ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26g13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E1A_ADE04 (P10407) Early E1A 28 kDa protein 30 1.9
2YAN9_SCHPO (Q10074) Hypothetical protein C3H1.09c in chromosome I 29 3.2
3FCG2B_HUMAN (P31994) Low affinity immunoglobulin gamma Fc region... 29 3.2
4FCG2C_HUMAN (P31995) Low affinity immunoglobulin gamma Fc region... 29 3.2
5REX_BACCR (Q81IS6) Redox-sensing transcriptional repressor rex 28 4.2
6REX_BACAN (Q81VE5) Redox-sensing transcriptional repressor rex 28 4.2
7REX_BACSU (O05521) Redox-sensing transcriptional repressor rex 28 5.5
8CP27A_RABIT (P17177) Cytochrome P450 27, mitochondrial precursor... 28 7.1

>E1A_ADE04 (P10407) Early E1A 28 kDa protein|
          Length = 257

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 112 VAHLFSVHCQPEPGFGKRIKDIHVLDSXEFLLASSACFFSATSIGISSPV 261
           V+  F++ C P PG G +  + H +++ +  +  + C+  A +  + SPV
Sbjct: 142 VSESFALDCPPLPGHGCKSCEFHRINTGDKAVLCALCYMRAYNHCVYSPV 191



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>YAN9_SCHPO (Q10074) Hypothetical protein C3H1.09c in chromosome I|
          Length = 656

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 154 FGKRIKDIHVLDSXEFLLASSACFFSATSIGISSPVGIFPAKLYVE 291
           FG ++K + +L+  E        F  A +I +S+P+ +FPA   +E
Sbjct: 513 FGSKVKTVVILNMPESTFTVIIQFLYAIAILLSTPLQLFPAIAIIE 558



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>FCG2B_HUMAN (P31994) Low affinity immunoglobulin gamma Fc region receptor II-b|
           precursor (Fc-gamma RII-b) (FcRII-b) (IgG Fc receptor
           II-b) (Fc-gamma-RIIb) (CD32 antigen) (CDw32)
          Length = 310

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 25  WVCVQTTNXINITNRDDHTPEQ*TASPVHVAHLFSVHCQPEPGF 156
           W+ V   + + +T R  H+PE  +    H  +L   H QP   F
Sbjct: 58  WINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRF 101



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>FCG2C_HUMAN (P31995) Low affinity immunoglobulin gamma Fc region receptor II-c|
           precursor (Fc-gamma RII-c) (FcRII-c) (IgG Fc receptor
           II-c) (Fc-gamma-RIIc) (CD32 antigen) (CDw32)
          Length = 323

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 25  WVCVQTTNXINITNRDDHTPEQ*TASPVHVAHLFSVHCQPEPGF 156
           W+ V   + + +T R  H+PE  +    H  +L   H QP   F
Sbjct: 58  WINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRF 101



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>REX_BACCR (Q81IS6) Redox-sensing transcriptional repressor rex|
          Length = 209

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 341 ELRXMVLVDRSNLGSDTSTYNFAGKIPTGLDMPIDVAEKKQAEE 210
           ++  + L+   NLG+    YNF     T ++M  DV+E+K   E
Sbjct: 82  DITRVALIGVGNLGTAFLHYNFTKNNNTKIEMAFDVSEEKVGTE 125



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>REX_BACAN (Q81VE5) Redox-sensing transcriptional repressor rex|
          Length = 209

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 341 ELRXMVLVDRSNLGSDTSTYNFAGKIPTGLDMPIDVAEKKQAEE 210
           ++  + L+   NLG+    YNF     T ++M  DV+E+K   E
Sbjct: 82  DITRVALIGVGNLGTAFLHYNFTKNNNTKIEMAFDVSEEKVGTE 125



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>REX_BACSU (O05521) Redox-sensing transcriptional repressor rex|
          Length = 215

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 359 KSFANCELRXMVLVDRSNLGSDTSTYNFAGKIPTGLDMPIDVAEKKQAEE 210
           K+    E+  ++L+   NLG+    YNF     T + M  D+ E K   E
Sbjct: 78  KTLDQDEMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTE 127



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>CP27A_RABIT (P17177) Cytochrome P450 27, mitochondrial precursor (EC|
           1.14.13.15) (Cytochrome P-450C27/25) (Sterol
           26-hydroxylase) (Sterol 27-hydroxylase) (Vitamin D(3)
           25-hydroxylase)
           (5-beta-cholestane-3-alpha,7-alpha,12-alpha-triol
           27-hydroxylase)
          Length = 535

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 151 PVLADNELRIDERHGQDLLFIAQVYDRHDWLCLXDLLSXRXPK 23
           PV  D +L  + R  QDL +     D HDW  L   L+ R  K
Sbjct: 128 PVRNDMQLWKEHRDHQDLAYGVFTTDGHDWYQLRQALNQRLLK 170


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,791,421
Number of Sequences: 219361
Number of extensions: 883697
Number of successful extensions: 2045
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2045
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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