ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26g19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK106731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 551 e-153
2ref|NM_192831.1| Oryza sativa (japonica cultivar-group), predic... 543 e-151
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 313 4e-82
4dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D... 313 4e-82
5dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic D... 313 4e-82
6ref|NM_116334.2| Arabidopsis thaliana hydrolase, hydrolyzing O-g... 48 0.040
7emb|AL161491.2|ATCHRIV3 Arabidopsis thaliana DNA chromosome 4, c... 48 0.040
8gb|AY128359.1| Arabidopsis thaliana unknown protein (At4g01040) ... 48 0.040
9emb|BX828310.1|CNS0A2WW Arabidopsis thaliana Full-length cDNA Co... 48 0.040
10gb|BT002097.1| Arabidopsis thaliana unknown protein (At4g01040) ... 48 0.040
11gb|AF007269.1|IG002N01 Arabidopsis thaliana BAC IG002N01 48 0.040
12ref|XM_787572.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.5
13emb|AL353895.4| Human DNA sequence from clone RP11-503K16 on chr... 42 2.5
14ref|XM_778575.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.5
15gb|AC018866.9| Homo sapiens BAC clone RP11-57J18 from 2, complet... 42 2.5
16gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence 42 2.5
17emb|AL449963.2|HS399M15 Homo sapiens chromosome 9 BAC RP11-399M1... 42 2.5
18emb|CR847509.9| Zebrafish DNA sequence from clone DKEY-29B22 in ... 42 2.5
19gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, co... 40 9.8
20ref|XM_630638.1| Dictyostelium discoideum hypothetical protein (... 40 9.8
21gb|AC164587.5| Mus musculus chromosome 5, clone RP24-222H12, com... 40 9.8
22gb|AE008420.1| Streptococcus pneumoniae R6 section 36 of 184 of ... 40 9.8
23gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, comp... 40 9.8
24gb|AC140387.2| Mus musculus BAC clone RP24-185D21 from chromosom... 40 9.8
25gb|AC123833.3| Mus musculus BAC clone RP24-127A22 from chromosom... 40 9.8
26gb|AC122215.4| Mus musculus BAC clone RP23-106M18 from 16, compl... 40 9.8
27gb|AC131738.3| Mus musculus BAC clone RP23-94E15 from 16, comple... 40 9.8
28gb|AC136903.6| Mus musculus chromosome 9, clone RP23-475J16, com... 40 9.8
29emb|AL359979.10| Human DNA sequence from clone RP11-239E10 on ch... 40 9.8
30emb|AL080277.12|HSJ308E17 Human DNA sequence from clone RP1-308E... 40 9.8
31emb|AL607146.6| Mouse DNA sequence from clone RP23-312G6 on chro... 40 9.8
32emb|AJ630362.1| Canis familiaris MHC class II region on chromoso... 40 9.8
33gb|AE008419.1|AE008419 Streptococcus pneumoniae R6 section 35 of... 40 9.8
34emb|BX649494.6| Zebrafish DNA sequence from clone DKEY-173J18 in... 40 9.8
35gb|AC154839.3| Mus musculus BAC clone RP23-61L24 from chromosome... 40 9.8
36gb|AC023608.3| Mus musculus chromosome 18 clone CT7-402J1, compl... 40 9.8
37gb|AC012346.9|AC012346 Homo sapiens chromosome , clone RP11-15N2... 40 9.8
38gb|AC025519.10|AC025519 Homo sapiens, clone RP11-484J3, complete... 40 9.8
39gb|AC020604.9| Homo sapiens BAC clone RP11-536C12 from 2, comple... 40 9.8
40gb|AC137517.6| Homo sapiens 3 BAC RP11-671N3 (Roswell Park Cance... 40 9.8
41gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome 40 9.8
42emb|AL929407.16| Mouse DNA sequence from clone RP23-99C16 on chr... 40 9.8
43gb|AF083424.1|AF083424 Ateline herpesvirus 3 complete genome 40 9.8
44emb|BX005431.3| Zebrafish DNA sequence from clone CH211-214G2 in... 40 9.8
45dbj|AK062703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.8
46emb|AL929056.21| Zebrafish DNA sequence from clone CH211-227I14 ... 40 9.8
47gb|AC007198.6|AC007198 Homo sapiens, clone 18_A_13, complete seq... 40 9.8
48emb|AL714024.31| Mouse DNA sequence from clone RP23-102H7 on chr... 40 9.8
49emb|AL844582.7| Mouse DNA sequence from clone RP23-234C7 on chro... 40 9.8
50emb|AL731678.17| Mouse DNA sequence from clone RP23-39H12 on chr... 40 9.8

>dbj|AK106731.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H10, full
            insert sequence
          Length = 1679

 Score =  551 bits (278), Expect = e-153
 Identities = 469/535 (87%)
 Strand = Plus / Minus

                                                                        
Query: 97   agatatttctacagaacatcaaaaaagtagtccaaaccttgtccaatttcccagattgaa 156
            ||||||| ||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 1438 agatattcctaaagaacatcgaaaaaatagtccaaaccttgcccaatttcccaaattgaa 1379

                                                                        
Query: 157  agccctgtcccccaatcttgcgcttcatccaaacgtacagaaagagacaatagcgttgga 216
            |||||||| ||||||||||| |||||||||||||||| |||||| ||||  |||||||| 
Sbjct: 1378 agccctgttccccaatcttgagcttcatccaaacgtaaagaaagggacatcagcgttggg 1319

                                                                        
Query: 217  taaaatacagcatgcctcacacctttatccgaatatatnnnnnnntgctctgaacttttg 276
            || ||||||||||| |||| ||||||||| ||||| |        |||||||||||||| 
Sbjct: 1318 tagaatacagcatgtctcaaacctttatctgaatagacgaaaaaatgctctgaacttttc 1259

                                                                        
Query: 277  tcatcccattgcaaagatggcttatacttctcaagtaaatgaatgaaatcccttccagta 336
            |||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||||| 
Sbjct: 1258 tcatcccactgcaaagatggcttgtacttatcaagtaaataaatgaaatcccttccagtg 1199

                                                                        
Query: 337  atagaactacccccaccacctttagaaaatagaaaatcattcccatagaaattcatccca 396
            |||| | |||| ||| ||||||||||||  ||||| ||||||||||| ||||| || |||
Sbjct: 1198 atagcattaccaccatcacctttagaaaggagaaagtcattcccataaaaattgatgcca 1139

                                                                        
Query: 397  aggaatatcatgtgagaatggccttgagaagcagaacccttggcttgaagaagtgttgtt 456
            |||||||||||||||||||| || ||||||||||| ||||| |||   ||||||||| ||
Sbjct: 1138 aggaatatcatgtgagaatgcccatgagaagcagaccccttcgctgcgagaagtgttttt 1079

                                                                        
Query: 457  aaagaatattgtatccacttcagaggtgcactggggccagggttttgtggtccagagaag 516
            |||||||| ||||||||  ||| ||||||||||||||||||||||||||| || ||||||
Sbjct: 1078 aaagaatactgtatccaactcaaaggtgcactggggccagggttttgtggccctgagaag 1019

                                                                        
Query: 517  tcatatgtcataagagaaaaaccatctactgagtcagccaactgcaggagatcttctggt 576
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1018 tcatatgtcataagagaaaaaccatctactgagtcagccaactgcagaagatcttctggt 959

                                                                   
Query: 577  ccaaagtcttgattgttgggcccttccatccgtggagctgggataacataaatta 631
            |  || |||||||||||| || ||| ||| |||||||| |||| |||||||||||
Sbjct: 958  ctgaactcttgattgttgagctctttcattcgtggagcagggacaacataaatta 904



to top

>ref|NM_192831.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1509

 Score =  543 bits (274), Expect = e-151
 Identities = 459/523 (87%)
 Strand = Plus / Minus

                                                                        
Query: 109  agaacatcaaaaaagtagtccaaaccttgtccaatttcccagattgaaagccctgtcccc 168
            |||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 1505 agaacatcgaaaaaatagtccaaaccttgcccaatttcccaaattgaaagccctgttccc 1446

                                                                        
Query: 169  caatcttgcgcttcatccaaacgtacagaaagagacaatagcgttggataaaatacagca 228
            |||||||| |||||||||||||||| |||||| ||||  |||||||| || |||||||||
Sbjct: 1445 caatcttgagcttcatccaaacgtaaagaaagggacatcagcgttgggtagaatacagca 1386

                                                                        
Query: 229  tgcctcacacctttatccgaatatatnnnnnnntgctctgaacttttgtcatcccattgc 288
            || |||| ||||||||| ||||| |        |||||||||||||| |||||||| |||
Sbjct: 1385 tgtctcaaacctttatctgaatagacgaaaaaatgctctgaacttttctcatcccactgc 1326

                                                                        
Query: 289  aaagatggcttatacttctcaagtaaatgaatgaaatcccttccagtaatagaactaccc 348
            ||||||||||| ||||| |||||||||| |||||||||||||||||| |||| | |||| 
Sbjct: 1325 aaagatggcttgtacttatcaagtaaataaatgaaatcccttccagtgatagcattacca 1266

                                                                        
Query: 349  ccaccacctttagaaaatagaaaatcattcccatagaaattcatcccaaggaatatcatg 408
            ||| ||||||||||||  ||||| ||||||||||| ||||| || |||||||||||||||
Sbjct: 1265 ccatcacctttagaaaggagaaagtcattcccataaaaattgatgccaaggaatatcatg 1206

                                                                        
Query: 409  tgagaatggccttgagaagcagaacccttggcttgaagaagtgttgttaaagaatattgt 468
            |||||||| || ||||||||||| ||||| |||   ||||||||| |||||||||| |||
Sbjct: 1205 tgagaatgcccatgagaagcagaccccttcgctgcgagaagtgtttttaaagaatactgt 1146

                                                                        
Query: 469  atccacttcagaggtgcactggggccagggttttgtggtccagagaagtcatatgtcata 528
            |||||  ||| ||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 1145 atccaactcaaaggtgcactggggccagggttttgtggccctgagaagtcatatgtcata 1086

                                                                        
Query: 529  agagaaaaaccatctactgagtcagccaactgcaggagatcttctggtccaaagtcttga 588
            ||||||||||||||||||||||||||||||||||| |||||||||||||  || ||||||
Sbjct: 1085 agagaaaaaccatctactgagtcagccaactgcagaagatcttctggtctgaactcttga 1026

                                                       
Query: 589  ttgttgggcccttccatccgtggagctgggataacataaatta 631
            |||||| || ||| ||| |||||||| |||| |||||||||||
Sbjct: 1025 ttgttgagctctttcattcgtggagcagggacaacataaatta 983



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  313 bits (158), Expect = 4e-82
 Identities = 248/278 (89%)
 Strand = Plus / Minus

                                                                            
Query: 354      acctttagaaaatagaaaatcattcccatagaaattcatcccaaggaatatcatgtgaga 413
                |||||||||||  ||||| ||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 24691615 acctttagaaaggagaaagtcattcccataaaaattgatgccaaggaatatcatgtgaga 24691556

                                                                            
Query: 414      atggccttgagaagcagaacccttggcttgaagaagtgttgttaaagaatattgtatcca 473
                ||| || ||||||||||| ||||| |||   ||||||||| |||||||||| ||||||||
Sbjct: 24691555 atgcccatgagaagcagaccccttcgctgcgagaagtgtttttaaagaatactgtatcca 24691496

                                                                            
Query: 474      cttcagaggtgcactggggccagggttttgtggtccagagaagtcatatgtcataagaga 533
                  ||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 24691495 actcaaaggtgcactggggccagggttttgtggccctgagaagtcatatgtcataagaga 24691436

                                                                            
Query: 534      aaaaccatctactgagtcagccaactgcaggagatcttctggtccaaagtcttgattgtt 593
                |||||||||||||||||||||||||||||| |||||||||||||  || |||||||||||
Sbjct: 24691435 aaaaccatctactgagtcagccaactgcagaagatcttctggtctgaactcttgattgtt 24691376

                                                      
Query: 594      gggcccttccatccgtggagctgggataacataaatta 631
                | || ||| ||| |||||||| |||| |||||||||||
Sbjct: 24691375 gagctctttcattcgtggagcagggacaacataaatta 24691338



 Score =  246 bits (124), Expect = 8e-62
 Identities = 225/261 (86%)
 Strand = Plus / Minus

                                                                            
Query: 97       agatatttctacagaacatcaaaaaagtagtccaaaccttgtccaatttcccagattgaa 156
                ||||||| ||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 24692181 agatattcctaaagaacatcgaaaaaatagtccaaaccttgcccaatttcccaaattgaa 24692122

                                                                            
Query: 157      agccctgtcccccaatcttgcgcttcatccaaacgtacagaaagagacaatagcgttgga 216
                |||||||| ||||||||||| |||||||||||||||| |||||| ||||  |||||||| 
Sbjct: 24692121 agccctgttccccaatcttgagcttcatccaaacgtaaagaaagggacatcagcgttggg 24692062

                                                                            
Query: 217      taaaatacagcatgcctcacacctttatccgaatatatnnnnnnntgctctgaacttttg 276
                || ||||||||||| |||| ||||||||| ||||| |        |||||||||||||| 
Sbjct: 24692061 tagaatacagcatgtctcaaacctttatctgaatagacgaaaaaatgctctgaacttttc 24692002

                                                                            
Query: 277      tcatcccattgcaaagatggcttatacttctcaagtaaatgaatgaaatcccttccagta 336
                |||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||||| 
Sbjct: 24692001 tcatcccactgcaaagatggcttgtacttatcaagtaaataaatgaaatcccttccagtg 24691942

                                     
Query: 337      atagaactacccccaccacct 357
                |||| | |||| ||| |||||
Sbjct: 24691941 atagcattaccaccatcacct 24691921



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                            
Query: 376      ttcccatagaaattcatcccaaggaatatcatgtgagaatggccttgagaagcagaaccc 435
                ||||| || ||||| || |||||||||||| |||||||||| || ||||||||||| |||
Sbjct: 24636539 ttcccttaaaaattgatgccaaggaatatcgtgtgagaatgcccatgagaagcagagccc 24636480

                  
Query: 436      tt 437
                ||
Sbjct: 24636479 tt 24636478



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                          
Query: 396      aaggaatatcatgtgagaatggccttgagaagcagaaccctt 437
                |||| |||||||||||||||| || ||||||||||| |||||
Sbjct: 24665862 aaggcatatcatgtgagaatgaccatgagaagcagagccctt 24665821



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 38/42 (90%), Gaps = 3/42 (7%)
 Strand = Plus / Minus

                                                          
Query: 548      agtcagccaactgcaggagatcttctggtccaaagtcttgat 589
                ||||||||||||||||||||   |||||||| ||||||||||
Sbjct: 24665719 agtcagccaactgcaggaga---tctggtcccaagtcttgat 24665681



to top

>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1040D09
          Length = 148102

 Score =  313 bits (158), Expect = 4e-82
 Identities = 248/278 (89%)
 Strand = Plus / Minus

                                                                          
Query: 354    acctttagaaaatagaaaatcattcccatagaaattcatcccaaggaatatcatgtgaga 413
              |||||||||||  ||||| ||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 117578 acctttagaaaggagaaagtcattcccataaaaattgatgccaaggaatatcatgtgaga 117519

                                                                          
Query: 414    atggccttgagaagcagaacccttggcttgaagaagtgttgttaaagaatattgtatcca 473
              ||| || ||||||||||| ||||| |||   ||||||||| |||||||||| ||||||||
Sbjct: 117518 atgcccatgagaagcagaccccttcgctgcgagaagtgtttttaaagaatactgtatcca 117459

                                                                          
Query: 474    cttcagaggtgcactggggccagggttttgtggtccagagaagtcatatgtcataagaga 533
                ||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 117458 actcaaaggtgcactggggccagggttttgtggccctgagaagtcatatgtcataagaga 117399

                                                                          
Query: 534    aaaaccatctactgagtcagccaactgcaggagatcttctggtccaaagtcttgattgtt 593
              |||||||||||||||||||||||||||||| |||||||||||||  || |||||||||||
Sbjct: 117398 aaaaccatctactgagtcagccaactgcagaagatcttctggtctgaactcttgattgtt 117339

                                                    
Query: 594    gggcccttccatccgtggagctgggataacataaatta 631
              | || ||| ||| |||||||| |||| |||||||||||
Sbjct: 117338 gagctctttcattcgtggagcagggacaacataaatta 117301



 Score =  246 bits (124), Expect = 8e-62
 Identities = 225/261 (86%)
 Strand = Plus / Minus

                                                                          
Query: 97     agatatttctacagaacatcaaaaaagtagtccaaaccttgtccaatttcccagattgaa 156
              ||||||| ||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 118144 agatattcctaaagaacatcgaaaaaatagtccaaaccttgcccaatttcccaaattgaa 118085

                                                                          
Query: 157    agccctgtcccccaatcttgcgcttcatccaaacgtacagaaagagacaatagcgttgga 216
              |||||||| ||||||||||| |||||||||||||||| |||||| ||||  |||||||| 
Sbjct: 118084 agccctgttccccaatcttgagcttcatccaaacgtaaagaaagggacatcagcgttggg 118025

                                                                          
Query: 217    taaaatacagcatgcctcacacctttatccgaatatatnnnnnnntgctctgaacttttg 276
              || ||||||||||| |||| ||||||||| ||||| |        |||||||||||||| 
Sbjct: 118024 tagaatacagcatgtctcaaacctttatctgaatagacgaaaaaatgctctgaacttttc 117965

                                                                          
Query: 277    tcatcccattgcaaagatggcttatacttctcaagtaaatgaatgaaatcccttccagta 336
              |||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||||| 
Sbjct: 117964 tcatcccactgcaaagatggcttgtacttatcaagtaaataaatgaaatcccttccagtg 117905

                                   
Query: 337    atagaactacccccaccacct 357
              |||| | |||| ||| |||||
Sbjct: 117904 atagcattaccaccatcacct 117884



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                         
Query: 376   ttcccatagaaattcatcccaaggaatatcatgtgagaatggccttgagaagcagaaccc 435
             ||||| || ||||| || |||||||||||| |||||||||| || ||||||||||| |||
Sbjct: 62502 ttcccttaaaaattgatgccaaggaatatcgtgtgagaatgcccatgagaagcagagccc 62443

               
Query: 436   tt 437
             ||
Sbjct: 62442 tt 62441



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 396   aaggaatatcatgtgagaatggccttgagaagcagaaccctt 437
             |||| |||||||||||||||| || ||||||||||| |||||
Sbjct: 91825 aaggcatatcatgtgagaatgaccatgagaagcagagccctt 91784



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 38/42 (90%), Gaps = 3/42 (7%)
 Strand = Plus / Minus

                                                       
Query: 548   agtcagccaactgcaggagatcttctggtccaaagtcttgat 589
             ||||||||||||||||||||   |||||||| ||||||||||
Sbjct: 91682 agtcagccaactgcaggaga---tctggtcccaagtcttgat 91644



to top

>dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0407B12
          Length = 148762

 Score =  313 bits (158), Expect = 4e-82
 Identities = 248/278 (89%)
 Strand = Plus / Minus

                                                                         
Query: 354   acctttagaaaatagaaaatcattcccatagaaattcatcccaaggaatatcatgtgaga 413
             |||||||||||  ||||| ||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 60192 acctttagaaaggagaaagtcattcccataaaaattgatgccaaggaatatcatgtgaga 60133

                                                                         
Query: 414   atggccttgagaagcagaacccttggcttgaagaagtgttgttaaagaatattgtatcca 473
             ||| || ||||||||||| ||||| |||   ||||||||| |||||||||| ||||||||
Sbjct: 60132 atgcccatgagaagcagaccccttcgctgcgagaagtgtttttaaagaatactgtatcca 60073

                                                                         
Query: 474   cttcagaggtgcactggggccagggttttgtggtccagagaagtcatatgtcataagaga 533
               ||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 60072 actcaaaggtgcactggggccagggttttgtggccctgagaagtcatatgtcataagaga 60013

                                                                         
Query: 534   aaaaccatctactgagtcagccaactgcaggagatcttctggtccaaagtcttgattgtt 593
             |||||||||||||||||||||||||||||| |||||||||||||  || |||||||||||
Sbjct: 60012 aaaaccatctactgagtcagccaactgcagaagatcttctggtctgaactcttgattgtt 59953

                                                   
Query: 594   gggcccttccatccgtggagctgggataacataaatta 631
             | || ||| ||| |||||||| |||| |||||||||||
Sbjct: 59952 gagctctttcattcgtggagcagggacaacataaatta 59915



 Score =  246 bits (124), Expect = 8e-62
 Identities = 225/261 (86%)
 Strand = Plus / Minus

                                                                         
Query: 97    agatatttctacagaacatcaaaaaagtagtccaaaccttgtccaatttcccagattgaa 156
             ||||||| ||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 60758 agatattcctaaagaacatcgaaaaaatagtccaaaccttgcccaatttcccaaattgaa 60699

                                                                         
Query: 157   agccctgtcccccaatcttgcgcttcatccaaacgtacagaaagagacaatagcgttgga 216
             |||||||| ||||||||||| |||||||||||||||| |||||| ||||  |||||||| 
Sbjct: 60698 agccctgttccccaatcttgagcttcatccaaacgtaaagaaagggacatcagcgttggg 60639

                                                                         
Query: 217   taaaatacagcatgcctcacacctttatccgaatatatnnnnnnntgctctgaacttttg 276
             || ||||||||||| |||| ||||||||| ||||| |        |||||||||||||| 
Sbjct: 60638 tagaatacagcatgtctcaaacctttatctgaatagacgaaaaaatgctctgaacttttc 60579

                                                                         
Query: 277   tcatcccattgcaaagatggcttatacttctcaagtaaatgaatgaaatcccttccagta 336
             |||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||||| 
Sbjct: 60578 tcatcccactgcaaagatggcttgtacttatcaagtaaataaatgaaatcccttccagtg 60519

                                  
Query: 337   atagaactacccccaccacct 357
             |||| | |||| ||| |||||
Sbjct: 60518 atagcattaccaccatcacct 60498



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 376  ttcccatagaaattcatcccaaggaatatcatgtgagaatggccttgagaagcagaaccc 435
            ||||| || ||||| || |||||||||||| |||||||||| || ||||||||||| |||
Sbjct: 5116 ttcccttaaaaattgatgccaaggaatatcgtgtgagaatgcccatgagaagcagagccc 5057

              
Query: 436  tt 437
            ||
Sbjct: 5056 tt 5055



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 396   aaggaatatcatgtgagaatggccttgagaagcagaaccctt 437
             |||| |||||||||||||||| || ||||||||||| |||||
Sbjct: 34439 aaggcatatcatgtgagaatgaccatgagaagcagagccctt 34398



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 38/42 (90%), Gaps = 3/42 (7%)
 Strand = Plus / Minus

                                                       
Query: 548   agtcagccaactgcaggagatcttctggtccaaagtcttgat 589
             ||||||||||||||||||||   |||||||| ||||||||||
Sbjct: 34296 agtcagccaactgcaggaga---tctggtcccaagtcttgat 34258



to top

>ref|NM_116334.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
            AT4G01040 mRNA, complete cds
          Length = 1447

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 130  aaaccttgtccaatttcccagattgaaa 157
            ||||||||||| ||||||||||||||||
Sbjct: 1281 aaaccttgtccgatttcccagattgaaa 1254



to top

>emb|AL161491.2|ATCHRIV3 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 3
          Length = 196149

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 130   aaaccttgtccaatttcccagattgaaa 157
             ||||||||||| ||||||||||||||||
Sbjct: 69096 aaaccttgtccgatttcccagattgaaa 69069



to top

>gb|AY128359.1| Arabidopsis thaliana unknown protein (At4g01040) mRNA, complete cds
          Length = 1335

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 130  aaaccttgtccaatttcccagattgaaa 157
            ||||||||||| ||||||||||||||||
Sbjct: 1193 aaaccttgtccgatttcccagattgaaa 1166



to top

>emb|BX828310.1|CNS0A2WW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH75ZB06 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1442

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 130  aaaccttgtccaatttcccagattgaaa 157
            ||||||||||| ||||||||||||||||
Sbjct: 1275 aaaccttgtccgatttcccagattgaaa 1248



to top

>gb|BT002097.1| Arabidopsis thaliana unknown protein (At4g01040) mRNA, complete cds
          Length = 1290

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 130  aaaccttgtccaatttcccagattgaaa 157
            ||||||||||| ||||||||||||||||
Sbjct: 1180 aaaccttgtccgatttcccagattgaaa 1153



to top

>gb|AF007269.1|IG002N01 Arabidopsis thaliana BAC IG002N01
          Length = 124225

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 130    aaaccttgtccaatttcccagattgaaa 157
              ||||||||||| ||||||||||||||||
Sbjct: 118599 aaaccttgtccgatttcccagattgaaa 118626



to top

>ref|XM_787572.1| PREDICTED: Strongylocentrotus purpuratus similar to CG8460-PA
           (LOC587862), mRNA
          Length = 774

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 510 agagaagtcatatgtcataag 530
           |||||||||||||||||||||
Sbjct: 396 agagaagtcatatgtcataag 376



to top

>emb|AL353895.4| Human DNA sequence from clone RP11-503K16 on chromosome 9 Contains the
             3' end of the ADAMTSL1 gene for ADAMTS-like (ADAMTSR1,
             MGC40139) and a ras-related protein family pseudogene,
             complete sequence
          Length = 163163

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 118   aaaaagtagtccaaaccttgtccaa 142
             |||||||||||||||||||| ||||
Sbjct: 66815 aaaaagtagtccaaaccttgcccaa 66839



to top

>ref|XM_778575.1| PREDICTED: Strongylocentrotus purpuratus similar to CG8460-PA
           (LOC578405), mRNA
          Length = 1182

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 510 agagaagtcatatgtcataag 530
           |||||||||||||||||||||
Sbjct: 804 agagaagtcatatgtcataag 784



to top

>gb|AC018866.9| Homo sapiens BAC clone RP11-57J18 from 2, complete sequence
          Length = 154983

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 439    gcttgaagaagtgttgttaaa 459
              |||||||||||||||||||||
Sbjct: 121633 gcttgaagaagtgttgttaaa 121653



to top

>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence
          Length = 77136

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 458   aagaatattgtatccacttca 478
             |||||||||||||||||||||
Sbjct: 26652 aagaatattgtatccacttca 26672



to top

>emb|AL449963.2|HS399M15 Homo sapiens chromosome 9 BAC RP11-399M15, complete sequence
          Length = 213216

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 118    aaaaagtagtccaaaccttgtccaa 142
              |||||||||||||||||||| ||||
Sbjct: 187552 aaaaagtagtccaaaccttgcccaa 187576



to top

>emb|CR847509.9| Zebrafish DNA sequence from clone DKEY-29B22 in linkage group 3,
             complete sequence
          Length = 157983

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 373   tcattcccatagaaattcatcccaa 397
             ||||||||||||||| |||||||||
Sbjct: 19400 tcattcccatagaaaatcatcccaa 19424



to top

>gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, complete sequence
          Length = 212827

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    ttgagaagcagaacccttgg 439
              ||||||||||||||||||||
Sbjct: 149710 ttgagaagcagaacccttgg 149691



to top

>ref|XM_630638.1| Dictyostelium discoideum hypothetical protein (DDB0188880), partial
            mRNA
          Length = 1158

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 130  aaaccttgtccaatttcccagattgaaa 157
            |||||||| ||||||||||| |||||||
Sbjct: 1133 aaaccttgaccaatttcccaaattgaaa 1106



to top

>gb|AC164587.5| Mus musculus chromosome 5, clone RP24-222H12, complete sequence
          Length = 176841

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    caaaaaataacattcataaa 95
             ||||||||||||||||||||
Sbjct: 69784 caaaaaataacattcataaa 69803



to top

>gb|AE008420.1| Streptococcus pneumoniae R6 section 36 of 184 of the complete
          genome
          Length = 11274

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 78 aaaaataacattcataaata 97
          ||||||||||||||||||||
Sbjct: 5  aaaaataacattcataaata 24



to top

>gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, complete sequence
          Length = 200362

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   ttgagaagcagaacccttgg 439
             ||||||||||||||||||||
Sbjct: 53839 ttgagaagcagaacccttgg 53820



to top

>gb|AC140387.2| Mus musculus BAC clone RP24-185D21 from chromosome 9, complete
            sequence
          Length = 158741

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 315  atgaatgaaatcccttccag 334
            ||||||||||||||||||||
Sbjct: 8923 atgaatgaaatcccttccag 8904



to top

>gb|AC123833.3| Mus musculus BAC clone RP24-127A22 from chromosome 13, complete sequence
          Length = 146493

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 309    aagtaaatgaatgaaatcccttcc 332
              ||||||||||||||||| ||||||
Sbjct: 133320 aagtaaatgaatgaaattccttcc 133297



to top

>gb|AC122215.4| Mus musculus BAC clone RP23-106M18 from 16, complete sequence
          Length = 195086

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 222    tacagcatgcctcacacctttatc 245
              ||||||||||| ||||||||||||
Sbjct: 183483 tacagcatgccccacacctttatc 183460



to top

>gb|AC131738.3| Mus musculus BAC clone RP23-94E15 from 16, complete sequence
          Length = 199386

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 222    tacagcatgcctcacacctttatc 245
              ||||||||||| ||||||||||||
Sbjct: 149748 tacagcatgccccacacctttatc 149771



to top

>gb|AC136903.6| Mus musculus chromosome 9, clone RP23-475J16, complete sequence
          Length = 180530

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    atgaatgaaatcccttccag 334
              ||||||||||||||||||||
Sbjct: 134699 atgaatgaaatcccttccag 134680



to top

>emb|AL359979.10| Human DNA sequence from clone RP11-239E10 on chromosome 1 Contains the 5'
              end of the TLR5 gene for toll-like receptor 5, two novel
              genes, the gene for a novel protein (FLJ10052) and a CpG
              island, complete sequence
          Length = 181466

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 472    cacttcagaggtgcactggg 491
              ||||||||||||||||||||
Sbjct: 111046 cacttcagaggtgcactggg 111027



to top

>emb|AL080277.12|HSJ308E17 Human DNA sequence from clone RP1-308E17 on chromosome 6q22.1-22.3,
              complete sequence
          Length = 145167

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 367    agaaaatcattcccatagaaattc 390
              |||||||| |||||||||||||||
Sbjct: 121968 agaaaatctttcccatagaaattc 121991



to top

>emb|AL607146.6| Mouse DNA sequence from clone RP23-312G6 on chromosome 11 Contains the
             5' end of a novel gene, complete sequence
          Length = 191046

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 93    aaatagatatttctacagaacatc 116
             ||||| ||||||||||||||||||
Sbjct: 32296 aaatatatatttctacagaacatc 32273



to top

>emb|AJ630362.1| Canis familiaris MHC class II region on chromosome CFA12, partial
             sequence, BAC clone 236k8, gene for protein similar to
             butyrophilin subfamily 1 member A1 (BTN1A1), FK506-binding
             protein 1A pseudogene, BTNL2 gene, ATP5L pseudogene,
             DLA-DRA1 gene, RPL7A pseudogene and DLA-DRB1 gene
          Length = 135953

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 441   ttgaagaagtgttgttaaag 460
             ||||||||||||||||||||
Sbjct: 95014 ttgaagaagtgttgttaaag 95033



to top

>gb|AE008419.1|AE008419 Streptococcus pneumoniae R6 section 35 of 184 of the complete genome
          Length = 10924

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aaaaataacattcataaata 97
             ||||||||||||||||||||
Sbjct: 10869 aaaaataacattcataaata 10888



to top

>emb|BX649494.6| Zebrafish DNA sequence from clone DKEY-173J18 in linkage group 16,
              complete sequence
          Length = 175187

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    aacatcaaaaaagtagtcca 130
              ||||||||||||||||||||
Sbjct: 173976 aacatcaaaaaagtagtcca 173995



to top

>gb|AC154839.3| Mus musculus BAC clone RP23-61L24 from chromosome 13, complete sequence
          Length = 209819

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 309   aagtaaatgaatgaaatcccttcc 332
             ||||||||||||||||| ||||||
Sbjct: 57219 aagtaaatgaatgaaattccttcc 57196



to top

>gb|AC023608.3| Mus musculus chromosome 18 clone CT7-402J1, complete sequence
          Length = 138710

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 93     aaatagatatttctacagaacatc 116
              ||||| ||||||||||||||||||
Sbjct: 116936 aaatatatatttctacagaacatc 116959



to top

>gb|AC012346.9|AC012346 Homo sapiens chromosome , clone RP11-15N22, complete sequence
          Length = 164470

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 539   catctactgagtcagccaac 558
             ||||||||||||||||||||
Sbjct: 19374 catctactgagtcagccaac 19393



to top

>gb|AC025519.10|AC025519 Homo sapiens, clone RP11-484J3, complete sequence
          Length = 171464

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 539  catctactgagtcagccaac 558
            ||||||||||||||||||||
Sbjct: 7102 catctactgagtcagccaac 7083



to top

>gb|AC020604.9| Homo sapiens BAC clone RP11-536C12 from 2, complete sequence
          Length = 130506

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 544   actgagtcagccaactgcag 563
             ||||||||||||||||||||
Sbjct: 20421 actgagtcagccaactgcag 20440



to top

>gb|AC137517.6| Homo sapiens 3 BAC RP11-671N3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 105622

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   ttctcaagtaaatgaatgaa 323
             ||||||||||||||||||||
Sbjct: 90784 ttctcaagtaaatgaatgaa 90803



to top

>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     aaaaataacattcataaata 97
              ||||||||||||||||||||
Sbjct: 417323 aaaaataacattcataaata 417342



to top

>emb|AL929407.16| Mouse DNA sequence from clone RP23-99C16 on chromosome 2, complete
             sequence
          Length = 144566

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 358   ttagaaaatagaaaatcatt 377
             ||||||||||||||||||||
Sbjct: 33261 ttagaaaatagaaaatcatt 33280



to top

>gb|AF083424.1|AF083424 Ateline herpesvirus 3 complete genome
          Length = 108409

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    caaaaaataacattcataaa 95
             ||||||||||||||||||||
Sbjct: 43689 caaaaaataacattcataaa 43670



to top

>emb|BX005431.3| Zebrafish DNA sequence from clone CH211-214G2 in linkage group 2,
              complete sequence
          Length = 200591

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    aacatcaaaaaagtagtcca 130
              ||||||||||||||||||||
Sbjct: 165797 aacatcaaaaaagtagtcca 165816



to top

>dbj|AK062703.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-B04, full
           insert sequence
          Length = 741

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 418 ccttgagaagcagaaccctt 437
           ||||||||||||||||||||
Sbjct: 388 ccttgagaagcagaaccctt 407



to top

>emb|AL929056.21| Zebrafish DNA sequence from clone CH211-227I14 in linkage group 8,
              complete sequence
          Length = 157468

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     tgcaaaaaataacattcata 93
              ||||||||||||||||||||
Sbjct: 120908 tgcaaaaaataacattcata 120927



to top

>gb|AC007198.6|AC007198 Homo sapiens, clone 18_A_13, complete sequence
          Length = 166977

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 472   cacttcagaggtgcactggg 491
             ||||||||||||||||||||
Sbjct: 41281 cacttcagaggtgcactggg 41300



to top

>emb|AL714024.31| Mouse DNA sequence from clone RP23-102H7 on chromosome 5, complete
             sequence
          Length = 213519

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    caaaaaataacattcataaa 95
             ||||||||||||||||||||
Sbjct: 21742 caaaaaataacattcataaa 21723



to top

>emb|AL844582.7| Mouse DNA sequence from clone RP23-234C7 on chromosome 2, complete
             sequence
          Length = 221723

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 576   tccaaagtcttgattgttgg 595
             ||||||||||||||||||||
Sbjct: 17699 tccaaagtcttgattgttgg 17718



to top

>emb|AL731678.17| Mouse DNA sequence from clone RP23-39H12 on chromosome X, complete
             sequence
          Length = 230186

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   ccacctttagaaaatagaaa 371
             ||||||||||||||||||||
Sbjct: 24127 ccacctttagaaaatagaaa 24108


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,840,754
Number of Sequences: 3902068
Number of extensions: 7840754
Number of successful extensions: 155664
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 155445
Number of HSP's gapped (non-prelim): 215
length of query: 715
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 692
effective length of database: 17,143,297,704
effective search space: 11863162011168
effective search space used: 11863162011168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top