Clone Name | rbasd26g06 |
---|---|
Clone Library Name | barley_pub |
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 260 bits (131), Expect = 3e-66 Identities = 149/156 (95%) Strand = Plus / Plus Query: 1 acacacaagtttgtatctanttgcncaaagggcaagctcnaaaacactcgaaacaccaaa 60 ||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||||| Sbjct: 135166 acacacaagtttgtatctacatgcacaaagtgcaagctccaaaacactcgaaacaccaaa 135225 Query: 61 tggtctacaagacaataaggtccatgattacaggttggttggtccataaacgctagagag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 135226 tggtctacaagacaataaggtccatgattacaggttggttggtccataaacgctggagag 135285 Query: 121 tcatcatgtccatgtgcatcaataagttgagtacct 156 |||||||||||||||||||||||| ||||||||||| Sbjct: 135286 tcatcatgtccatgtgcatcaataggttgagtacct 135321 Score = 260 bits (131), Expect = 3e-66 Identities = 149/156 (95%) Strand = Plus / Plus Query: 1 acacacaagtttgtatctanttgcncaaagggcaagctcnaaaacactcgaaacaccaaa 60 ||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||||| Sbjct: 95453 acacacaagtttgtatctacatgcacaaagtgcaagctccaaaacactcgaaacaccaaa 95512 Query: 61 tggtctacaagacaataaggtccatgattacaggttggttggtccataaacgctagagag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 95513 tggtctacaagacaataaggtccatgattacaggttggttggtccataaacgctggagag 95572 Query: 121 tcatcatgtccatgtgcatcaataagttgagtacct 156 |||||||||||||||||||||||| ||||||||||| Sbjct: 95573 tcatcatgtccatgtgcatcaataggttgagtacct 95608
>emb|Z83832.1|ASSGT Avena sativa mRNA for UDP-glucose:sterol glucosyltransferase Length = 2317 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Minus Query: 155 ctttttccttatggaaatcttatcatccaataactgtttagc 196 ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 456 ctttttccttacggaaatcttatcatccaataactgtttagc 415 Score = 56.0 bits (28), Expect = 9e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 277 ttatctcagtatcctttatcacccccggcatagtgcttgacctatggaggtt 328 |||| |||| |||||| ||||| || |||||||||||||| ||||||||||| Sbjct: 343 ttatttcagcatccttgatcactcctggcatagtgcttgatctatggaggtt 292
>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome Length = 859006 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Minus Query: 138 atcaataagttgagtaccttttt 160 ||||||||||||||||||||||| Sbjct: 814285 atcaataagttgagtaccttttt 814263
>gb|AC007956.5|AC007956 Homo sapiens chromosome 14 clones CTD-3211F8 and RP11-173A8 containing KIAA0317 gene, complete cds; and unknown gene, complete sequence Length = 233738 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 359 tgttgaattaaaaggaaatgat 380 |||||||||||||||||||||| Sbjct: 55100 tgttgaattaaaaggaaatgat 55079
>ref|XM_471170.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1830 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 167 ggaaatcttatcatccaataactgtttag 195 |||||| |||||||| ||||||||||||| Sbjct: 306 ggaaattttatcatcaaataactgtttag 278
>ref|XM_644429.1| Entamoeba histolytica HM-1:IMSS exonuclease (293.t00010) partial mRNA Length = 1887 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 117 agagtcatcatgtccatgtgcatcaataa 145 |||| |||| ||||||||||||||||||| Sbjct: 1563 agagacatcttgtccatgtgcatcaataa 1535
>emb|X56793.1|SERFBB S.enterica (group B) rfb gene cluster Length = 22080 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 279 atctcagtatcctttatcacc 299 ||||||||||||||||||||| Sbjct: 20912 atctcagtatcctttatcacc 20892
>gb|AE008792.1| Salmonella typhimurium LT2, section 96 of 220 of the complete genome Length = 22043 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 atctcagtatcctttatcacc 299 ||||||||||||||||||||| Sbjct: 5005 atctcagtatcctttatcacc 5025
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 167 ggaaatcttatcatccaataactgtttag 195 |||||| |||||||| ||||||||||||| Sbjct: 1983795 ggaaattttatcatcaaataactgtttag 1983823
>dbj|AK064088.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-C05, full insert sequence Length = 2363 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 167 ggaaatcttatcatccaataactgtttag 195 |||||| |||||||| ||||||||||||| Sbjct: 451 ggaaattttatcatcaaataactgtttag 423
>gb|U35435.1|SEU35435 Salmonella enterica galactosyl-1-phosphate transferase (rfbP4452(T-)) gene, complete cds Length = 1682 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 279 atctcagtatcctttatcacc 299 ||||||||||||||||||||| Sbjct: 847 atctcagtatcctttatcacc 827
>gb|U35434.1|SEU35434 Salmonella enterica galactosyl-1-phosphate transferase (rfbP4451(T-)) gene, complete cds Length = 1681 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 279 atctcagtatcctttatcacc 299 ||||||||||||||||||||| Sbjct: 846 atctcagtatcctttatcacc 826
>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06, complete sequence Length = 126447 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 167 ggaaatcttatcatccaataactgtttag 195 |||||| |||||||| ||||||||||||| Sbjct: 455 ggaaattttatcatcaaataactgtttag 483
>emb|AL663011.2|OSJN00215 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0080H08, complete sequence Length = 138127 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 167 ggaaatcttatcatccaataactgtttag 195 |||||| |||||||| ||||||||||||| Sbjct: 127032 ggaaattttatcatcaaataactgtttag 127060
>gb|AC145956.4| Gallus gallus BAC clone CH261-14N1 from chromosome unknown, complete sequence Length = 243969 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 367 taaaaggaaatgataacattt 387 ||||||||||||||||||||| Sbjct: 211827 taaaaggaaatgataacattt 211847
>gb|AC003992.2| Homo sapiens BAC clone CTA-250D13 from 7, complete sequence Length = 176109 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 aggaaatgataacattttat 390 |||||||||||||||||||| Sbjct: 118545 aggaaatgataacattttat 118564
>gb|AC124473.2| Mus musculus BAC clone RP24-86K23 from chromosome 3, complete sequence Length = 185436 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 tccttatggaaatcttatca 179 |||||||||||||||||||| Sbjct: 69280 tccttatggaaatcttatca 69261
>gb|AC109233.10| Mus musculus chromosome 16, clone RP23-219N5, complete sequence Length = 271253 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 attaaaaggaaatgataacatttt 388 ||||||||||||||| |||||||| Sbjct: 55868 attaaaaggaaatgagaacatttt 55845
>gb|AC115294.5| Mus musculus BAC clone RP23-97A19 from chromosome 3, complete sequence Length = 149451 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 tccttatggaaatcttatca 179 |||||||||||||||||||| Sbjct: 135599 tccttatggaaatcttatca 135580
>gb|AC146849.1| Pan troglodytes BAC clone RP43-163I11 from 7, complete sequence Length = 147837 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 aggaaatgataacattttat 390 |||||||||||||||||||| Sbjct: 94808 aggaaatgataacattttat 94827
>emb|CR962120.1|PTB065B04 Pan troglodytes chromosome X BAC PTB-065B04, complete sequence Length = 35005 Score = 40.1 bits (20), Expect = 5.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 379 ataacattttatactttc-caagtcacattat 409 |||||||||||||||||| ||||| ||||||| Sbjct: 11341 ataacattttatactttctcaagtaacattat 11372
>emb|AL513166.7| Human DNA sequence from clone RP11-261J10 on chromosome 1, complete sequence Length = 170817 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 aattaaaaggaaatgataac 383 |||||||||||||||||||| Sbjct: 41331 aattaaaaggaaatgataac 41312
>gb|BC036474.1| Homo sapiens gamma-aminobutyric acid (GABA) A receptor, alpha 4, mRNA (cDNA clone IMAGE:5259163) Length = 2700 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 taaaaggaaatgataacattttat 390 |||||||||| ||||||||||||| Sbjct: 1323 taaaaggaaaggataacattttat 1300
>gb|AC160756.7| Mus musculus chromosome 15, clone RP23-158H4, complete sequence Length = 194707 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 aaatgataacattttatact 393 |||||||||||||||||||| Sbjct: 29241 aaatgataacattttatact 29260
>gb|AC010016.6| Drosophila melanogaster 3L BAC RP98-10M10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174616 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aaaacactcgaaacaccaaa 60 |||||||||||||||||||| Sbjct: 16972 aaaacactcgaaacaccaaa 16991
>gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, complete sequence Length = 173808 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 367 taaaaggaaatgataacattttat 390 |||||||||| ||||||||||||| Sbjct: 92463 taaaaggaaaggataacattttat 92486
>gb|AC010558.4| Drosophila melanogaster 3L BAC RPCI98-1K9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170356 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aaaacactcgaaacaccaaa 60 |||||||||||||||||||| Sbjct: 135456 aaaacactcgaaacaccaaa 135475
>gb|AC130669.17| Mus musculus chromosome 15, clone RP24-84O5, complete sequence Length = 205231 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 aaatgataacattttatact 393 |||||||||||||||||||| Sbjct: 81274 aaatgataacattttatact 81255
>ref|NM_000809.2| Homo sapiens gamma-aminobutyric acid (GABA) A receptor, alpha 4 (GABRA4), mRNA Length = 11143 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 taaaaggaaatgataacattttat 390 |||||||||| ||||||||||||| Sbjct: 8953 taaaaggaaaggataacattttat 8930
>gb|AC158541.1| Pan troglodytes BAC clone CH251-19F24 from chromosome unknown, complete sequence Length = 186577 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 aggaaatgataacattttat 390 |||||||||||||||||||| Sbjct: 101314 aggaaatgataacattttat 101295
>gb|AC079112.4| Homo sapiens BAC clone RP11-67K11 from 2, complete sequence Length = 155888 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 ttatactttccaagtcacat 406 |||||||||||||||||||| Sbjct: 106867 ttatactttccaagtcacat 106886
>emb|AJ230699.1|MMAJ0699 Meles meles DNA, microsatellite marker, clone B13H01 Length = 375 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 369 aaaggaaatgataacattttatac 392 |||||||||||||| ||||||||| Sbjct: 203 aaaggaaatgataatattttatac 180
>dbj|AB084515.1| Candida parapsilosis cpr-c1 gene for conjugated polyketone reductase C1, complete cds Length = 1480 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aaaacactcgaaacaccaaa 60 |||||||||||||||||||| Sbjct: 633 aaaacactcgaaacaccaaa 652
>dbj|AP005268.1| Pan troglodytes DNA, chromosome 7 clone:PTB-029M21, complete sequence Length = 154715 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 aggaaatgataacattttat 390 |||||||||||||||||||| Sbjct: 14116 aggaaatgataacattttat 14097
>emb|BX664631.6| Zebrafish DNA sequence from clone DKEY-28H18 in linkage group 22, complete sequence Length = 220242 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ggaaatgataacattttata 391 |||||||||||||||||||| Sbjct: 119442 ggaaatgataacattttata 119461
>gb|AE003548.3| Drosophila melanogaster chromosome 3L, section 37 of 83 of the complete sequence Length = 244140 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aaaacactcgaaacaccaaa 60 |||||||||||||||||||| Sbjct: 146741 aaaacactcgaaacaccaaa 146760
>gb|AC154196.1| Mus musculus BAC clone RP24-76I6 from 16, complete sequence Length = 207701 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 attaaaaggaaatgataacatttt 388 ||||||||||||||| |||||||| Sbjct: 117467 attaaaaggaaatgagaacatttt 117444
>emb|BX072536.4| Mouse DNA sequence from clone RP23-5A21 on chromosome X, complete sequence Length = 246587 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 358 atgttgaattaaaaggaaatgataacat 385 ||||||||||||| ||||||||||||| Sbjct: 87887 atgttgaattaaatagaaatgataacat 87914
>emb|CT010571.7| Mouse DNA sequence from clone RP23-300L8 on chromosome 16, complete sequence Length = 218760 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 365 attaaaaggaaatgataacatttt 388 ||||||||||||||| |||||||| Sbjct: 34824 attaaaaggaaatgagaacatttt 34847 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,980,872 Number of Sequences: 3902068 Number of extensions: 2980872 Number of successful extensions: 54764 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 54679 Number of HSP's gapped (non-prelim): 86 length of query: 412 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 390 effective length of database: 17,147,199,772 effective search space: 6687407911080 effective search space used: 6687407911080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)