ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MC5R_PANTR (Q9TT23) Melanocortin receptor 5 (MC5-R) 30 1.5
2MC5R_HUMAN (P33032) Melanocortin receptor 5 (MC5-R) (MC-2) 30 1.5
3PHO85_KLULA (Q92241) Negative regulator of the PHO system (EC 2.... 30 1.5
4YCEL_CAEEL (Q94175) Hypothetical protein C43G2.4 in chromosome IV 29 2.6
5PACC_MAGGR (Q52B93) pH-response transcription factor pacC/RIM101 28 4.4
6ZBT39_HUMAN (O15060) Zinc finger and BTB domain-containing prote... 28 5.7

>MC5R_PANTR (Q9TT23) Melanocortin receptor 5 (MC5-R)|
          Length = 325

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -3

Query: 156 FLLVYACLKYVYILLVQWAGSILHGMWYQCSWFXIVF 46
           ++ ++  L+Y +I+  + +G+I+ G+W  C+   IVF
Sbjct: 141 YVTIFYALRYHHIMTARRSGAIIAGIWAFCTGCGIVF 177



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>MC5R_HUMAN (P33032) Melanocortin receptor 5 (MC5-R) (MC-2)|
          Length = 325

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -3

Query: 156 FLLVYACLKYVYILLVQWAGSILHGMWYQCSWFXIVF 46
           ++ ++  L+Y +I+  + +G+I+ G+W  C+   IVF
Sbjct: 141 YVTIFYALRYHHIMTARRSGAIIAGIWAFCTGCGIVF 177



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>PHO85_KLULA (Q92241) Negative regulator of the PHO system (EC 2.7.11.22)|
           (Serine/threonine-protein kinase PHO85)
          Length = 304

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 75  TTCHARWNQPTALIIYTHILGKHKPRESRNSCQRNSEHSDDD 200
           T     W Q T L  Y  +L  H PR+ +   Q N+E   DD
Sbjct: 227 TPVEQTWPQVTQLAKYNPLLPPHMPRDLKQLLQNNTEEVLDD 268



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>YCEL_CAEEL (Q94175) Hypothetical protein C43G2.4 in chromosome IV|
          Length = 399

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 117 LLVQWAGSILHGMWYQCSWFXIVFGFTAFTEVH 19
           LL++W GSI   +W +   F  +F F  F+  H
Sbjct: 12  LLLRWKGSIWRSVWRELFLFLFLFYFIRFSAPH 44



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>PACC_MAGGR (Q52B93) pH-response transcription factor pacC/RIM101|
          Length = 559

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
 Frame = +3

Query: 69  TDTTCHARWNQ-----PTALIIYTHILGKHKPRESRN----SCQRNS 182
           +D +   RWNQ     P+A  +Y HI  +H  R+S N    +C  NS
Sbjct: 48  SDDSLICRWNQCSERFPSAEALYDHICERHVGRKSTNNLNLTCHWNS 94



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>ZBT39_HUMAN (O15060) Zinc finger and BTB domain-containing protein 39|
          Length = 712

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 162 NSCQRNSEHSDDDVIHFGQVESLRL 236
           NSC  NSEHS D    FGQ++ L+L
Sbjct: 274 NSCLSNSEHSKDP--GFGQMDELQL 296


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,857,624
Number of Sequences: 219361
Number of extensions: 752295
Number of successful extensions: 1614
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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