  AP        H+S+   L+  G+IH+Y
Sbjct: 120 TPVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIADGNIHVY 166



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>MINC_ECOL6 (Q8FI31) Septum site-determining protein minC|
          Length = 231

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
 Frame = -3

Query: 295 TRATRSAPVSTALRSTDRTRAP--------HISSDRRLVG*GHIHIY 179
           T  T++  + T +RS  R  AP        H+S+   L+  G+IH+Y
Sbjct: 120 TPVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIADGNIHVY 166



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>MINC_ECO57 (Q8XDN0) Septum site-determining protein minC|
          Length = 231

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
 Frame = -3

Query: 295 TRATRSAPVSTALRSTDRTRAP--------HISSDRRLVG*GHIHIY 179
           T  T++  + T +RS  R  AP        H+S+   L+  G+IH+Y
Sbjct: 120 TPVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIADGNIHVY 166



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>HISX_SALPA (Q5PDP3) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 434

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 242 NTCSPYLQRSTLGRLRSHTHIYIYMNKSSVMISMRERGEDV-R*ASSTWPLTVVSVL 75
           N+CSP  QR+ L R        I    S ++ +++ RG+DV R  S+ +  T V+ L
Sbjct: 10  NSCSPEQQRALLTRPAISASDSITRTVSDILYNVKTRGDDVLREYSAKFDKTEVTAL 66



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>PHLX_RABIT (Q05017) Phospholipase AdRab-B precursor (EC 3.1.-.-)|
          Length = 1458

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -1

Query: 243  EHVLPISPAIDAW*VEVTYTYIHIHE*ILCYDLHERERGGRTLSQLYMAAHC 88
            E+V  I  A+D    E+  T++++ E +    LH+ ++GGR  + L   +HC
Sbjct: 1227 EYVQHIQQALDVLYEELPRTFVNVVEVMELAGLHQ-DQGGRCATLLAAQSHC 1277



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>YFNF_BACSU (O06484) Hypothetical protein yfnF|
          Length = 303

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 160 DLFMYMYICVCDLNLPSVD--RWRYGEHVF 243
           D    ++  VCD+  P V+   W YG+H F
Sbjct: 197 DYMSELFPNVCDITTPGVNIGHWNYGQHTF 226



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>ZEST_DROME (P09956) Regulatory protein zeste|
          Length = 574

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 234 LPISPAIDAW*VEVTYTYIHIHE*ILCYDLHERER 130
           LP++P   A   EV YT  H+HE ++  D+  R++
Sbjct: 49  LPLTPRFTAEEKEVLYTLFHLHEEVI--DIKHRKK 81



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>MINC_SHIFL (Q7UCU1) Septum site-determining protein minC|
          Length = 231

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
 Frame = -3

Query: 286 TRSAPVSTALRSTDRTRAP--------HISSDRRLVG*GHIHIY 179
           T++  + T +RS  R  AP        H+S+   L+  G+IH+Y
Sbjct: 123 TKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIADGNIHVY 166


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,360,625
Number of Sequences: 219361
Number of extensions: 893176
Number of successful extensions: 2252
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2251
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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