ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYI_METAC (Q8TN62) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 30 2.3
2SYI_METMA (Q8PSV9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 29 4.0

>SYI_METAC (Q8TN62) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1058

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 41  SKHQMVYKTIRSMITGWLVHKR*RVIMSMCINKLSTFFLMEI 166
           S+ Q V K +   ++G+L+HK  R I+   +  LS +++  I
Sbjct: 689 SRAQSVIKAVNEAMSGYLLHKAVREILEFALEDLSRWYIQLI 730



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>SYI_METMA (Q8PSV9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1058

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 41  SKHQMVYKTIRSMITGWLVHKR*RVIMSMCINKLSTFFLMEI 166
           S+ Q V K++   ++G+L+HK  R I+   +  LS +++  I
Sbjct: 689 SRAQSVVKSVDEAMSGYLLHKAVREILDFTLEDLSRWYIQLI 730


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,698,605
Number of Sequences: 219361
Number of extensions: 347396
Number of successful extensions: 804
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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