>ATP5E_MAIZE (Q41898) ATP synthase epsilon chain, mitochondrial (EC 3.6.3.14)|
          Length = 70

 Score =  126 bits (317), Expect = 4e-29
 Identities = 57/69 (82%), Positives = 65/69 (94%)
 Frame = -3

Query: 347 MSAVTAAVPFWRAAGMTYIGYSNVCAALVRSCLKEPFKTELSSREKVHFSLSKWTDEKQQ 168
           MSA TAAVPFWRAAGMTYIGYSN+CAALVR+CLKEPFK+E +SREKVHFS+SKWTD KQ+
Sbjct: 1   MSATTAAVPFWRAAGMTYIGYSNICAALVRNCLKEPFKSEAASREKVHFSISKWTDGKQE 60

Query: 167 KPTVRTDEE 141
           KPTVRT+ +
Sbjct: 61  KPTVRTESD 69

>ATP5E_ARATH (Q96253) ATP synthase epsilon chain, mitochondrial (EC 3.6.3.14)|
          Length = 69

 Score =  103 bits (257), Expect = 4e-22
 Identities = 47/65 (72%), Positives = 53/65 (81%)
 Frame = -3

Query: 341 AVTAAVPFWRAAGMTYIGYSNVCAALVRSCLKEPFKTELSSREKVHFSLSKWTDEKQQKP 162
           A  AAVPFWRAAGMTYI YSN+CA +VR+CLKEP K E  +REKVHFSLSKW D K QKP
Sbjct: 1   ASNAAVPFWRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKPQKP 60

Query: 161 TVRTD 147
            +R+D
Sbjct: 61  VLRSD 65

>ATP5E_IPOBA (Q06450) ATP synthase epsilon chain, mitochondrial (EC 3.6.3.14)|
          Length = 69

 Score =  102 bits (255), Expect = 6e-22
 Identities = 46/65 (70%), Positives = 53/65 (81%)
 Frame = -3

Query: 341 AVTAAVPFWRAAGMTYIGYSNVCAALVRSCLKEPFKTELSSREKVHFSLSKWTDEKQQKP 162
           A  AAVPFWRAAGMTYI YSN+CA +VR+CLKEP++ E  SREKVHFS SKW D K QKP
Sbjct: 1   ASNAAVPFWRAAGMTYITYSNLCANMVRNCLKEPYRAEALSREKVHFSFSKWVDGKPQKP 60

Query: 161 TVRTD 147
            +R+D
Sbjct: 61  AIRSD 65

>ATP5E_HUMAN (P56381) ATP synthase epsilon chain, mitochondrial (EC 3.6.3.14)|
          Length = 50

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = -3

Query: 326 VPFWRAAGMTYIGYSNVCAALVRSCLKEPFK 234
           V +WR AG++YI YS +CA  VR  LK  FK
Sbjct: 1   VAYWRQAGLSYIRYSQICAKAVRDALKTEFK 31

>ATP5E_BOVIN (P05632) ATP synthase epsilon chain, mitochondrial (EC 3.6.3.14)|
          Length = 50

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = -3

Query: 326 VPFWRAAGMTYIGYSNVCAALVRSCLKEPFK 234
           V +WR AG++YI YS +CA  VR  LK  FK
Sbjct: 1   VAYWRQAGLSYIRYSQICAKAVRDALKTEFK 31

>ATP5E_RAT (P29418) ATP synthase epsilon chain, mitochondrial (EC 3.6.3.14)|
          Length = 50

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = -3

Query: 326 VPFWRAAGMTYIGYSNVCAALVRSCLKEPFK 234
           V +WR AG++YI +S +CA  VR  LK  FK
Sbjct: 1   VAYWRQAGLSYIRFSQICAKAVRDALKTEFK 31

>ATP5E_MOUSE (P56382) ATP synthase epsilon chain, mitochondrial (EC 3.6.3.14)|
          Length = 51

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = -3

Query: 326 VPFWRAAGMTYIGYSNVCAALVRSCLKEPFK 234
           V +WR AG++YI +S +CA  VR  LK  FK
Sbjct: 1   VAYWRQAGLSYIRFSQICAKAVRDALKTEFK 31

>ATP5E_CAEEL (P34539) Putative ATP synthase epsilon chain, mitochondrial (EC|
           3.6.3.14)
          Length = 54

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 317 WRAAGMTYIGYSNVCAALVRSCLK 246
           WRAAG+ Y+ YS + A +VR C K
Sbjct: 4   WRAAGLNYVRYSQIAAQVVRQCTK 27

>ATP5E_SCHPO (P87316) Putative ATP synthase epsilon chain, mitochondrial (EC|
           3.6.3.14)
          Length = 67

 Score = 33.5 bits (75), Expect = 0.45
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 299 TYIGYSNVCAALVRSCLKEPFKTELSSREKVHFSLSKWTDEKQQK 165
           +Y  Y+++C+  VR  LK   K E+ +     F  ++W +  Q+K
Sbjct: 10  SYSKYASICSQTVRQALKPEIKNEVKTHGDAEFLYTRWKNGAQEK 54

>ATP5E_YEAST (P21306) ATP synthase epsilon chain, mitochondrial (EC 3.6.3.14)|
          Length = 61

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 317 WRAAGMTYIGYSNVCAALVRSCLKEPFKT 231
           WR AG++Y  Y NV A  +RS LK   +T
Sbjct: 3   WRKAGISYAAYLNVAAQAIRSSLKTELQT 31


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,910,341
Number of Sequences: 219361
Number of extensions: 1034415
Number of successful extensions: 2893
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2892
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)