No.
Definition
Score (bits)
E Value
1 dbj|AK106731.1| Oryza sativa (japonica cultivar-group) cDNA clon...
551
e-153
2 ref|NM_192831.1| Oryza sativa (japonica cultivar-group), predic...
543
e-151
3 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
313
4e-82
4 dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D...
313
4e-82
5 dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic D...
313
4e-82
6 ref|NM_116334.2| Arabidopsis thaliana hydrolase, hydrolyzing O-g...
48
0.040
7 emb|AL161491.2|ATCHRIV3 Arabidopsis thaliana DNA chromosome 4, c...
48
0.040
8 gb|AY128359.1| Arabidopsis thaliana unknown protein (At4g01040) ...
48
0.040
9 emb|BX828310.1|CNS0A2WW Arabidopsis thaliana Full-length cDNA Co...
48
0.040
10 gb|BT002097.1| Arabidopsis thaliana unknown protein (At4g01040) ...
48
0.040
11 gb|AF007269.1|IG002N01 Arabidopsis thaliana BAC IG002N01
48
0.040
12 ref|XM_787572.1| PREDICTED: Strongylocentrotus purpuratus simila...
42
2.5
13 emb|AL353895.4| Human DNA sequence from clone RP11-503K16 on chr...
42
2.5
14 ref|XM_778575.1| PREDICTED: Strongylocentrotus purpuratus simila...
42
2.5
15 gb|AC018866.9| Homo sapiens BAC clone RP11-57J18 from 2, complet...
42
2.5
16 gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence
42
2.5
17 emb|AL449963.2|HS399M15 Homo sapiens chromosome 9 BAC RP11-399M1...
42
2.5
18 emb|CR847509.9| Zebrafish DNA sequence from clone DKEY-29B22 in ...
42
2.5
19 gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, co...
40
9.8
20 ref|XM_630638.1| Dictyostelium discoideum hypothetical protein (...
40
9.8
21 gb|AC164587.5| Mus musculus chromosome 5, clone RP24-222H12, com...
40
9.8
22 gb|AE008420.1| Streptococcus pneumoniae R6 section 36 of 184 of ...
40
9.8
23 gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, comp...
40
9.8
24 gb|AC140387.2| Mus musculus BAC clone RP24-185D21 from chromosom...
40
9.8
25 gb|AC123833.3| Mus musculus BAC clone RP24-127A22 from chromosom...
40
9.8
26 gb|AC122215.4| Mus musculus BAC clone RP23-106M18 from 16, compl...
40
9.8
27 gb|AC131738.3| Mus musculus BAC clone RP23-94E15 from 16, comple...
40
9.8
28 gb|AC136903.6| Mus musculus chromosome 9, clone RP23-475J16, com...
40
9.8
29 emb|AL359979.10| Human DNA sequence from clone RP11-239E10 on ch...
40
9.8
30 emb|AL080277.12|HSJ308E17 Human DNA sequence from clone RP1-308E...
40
9.8
31 emb|AL607146.6| Mouse DNA sequence from clone RP23-312G6 on chro...
40
9.8
32 emb|AJ630362.1| Canis familiaris MHC class II region on chromoso...
40
9.8
33 gb|AE008419.1|AE008419 Streptococcus pneumoniae R6 section 35 of...
40
9.8
34 emb|BX649494.6| Zebrafish DNA sequence from clone DKEY-173J18 in...
40
9.8
35 gb|AC154839.3| Mus musculus BAC clone RP23-61L24 from chromosome...
40
9.8
36 gb|AC023608.3| Mus musculus chromosome 18 clone CT7-402J1, compl...
40
9.8
37 gb|AC012346.9|AC012346 Homo sapiens chromosome , clone RP11-15N2...
40
9.8
38 gb|AC025519.10|AC025519 Homo sapiens, clone RP11-484J3, complete...
40
9.8
39 gb|AC020604.9| Homo sapiens BAC clone RP11-536C12 from 2, comple...
40
9.8
40 gb|AC137517.6| Homo sapiens 3 BAC RP11-671N3 (Roswell Park Cance...
40
9.8
41 gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
40
9.8
42 emb|AL929407.16| Mouse DNA sequence from clone RP23-99C16 on chr...
40
9.8
43 gb|AF083424.1|AF083424 Ateline herpesvirus 3 complete genome
40
9.8
44 emb|BX005431.3| Zebrafish DNA sequence from clone CH211-214G2 in...
40
9.8
45 dbj|AK062703.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
9.8
46 emb|AL929056.21| Zebrafish DNA sequence from clone CH211-227I14 ...
40
9.8
47 gb|AC007198.6|AC007198 Homo sapiens, clone 18_A_13, complete seq...
40
9.8
48 emb|AL714024.31| Mouse DNA sequence from clone RP23-102H7 on chr...
40
9.8
49 emb|AL844582.7| Mouse DNA sequence from clone RP23-234C7 on chro...
40
9.8
50 emb|AL731678.17| Mouse DNA sequence from clone RP23-39H12 on chr...
40
9.8
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 313 bits (158), Expect = 4e-82
Identities = 248/278 (89%)
Strand = Plus / Minus
Query: 354 acctttagaaaatagaaaatcattcccatagaaattcatcccaaggaatatcatgtgaga 413
||||||||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 24691615 acctttagaaaggagaaagtcattcccataaaaattgatgccaaggaatatcatgtgaga 24691556
Query: 414 atggccttgagaagcagaacccttggcttgaagaagtgttgttaaagaatattgtatcca 473
||| || ||||||||||| ||||| ||| ||||||||| |||||||||| ||||||||
Sbjct: 24691555 atgcccatgagaagcagaccccttcgctgcgagaagtgtttttaaagaatactgtatcca 24691496
Query: 474 cttcagaggtgcactggggccagggttttgtggtccagagaagtcatatgtcataagaga 533
||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 24691495 actcaaaggtgcactggggccagggttttgtggccctgagaagtcatatgtcataagaga 24691436
Query: 534 aaaaccatctactgagtcagccaactgcaggagatcttctggtccaaagtcttgattgtt 593
|||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||
Sbjct: 24691435 aaaaccatctactgagtcagccaactgcagaagatcttctggtctgaactcttgattgtt 24691376
Query: 594 gggcccttccatccgtggagctgggataacataaatta 631
| || ||| ||| |||||||| |||| |||||||||||
Sbjct: 24691375 gagctctttcattcgtggagcagggacaacataaatta 24691338
Score = 246 bits (124), Expect = 8e-62
Identities = 225/261 (86%)
Strand = Plus / Minus
Query: 97 agatatttctacagaacatcaaaaaagtagtccaaaccttgtccaatttcccagattgaa 156
||||||| ||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 24692181 agatattcctaaagaacatcgaaaaaatagtccaaaccttgcccaatttcccaaattgaa 24692122
Query: 157 agccctgtcccccaatcttgcgcttcatccaaacgtacagaaagagacaatagcgttgga 216
|||||||| ||||||||||| |||||||||||||||| |||||| |||| ||||||||
Sbjct: 24692121 agccctgttccccaatcttgagcttcatccaaacgtaaagaaagggacatcagcgttggg 24692062
Query: 217 taaaatacagcatgcctcacacctttatccgaatatatnnnnnnntgctctgaacttttg 276
|| ||||||||||| |||| ||||||||| ||||| | ||||||||||||||
Sbjct: 24692061 tagaatacagcatgtctcaaacctttatctgaatagacgaaaaaatgctctgaacttttc 24692002
Query: 277 tcatcccattgcaaagatggcttatacttctcaagtaaatgaatgaaatcccttccagta 336
|||||||| |||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 24692001 tcatcccactgcaaagatggcttgtacttatcaagtaaataaatgaaatcccttccagtg 24691942
Query: 337 atagaactacccccaccacct 357
|||| | |||| ||| |||||
Sbjct: 24691941 atagcattaccaccatcacct 24691921
Score = 60.0 bits (30), Expect = 1e-05
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 376 ttcccatagaaattcatcccaaggaatatcatgtgagaatggccttgagaagcagaaccc 435
||||| || ||||| || |||||||||||| |||||||||| || ||||||||||| |||
Sbjct: 24636539 ttcccttaaaaattgatgccaaggaatatcgtgtgagaatgcccatgagaagcagagccc 24636480
Query: 436 tt 437
||
Sbjct: 24636479 tt 24636478
Score = 52.0 bits (26), Expect = 0.003
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 396 aaggaatatcatgtgagaatggccttgagaagcagaaccctt 437
|||| |||||||||||||||| || ||||||||||| |||||
Sbjct: 24665862 aaggcatatcatgtgagaatgaccatgagaagcagagccctt 24665821
Score = 48.1 bits (24), Expect = 0.040
Identities = 38/42 (90%), Gaps = 3/42 (7%)
Strand = Plus / Minus
Query: 548 agtcagccaactgcaggagatcttctggtccaaagtcttgat 589
|||||||||||||||||||| |||||||| ||||||||||
Sbjct: 24665719 agtcagccaactgcaggaga---tctggtcccaagtcttgat 24665681
>dbj|AP003328.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1040D09
Length = 148102
Score = 313 bits (158), Expect = 4e-82
Identities = 248/278 (89%)
Strand = Plus / Minus
Query: 354 acctttagaaaatagaaaatcattcccatagaaattcatcccaaggaatatcatgtgaga 413
||||||||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 117578 acctttagaaaggagaaagtcattcccataaaaattgatgccaaggaatatcatgtgaga 117519
Query: 414 atggccttgagaagcagaacccttggcttgaagaagtgttgttaaagaatattgtatcca 473
||| || ||||||||||| ||||| ||| ||||||||| |||||||||| ||||||||
Sbjct: 117518 atgcccatgagaagcagaccccttcgctgcgagaagtgtttttaaagaatactgtatcca 117459
Query: 474 cttcagaggtgcactggggccagggttttgtggtccagagaagtcatatgtcataagaga 533
||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 117458 actcaaaggtgcactggggccagggttttgtggccctgagaagtcatatgtcataagaga 117399
Query: 534 aaaaccatctactgagtcagccaactgcaggagatcttctggtccaaagtcttgattgtt 593
|||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||
Sbjct: 117398 aaaaccatctactgagtcagccaactgcagaagatcttctggtctgaactcttgattgtt 117339
Query: 594 gggcccttccatccgtggagctgggataacataaatta 631
| || ||| ||| |||||||| |||| |||||||||||
Sbjct: 117338 gagctctttcattcgtggagcagggacaacataaatta 117301
Score = 246 bits (124), Expect = 8e-62
Identities = 225/261 (86%)
Strand = Plus / Minus
Query: 97 agatatttctacagaacatcaaaaaagtagtccaaaccttgtccaatttcccagattgaa 156
||||||| ||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 118144 agatattcctaaagaacatcgaaaaaatagtccaaaccttgcccaatttcccaaattgaa 118085
Query: 157 agccctgtcccccaatcttgcgcttcatccaaacgtacagaaagagacaatagcgttgga 216
|||||||| ||||||||||| |||||||||||||||| |||||| |||| ||||||||
Sbjct: 118084 agccctgttccccaatcttgagcttcatccaaacgtaaagaaagggacatcagcgttggg 118025
Query: 217 taaaatacagcatgcctcacacctttatccgaatatatnnnnnnntgctctgaacttttg 276
|| ||||||||||| |||| ||||||||| ||||| | ||||||||||||||
Sbjct: 118024 tagaatacagcatgtctcaaacctttatctgaatagacgaaaaaatgctctgaacttttc 117965
Query: 277 tcatcccattgcaaagatggcttatacttctcaagtaaatgaatgaaatcccttccagta 336
|||||||| |||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 117964 tcatcccactgcaaagatggcttgtacttatcaagtaaataaatgaaatcccttccagtg 117905
Query: 337 atagaactacccccaccacct 357
|||| | |||| ||| |||||
Sbjct: 117904 atagcattaccaccatcacct 117884
Score = 60.0 bits (30), Expect = 1e-05
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 376 ttcccatagaaattcatcccaaggaatatcatgtgagaatggccttgagaagcagaaccc 435
||||| || ||||| || |||||||||||| |||||||||| || ||||||||||| |||
Sbjct: 62502 ttcccttaaaaattgatgccaaggaatatcgtgtgagaatgcccatgagaagcagagccc 62443
Query: 436 tt 437
||
Sbjct: 62442 tt 62441
Score = 52.0 bits (26), Expect = 0.003
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 396 aaggaatatcatgtgagaatggccttgagaagcagaaccctt 437
|||| |||||||||||||||| || ||||||||||| |||||
Sbjct: 91825 aaggcatatcatgtgagaatgaccatgagaagcagagccctt 91784
Score = 48.1 bits (24), Expect = 0.040
Identities = 38/42 (90%), Gaps = 3/42 (7%)
Strand = Plus / Minus
Query: 548 agtcagccaactgcaggagatcttctggtccaaagtcttgat 589
|||||||||||||||||||| |||||||| ||||||||||
Sbjct: 91682 agtcagccaactgcaggaga---tctggtcccaagtcttgat 91644
>dbj|AP002843.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0407B12
Length = 148762
Score = 313 bits (158), Expect = 4e-82
Identities = 248/278 (89%)
Strand = Plus / Minus
Query: 354 acctttagaaaatagaaaatcattcccatagaaattcatcccaaggaatatcatgtgaga 413
||||||||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 60192 acctttagaaaggagaaagtcattcccataaaaattgatgccaaggaatatcatgtgaga 60133
Query: 414 atggccttgagaagcagaacccttggcttgaagaagtgttgttaaagaatattgtatcca 473
||| || ||||||||||| ||||| ||| ||||||||| |||||||||| ||||||||
Sbjct: 60132 atgcccatgagaagcagaccccttcgctgcgagaagtgtttttaaagaatactgtatcca 60073
Query: 474 cttcagaggtgcactggggccagggttttgtggtccagagaagtcatatgtcataagaga 533
||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 60072 actcaaaggtgcactggggccagggttttgtggccctgagaagtcatatgtcataagaga 60013
Query: 534 aaaaccatctactgagtcagccaactgcaggagatcttctggtccaaagtcttgattgtt 593
|||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||
Sbjct: 60012 aaaaccatctactgagtcagccaactgcagaagatcttctggtctgaactcttgattgtt 59953
Query: 594 gggcccttccatccgtggagctgggataacataaatta 631
| || ||| ||| |||||||| |||| |||||||||||
Sbjct: 59952 gagctctttcattcgtggagcagggacaacataaatta 59915
Score = 246 bits (124), Expect = 8e-62
Identities = 225/261 (86%)
Strand = Plus / Minus
Query: 97 agatatttctacagaacatcaaaaaagtagtccaaaccttgtccaatttcccagattgaa 156
||||||| ||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 60758 agatattcctaaagaacatcgaaaaaatagtccaaaccttgcccaatttcccaaattgaa 60699
Query: 157 agccctgtcccccaatcttgcgcttcatccaaacgtacagaaagagacaatagcgttgga 216
|||||||| ||||||||||| |||||||||||||||| |||||| |||| ||||||||
Sbjct: 60698 agccctgttccccaatcttgagcttcatccaaacgtaaagaaagggacatcagcgttggg 60639
Query: 217 taaaatacagcatgcctcacacctttatccgaatatatnnnnnnntgctctgaacttttg 276
|| ||||||||||| |||| ||||||||| ||||| | ||||||||||||||
Sbjct: 60638 tagaatacagcatgtctcaaacctttatctgaatagacgaaaaaatgctctgaacttttc 60579
Query: 277 tcatcccattgcaaagatggcttatacttctcaagtaaatgaatgaaatcccttccagta 336
|||||||| |||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 60578 tcatcccactgcaaagatggcttgtacttatcaagtaaataaatgaaatcccttccagtg 60519
Query: 337 atagaactacccccaccacct 357
|||| | |||| ||| |||||
Sbjct: 60518 atagcattaccaccatcacct 60498
Score = 60.0 bits (30), Expect = 1e-05
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 376 ttcccatagaaattcatcccaaggaatatcatgtgagaatggccttgagaagcagaaccc 435
||||| || ||||| || |||||||||||| |||||||||| || ||||||||||| |||
Sbjct: 5116 ttcccttaaaaattgatgccaaggaatatcgtgtgagaatgcccatgagaagcagagccc 5057
Query: 436 tt 437
||
Sbjct: 5056 tt 5055
Score = 52.0 bits (26), Expect = 0.003
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 396 aaggaatatcatgtgagaatggccttgagaagcagaaccctt 437
|||| |||||||||||||||| || ||||||||||| |||||
Sbjct: 34439 aaggcatatcatgtgagaatgaccatgagaagcagagccctt 34398
Score = 48.1 bits (24), Expect = 0.040
Identities = 38/42 (90%), Gaps = 3/42 (7%)
Strand = Plus / Minus
Query: 548 agtcagccaactgcaggagatcttctggtccaaagtcttgat 589
|||||||||||||||||||| |||||||| ||||||||||
Sbjct: 34296 agtcagccaactgcaggaga---tctggtcccaagtcttgat 34258
>emb|AJ630362.1 | Canis familiaris MHC class II region on chromosome CFA12, partial
sequence, BAC clone 236k8, gene for protein similar to
butyrophilin subfamily 1 member A1 (BTN1A1), FK506-binding
protein 1A pseudogene, BTNL2 gene, ATP5L pseudogene,
DLA-DRA1 gene, RPL7A pseudogene and DLA-DRB1 gene
Length = 135953
Score = 40.1 bits (20), Expect = 9.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 441 ttgaagaagtgttgttaaag 460
||||||||||||||||||||
Sbjct: 95014 ttgaagaagtgttgttaaag 95033
>emb|AL731678.17 | Mouse DNA sequence from clone RP23-39H12 on chromosome X, complete
sequence
Length = 230186
Score = 40.1 bits (20), Expect = 9.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 352 ccacctttagaaaatagaaa 371
||||||||||||||||||||
Sbjct: 24127 ccacctttagaaaatagaaa 24108
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,840,754
Number of Sequences: 3902068
Number of extensions: 7840754
Number of successful extensions: 155664
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 155445
Number of HSP's gapped (non-prelim): 215
length of query: 715
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 692
effective length of database: 17,143,297,704
effective search space: 11863162011168
effective search space used: 11863162011168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)