ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470955.1| Oryza sativa (japonica cultivar-group), predic... 264 3e-67
2gb|AY106961.1| Zea mays PCO078813 mRNA sequence 234 3e-58
3gb|AY106065.1| Zea mays PCO096468 mRNA sequence 131 3e-27
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 94 7e-16
5emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4,... 94 7e-16
6ref|NM_104608.2| Arabidopsis thaliana unknown protein AT1G58280 ... 50 0.009
7ref|NM_179495.1| Arabidopsis thaliana catalytic AT1G58280 transc... 50 0.009
8dbj|AB028195.1| Arabidopsis thaliana ZW10 mRNA, partial cds 50 0.009
9gb|AC102032.9| Mus musculus chromosome 3, clone RP23-78J18, comp... 48 0.037
10emb|Z68295.1|CEC07C7 Caenorhabditis elegans Cosmid C07C7, comple... 46 0.14
11gb|AC147985.3| Mus musculus BAC clone RP24-402C11 from chromosom... 44 0.57
12gb|DQ191053.1| Glycine max clone DD4.6 SP-3 mRNA, complete cds 44 0.57
13gb|AY004241.1| Glycine max phosphoglycerate mutase-like protein ... 44 0.57
14gb|AY004240.1| Glycine max phosphoglycerate mutase-like protein ... 44 0.57
15gb|AC134591.4| Mus musculus BAC clone RP23-376L4 from chromosome... 44 0.57
16gb|AC158979.2| Mus musculus BAC clone RP23-218C24 from chromosom... 44 0.57
17gb|AF332862.1|AF332859S2 Mus musculus diadenosine triphosphate h... 44 0.57
18gb|AC118593.6| Mus musculus chromosome 19, clone RP24-464I2, com... 44 0.57
19emb|CR847897.15| Zebrafish DNA sequence from clone DKEY-90L8 in ... 42 2.3
20gb|AC158522.2| Mus musculus BAC clone RP23-400N21 from chromosom... 42 2.3
21gb|AC096668.1| Homo sapiens BAC clone RP11-379A23 from 2, comple... 42 2.3
22gb|AE000783.1| Borrelia burgdorferi B31, complete genome 42 2.3
23dbj|AB005247.2| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.3
24gb|AC151775.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 8.9
25gb|AC163672.4| Mus musculus BAC clone RP23-23B15 from chromosome... 40 8.9
26gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete se... 40 8.9
27gb|AC110816.7| Mus musculus BAC clone RP23-20P15 from chromosome... 40 8.9
28gb|AC121533.6| Mus musculus chromosome 9, clone RP24-555P22, com... 40 8.9
29gb|AC123066.4| Mus musculus BAC clone RP23-262I13 from chromosom... 40 8.9
30gb|AC132389.3| Mus musculus BAC clone RP23-448A4 from chromosome... 40 8.9
31gb|AC109247.14| Mus musculus chromosome 9, clone RP23-462C14, co... 40 8.9
32gb|AC124398.4| Mus musculus BAC clone RP24-349M24 from chromosom... 40 8.9
33gb|AC124492.4| Mus musculus BAC clone RP23-454I23 from chromosom... 40 8.9
34gb|AC132684.3| Mus musculus BAC clone RP23-277L20 from 9, comple... 40 8.9
35gb|AY367771.1| Triticum aestivum HMW glutenin subunit (1Bx14) ge... 40 8.9
36gb|AC159626.2| Mus musculus BAC clone RP24-209A23 from chromosom... 40 8.9
37gb|AC100803.11| Homo sapiens chromosome 8, clone CTD-3064M3, com... 40 8.9
38gb|AC093914.3| Homo sapiens BAC clone RP11-779N9 from 4, complet... 40 8.9
39gb|AC115080.13| Mus musculus chromosome 7, clone RP24-464M7, com... 40 8.9
40dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
41dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
42dbj|AK187396.1| Mus musculus cDNA, clone:Y0G0141K08, strand:minu... 40 8.9
43dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
44emb|BX001012.6| Zebrafish DNA sequence from clone CH211-11C20 in... 40 8.9
45emb|Z69239.1|SPAC1D4 S.pombe chromosome I cosmid c1D4 40 8.9
46gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence 40 8.9
47dbj|AP005792.5| Homo sapiens genomic DNA, chromosome 8q24, clone... 40 8.9
48dbj|AP005888.3| Homo sapiens genomic DNA, chromosome 8q24.3, clo... 40 8.9
49gb|AC132234.5| Mus musculus BAC clone RP24-496A9 from 3, complet... 40 8.9
50gb|AC139333.4| Mus musculus BAC clone RP24-83F12 from 3, complet... 40 8.9
51emb|AL808018.7| Mouse DNA sequence from clone RP23-473C10 on chr... 40 8.9
52gb|AC121109.5| Mus musculus chromosome 7, clone RP24-445I8, comp... 40 8.9
53dbj|AP003775.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.9 
>ref|XM_470955.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 828

 Score =  264 bits (133), Expect = 3e-67
 Identities = 241/277 (87%)
 Strand = Plus / Minus

                                                                       
Query: 345 tcgaccaacaccatcgaccggagctcacagttggcaaagctcttgcccagttcctctgct 404
           |||||||||||||||||||||||||||||||||||||||  |||||||| ||| |||  |
Sbjct: 737 tcgaccaacaccatcgaccggagctcacagttggcaaagtgcttgcccacttcttctctt 678

                                                                       
Query: 405 acggttggatgacactctttgccatacatgtttagggtgtgatacaagaaaccgcaatgg 464
           | |||||||||||||||  |||  |||||| ||| ||||||||| ||||| || | ||||
Sbjct: 677 atggttggatgacactccctgctgtacatgcttaaggtgtgatataagaatccactatgg 618

                                                                       
Query: 465 ctgacaatagctatctctttctcttctctggtccataaccagtcaaagaaattcatgccc 524
           || ||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||
Sbjct: 617 cttacaatagctatctctttctcttcccttgtccataaccagtcaatgaacttcatgccc 558

                                                                       
Query: 525 ctggcagcaacagactcatttggttctatgacatcgggtccccaaagaacatcttcatca 584
           || || || |||||   ||||| |||| ||||||  ||| ||||||| ||||||||||||
Sbjct: 557 ctagctgcgacagatgaatttgcttctctgacatttggttcccaaagtacatcttcatca 498

                                                
Query: 585 ttctctatcaaggaaaaatcaatggcaggaaagagag 621
           ||||||||||  |||||||||||||||||||||||||
Sbjct: 497 ttctctatcagcgaaaaatcaatggcaggaaagagag 461
to top
>gb|AY106961.1| Zea mays PCO078813 mRNA sequence
          Length = 1308

 Score =  234 bits (118), Expect = 3e-58
 Identities = 352/430 (81%)
 Strand = Plus / Minus

                                                                        
Query: 224  tcagttcttgttagcttcttcagcctgcttcttctctgcgacatcgctaggcatatcaag 283
            ||||||||| | |||||| ||| |||||||||| ||||| | ||| ||||||| ||| ||
Sbjct: 1009 tcagttcttctgagcttcatcaacctgcttcttatctgcaatatcactaggcacatctag 950

                                                                        
Query: 284  cccggtcggtatcttccccgcgaagttgtatgtagaggtatccgatccaaggttacttct 343
            |||||| ||  |||| || ||  ||||| || | || | ||  || |||||  | |||||
Sbjct: 949  cccggttggattcttgccagcatagttgaatcttgacgaatatgacccaagcatgcttct 890

                                                                        
Query: 344  gtcgaccaacaccatcgaccggagctcacagttggcaaagctcttgcccagttcctctgc 403
            ||| ||||||||||||||||| ||||| ||||| ||||||  |||||  | ||| |||  
Sbjct: 889  gtcaaccaacaccatcgaccgtagctcgcagtttgcaaagtgcttgctaacttcgtctct 830

                                                                        
Query: 404  tacggttggatgacactctttgccatacatgtttagggtgtgatacaagaaaccgcaatg 463
            || ||||||||| ||||| ||||  |||||| ||| ||||||| |||||||||| |  ||
Sbjct: 829  tatggttggatggcactccttgctgtacatgcttaaggtgtgaaacaagaaaccactgtg 770

                                                                        
Query: 464  gctgacaatagctatctctttctcttctctggtccataaccagtcaaagaaattcatgcc 523
             ||||||||||||||||||||||||||||| ||||| |||||||| |  || ||||| ||
Sbjct: 769  actgacaatagctatctctttctcttctcttgtccacaaccagtccataaacttcatacc 710

                                                                        
Query: 524  cctggcagcaacagactcatttggttctatgacatcgggtccccaaagaacatcttcatc 583
            |||    || |||| |||||||| |||| | ||||| ||| |||||||||||||| ||||
Sbjct: 709  cctcaatgcgacagcctcatttgtttctctcacatctggttcccaaagaacatctccatc 650

                                                                        
Query: 584  attctctatcaaggaaaaatcaatggcaggaaagagagtacggtatcttgttatgctgct 643
            |||||||||||| ||||||||||||||||| |||||||  ||||||  ||||||||| ||
Sbjct: 649  attctctatcaatgaaaaatcaatggcagggaagagaggccggtattctgttatgctcct 590

                      
Query: 644  cctcttgtca 653
            ||||||||||
Sbjct: 589  cctcttgtca 580
to top
>gb|AY106065.1| Zea mays PCO096468 mRNA sequence
          Length = 1347

 Score =  131 bits (66), Expect = 3e-27
 Identities = 237/294 (80%)
 Strand = Plus / Minus

                                                                       
Query: 360 gaccggagctcacagttggcaaagctcttgcccagttcctctgctacggttggatgacac 419
           ||||||||||| ||||| ||||||  ||||| || ||| | |||||| |||||||| |||
Sbjct: 879 gaccggagctcgcagtttgcaaagtacttgctcacttcttgtgctactgttggatggcac 820

                                                                       
Query: 420 tctttgccatacatgtttagggtgtgatacaagaaaccgcaatggctgacaatagctatc 479
           |||||||  ||||||   | ||| ||    || ||||||| |||| |||| || ||||||
Sbjct: 819 tctttgctgtacatgcgcaaggtatggcttaataaaccgctatgggtgacgatggctatc 760

                                                                       
Query: 480 tctttctcttctctggtccataaccagtcaaagaaattcatgcccctggcagcaacagac 539
           ||| |||||||||| ||||||| |||||||| ||| ||||| |||||  | || |  |||
Sbjct: 759 tctctctcttctcttgtccatagccagtcaatgaacttcatacccctttctgcgagtgac 700

                                                                       
Query: 540 tcatttggttctatgacatcgggtccccaaagaacatcttcatcattctctatcaaggaa 599
           |||   | |||| ||||||| ||| |||| ||||||||||| ||| |||||||||  |||
Sbjct: 699 tcaaaggtttctctgacatctggtacccagagaacatcttcgtcactctctatcagcgaa 640

                                                                 
Query: 600 aaatcaatggcaggaaagagagtacggtatcttgttatgctgctcctcttgtca 653
           |||||||||||||| ||||||| ||||||   ||| ||||| ||||||||||||
Sbjct: 639 aaatcaatggcagggaagagagcacggtactctgtgatgctcctcctcttgtca 586
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 101/119 (84%)
 Strand = Plus / Minus

                                                                          
Query: 386    cttgcccagttcctctgctacggttggatgacactctttgccatacatgtttagggtgtg 445
              |||||||| ||| |||  || |||||||||||||||  |||  |||||| ||| ||||||
Sbjct: 171873 cttgcccacttcttctcttatggttggatgacactccctgctgtacatgcttaaggtgtg 171814

                                                                         
Query: 446    atacaagaaaccgcaatggctgacaatagctatctctttctcttctctggtccataacc 504
              ||| ||||| || | |||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 171813 atataagaatccactatggcttacaatagctatctctttctcttcccttgtccataacc 171755



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                       
Query: 345    tcgaccaacaccatcgaccggagctcacagttggcaaagct 385
              |||||||||||||||||||||||||||||||||||||||||
Sbjct: 172242 tcgaccaacaccatcgaccggagctcacagttggcaaagct 172202



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                          
Query: 502    accagtcaaagaaattcatgcccctggcagcaacagactcatttggttctatgacatcgg 561
              ||||||||| ||| ||||||||||| || || |||||   ||||| |||| ||||||  |
Sbjct: 171202 accagtcaatgaacttcatgcccctagctgcgacagatgaatttgcttctctgacatttg 171143

                                              
Query: 562    gtccccaaagaacatcttcatcattctctatc 593
              || ||||||| |||||||||||||||||||||
Sbjct: 171142 gttcccaaagtacatcttcatcattctctatc 171111



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 597    gaaaaatcaatggcaggaaagagag 621
              |||||||||||||||||||||||||
Sbjct: 170995 gaaaaatcaatggcaggaaagagag 170971
to top
>emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0068L06,
              complete sequence
          Length = 145517

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 101/119 (84%)
 Strand = Plus / Minus

                                                                          
Query: 386    cttgcccagttcctctgctacggttggatgacactctttgccatacatgtttagggtgtg 445
              |||||||| ||| |||  || |||||||||||||||  |||  |||||| ||| ||||||
Sbjct: 103160 cttgcccacttcttctcttatggttggatgacactccctgctgtacatgcttaaggtgtg 103101

                                                                         
Query: 446    atacaagaaaccgcaatggctgacaatagctatctctttctcttctctggtccataacc 504
              ||| ||||| || | |||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 103100 atataagaatccactatggcttacaatagctatctctttctcttcccttgtccataacc 103042



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                       
Query: 345    tcgaccaacaccatcgaccggagctcacagttggcaaagct 385
              |||||||||||||||||||||||||||||||||||||||||
Sbjct: 103529 tcgaccaacaccatcgaccggagctcacagttggcaaagct 103489



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                          
Query: 502    accagtcaaagaaattcatgcccctggcagcaacagactcatttggttctatgacatcgg 561
              ||||||||| ||| ||||||||||| || || |||||   ||||| |||| ||||||  |
Sbjct: 102489 accagtcaatgaacttcatgcccctagctgcgacagatgaatttgcttctctgacatttg 102430

                                              
Query: 562    gtccccaaagaacatcttcatcattctctatc 593
              || ||||||| |||||||||||||||||||||
Sbjct: 102429 gttcccaaagtacatcttcatcattctctatc 102398



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 597    gaaaaatcaatggcaggaaagagag 621
              |||||||||||||||||||||||||
Sbjct: 102282 gaaaaatcaatggcaggaaagagag 102258
to top
>ref|NM_104608.2| Arabidopsis thaliana unknown protein AT1G58280 transcript variant
           AT1G58280.1 mRNA, complete cds
          Length = 1068

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 573 acatcttcatcattctctatcaaggaaaaatcaatggcagg 613
           |||||||||||| | |||||||| ||||||||||| |||||
Sbjct: 577 acatcttcatcagtttctatcaatgaaaaatcaatcgcagg 537
to top
>ref|NM_179495.1| Arabidopsis thaliana catalytic AT1G58280 transcript variant
           AT1G58280.2 mRNA, complete cds
          Length = 1183

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 573 acatcttcatcattctctatcaaggaaaaatcaatggcagg 613
           |||||||||||| | |||||||| ||||||||||| |||||
Sbjct: 692 acatcttcatcagtttctatcaatgaaaaatcaatcgcagg 652
to top
>dbj|AB028195.1| Arabidopsis thaliana ZW10 mRNA, partial cds
          Length = 1066

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 573 acatcttcatcattctctatcaaggaaaaatcaatggcagg 613
           |||||||||||| | |||||||| ||||||||||| |||||
Sbjct: 577 acatcttcatcagtttctatcaatgaaaaatcaatcgcagg 537
to top
>gb|AC102032.9| Mus musculus chromosome 3, clone RP23-78J18, complete sequence
          Length = 194207

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 68     gacaacaaatcagataaacataaccaat 95
              ||||||||||||| ||||||||||||||
Sbjct: 122430 gacaacaaatcagctaaacataaccaat 122457
to top
>emb|Z68295.1|CEC07C7 Caenorhabditis elegans Cosmid C07C7, complete sequence
          Length = 21944

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 607  tggcaggaaagagagtacggtat 629
            |||||||||||||||||||||||
Sbjct: 7710 tggcaggaaagagagtacggtat 7688
to top
>gb|AC147985.3| Mus musculus BAC clone RP24-402C11 from chromosome 19, complete
             sequence
          Length = 170479

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 478   tctctttctcttctctggtcca 499
             ||||||||||||||||||||||
Sbjct: 41258 tctctttctcttctctggtcca 41237
to top
>gb|DQ191053.1| Glycine max clone DD4.6 SP-3 mRNA, complete cds
          Length = 534

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 579 tcatcattctctatcaaggaaaaatcaatggcaggaaa 616
           |||||||| |||||||| ||||||||||| || |||||
Sbjct: 93  tcatcattttctatcaatgaaaaatcaatagctggaaa 56
to top
>gb|AY004241.1| Glycine max phosphoglycerate mutase-like protein (PGM) mRNA,
           complete cds
          Length = 1040

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 579 tcatcattctctatcaaggaaaaatcaatggcaggaaa 616
           |||||||| |||||||| ||||||||||| || |||||
Sbjct: 563 tcatcattttctatcaatgaaaaatcaatagctggaaa 526
to top
>gb|AY004240.1| Glycine max phosphoglycerate mutase-like protein (PGM) mRNA,
           complete cds
          Length = 1150

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 579 tcatcattctctatcaaggaaaaatcaatggcaggaaa 616
           |||||||| |||||||| ||||||||||| || |||||
Sbjct: 590 tcatcattttctatcaatgaaaaatcaatagctggaaa 553
to top
>gb|AC134591.4| Mus musculus BAC clone RP23-376L4 from chromosome 19, complete sequence
          Length = 222814

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 478    tctctttctcttctctggtcca 499
              ||||||||||||||||||||||
Sbjct: 212567 tctctttctcttctctggtcca 212546
to top
>gb|AC158979.2| Mus musculus BAC clone RP23-218C24 from chromosome 14, complete sequence
          Length = 216848

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 596    ggaaaaatcaatggcaggaaag 617
              ||||||||||||||||||||||
Sbjct: 124021 ggaaaaatcaatggcaggaaag 124000
to top
>gb|AF332862.1|AF332859S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, intron 5,
             partial sequence
          Length = 166617

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 596   ggaaaaatcaatggcaggaaag 617
             ||||||||||||||||||||||
Sbjct: 23664 ggaaaaatcaatggcaggaaag 23643
to top
>gb|AC118593.6| Mus musculus chromosome 19, clone RP24-464I2, complete sequence
          Length = 126059

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 478   tctctttctcttctctggtcca 499
             ||||||||||||||||||||||
Sbjct: 61360 tctctttctcttctctggtcca 61339
to top
>emb|CR847897.15| Zebrafish DNA sequence from clone DKEY-90L8 in linkage group 8,
             complete sequence
          Length = 164571

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 471   atagctatctctttctcttctctggtcca 499
             |||| ||| ||||||||||||||||||||
Sbjct: 77776 atagatatttctttctcttctctggtcca 77748
to top
>gb|AC158522.2| Mus musculus BAC clone RP23-400N21 from chromosome 14, complete sequence
          Length = 209322

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 43     tcccatgaatttgggtatgcg 63
              |||||||||||||||||||||
Sbjct: 149694 tcccatgaatttgggtatgcg 149674
to top
>gb|AC096668.1| Homo sapiens BAC clone RP11-379A23 from 2, complete sequence
          Length = 75970

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 507   tcaaagaaattcatgcccctg 527
             |||||||||||||||||||||
Sbjct: 62062 tcaaagaaattcatgcccctg 62082
to top
>gb|AE000783.1| Borrelia burgdorferi B31, complete genome
          Length = 910724

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 369    tcacagttggcaaagctcttg 389
              |||||||||||||||||||||
Sbjct: 389911 tcacagttggcaaagctcttg 389891
to top
>dbj|AB005247.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXA21
          Length = 87841

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 586   tctctatcaaggaaaaatcaa 606
             |||||||||||||||||||||
Sbjct: 74069 tctctatcaaggaaaaatcaa 74049
to top
>gb|AC151775.1| Ornithorhynchus anatinus chromosome UNK clone OABb-307A1, complete
              sequence
          Length = 195598

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    gcttcttcagcctgcttctt 256
              ||||||||||||||||||||
Sbjct: 151567 gcttcttcagcctgcttctt 151548
to top
>gb|AC163672.4| Mus musculus BAC clone RP23-23B15 from chromosome 3, complete sequence
          Length = 190599

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     ataagtccttattcccatga 50
              ||||||||||||||||||||
Sbjct: 183886 ataagtccttattcccatga 183905
to top
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence
          Length = 285506

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    tctcagttcattgtcagcca 173
              ||||||||||||||||||||
Sbjct: 185365 tctcagttcattgtcagcca 185384
to top
>gb|AC110816.7| Mus musculus BAC clone RP23-20P15 from chromosome 12, complete sequence
          Length = 216095

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     ttcccatgaatttgggtatg 61
              ||||||||||||||||||||
Sbjct: 172527 ttcccatgaatttgggtatg 172546
to top
>gb|AC121533.6| Mus musculus chromosome 9, clone RP24-555P22, complete sequence
          Length = 175009

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   cagttggcaaagctcttgcc 391
             ||||||||||||||||||||
Sbjct: 25172 cagttggcaaagctcttgcc 25191
to top
>gb|AC123066.4| Mus musculus BAC clone RP23-262I13 from chromosome 19, complete
            sequence
          Length = 206333

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 243  tcagcctgcttcttctctgc 262
            ||||||||||||||||||||
Sbjct: 8564 tcagcctgcttcttctctgc 8583
to top
>gb|AC132389.3| Mus musculus BAC clone RP23-448A4 from chromosome 19, complete sequence
          Length = 165998

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   tcagcctgcttcttctctgc 262
             ||||||||||||||||||||
Sbjct: 35334 tcagcctgcttcttctctgc 35315
to top
>gb|AC109247.14| Mus musculus chromosome 9, clone RP23-462C14, complete sequence
          Length = 225020

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 372    cagttggcaaagctcttgcc 391
              ||||||||||||||||||||
Sbjct: 215962 cagttggcaaagctcttgcc 215981
to top
>gb|AC124398.4| Mus musculus BAC clone RP24-349M24 from chromosome 12, complete
             sequence
          Length = 176369

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   tcttgcccagttcctctgct 404
             ||||||||||||||||||||
Sbjct: 93063 tcttgcccagttcctctgct 93082
to top
>gb|AC124492.4| Mus musculus BAC clone RP23-454I23 from chromosome 12, complete sequence
          Length = 176782

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     ttcccatgaatttgggtatg 61
              ||||||||||||||||||||
Sbjct: 136913 ttcccatgaatttgggtatg 136894
to top
>gb|AC132684.3| Mus musculus BAC clone RP23-277L20 from 9, complete sequence
          Length = 182976

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 372    cagttggcaaagctcttgcc 391
              ||||||||||||||||||||
Sbjct: 168178 cagttggcaaagctcttgcc 168159
to top
>gb|AY367771.1| Triticum aestivum HMW glutenin subunit (1Bx14) gene, complete cds
          Length = 4021

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  tctcagttcattgtcagcca 173
            ||||||||||||||||||||
Sbjct: 3715 tctcagttcattgtcagcca 3734
to top
>gb|AC159626.2| Mus musculus BAC clone RP24-209A23 from chromosome 12, complete
             sequence
          Length = 157411

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 475   ctatctctttctcttctctg 494
             ||||||||||||||||||||
Sbjct: 69697 ctatctctttctcttctctg 69678
to top
>gb|AC100803.11| Homo sapiens chromosome 8, clone CTD-3064M3, complete sequence
          Length = 152418

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 369    tcacagttggcaaagctctt 388
              ||||||||||||||||||||
Sbjct: 130462 tcacagttggcaaagctctt 130443
to top
>gb|AC093914.3| Homo sapiens BAC clone RP11-779N9 from 4, complete sequence
          Length = 170536

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   ctatctctttctcttctctg 494
             ||||||||||||||||||||
Sbjct: 86491 ctatctctttctcttctctg 86510
to top
>gb|AC115080.13| Mus musculus chromosome 7, clone RP24-464M7, complete sequence
          Length = 158221

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   tctattctcagttcattgtc 168
             ||||||||||||||||||||
Sbjct: 58151 tctattctcagttcattgtc 58132
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 541     catttggttctatgacatcg 560
               ||||||||||||||||||||
Sbjct: 5134167 catttggttctatgacatcg 5134186
to top
>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
           BAC clone:OJ1715_A07
          Length = 130907

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 541 catttggttctatgacatcg 560
           ||||||||||||||||||||
Sbjct: 881 catttggttctatgacatcg 900
to top
>dbj|AK187396.1| Mus musculus cDNA, clone:Y0G0141K08, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000040406, based on BLAT search
          Length = 167

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 cttcttcagcctgcttcttc 257
           ||||||||||||||||||||
Sbjct: 93  cttcttcagcctgcttcttc 74
to top
>dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1118_E12
          Length = 119691

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 541   catttggttctatgacatcg 560
             ||||||||||||||||||||
Sbjct: 90334 catttggttctatgacatcg 90353
to top
>emb|BX001012.6| Zebrafish DNA sequence from clone CH211-11C20 in linkage group 4,
             complete sequence
          Length = 158481

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   gtaaaagaatcaaagacatc 206
             ||||||||||||||||||||
Sbjct: 22300 gtaaaagaatcaaagacatc 22319
to top
>emb|Z69239.1|SPAC1D4 S.pombe chromosome I cosmid c1D4
          Length = 31201

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   tgagcaataaacagcaagtc 132
             ||||||||||||||||||||
Sbjct: 24513 tgagcaataaacagcaagtc 24494
to top
>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence
          Length = 339089

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 575    atcttcatcattctctatca 594
              ||||||||||||||||||||
Sbjct: 327469 atcttcatcattctctatca 327488
to top
>dbj|AP005792.5| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1533H12, complete
              sequence
          Length = 141371

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 369    tcacagttggcaaagctctt 388
              ||||||||||||||||||||
Sbjct: 137454 tcacagttggcaaagctctt 137435
to top
>dbj|AP005888.3| Homo sapiens genomic DNA, chromosome 8q24.3, clone: KB1897C9, complete
             sequence
          Length = 46561

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   tcacagttggcaaagctctt 388
             ||||||||||||||||||||
Sbjct: 26084 tcacagttggcaaagctctt 26065
to top
>gb|AC132234.5| Mus musculus BAC clone RP24-496A9 from 3, complete sequence
          Length = 127400

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 227   gttcttgttagcttcttcagcctg 250
             |||||||||| |||||||||||||
Sbjct: 54229 gttcttgttatcttcttcagcctg 54252
to top
>gb|AC139333.4| Mus musculus BAC clone RP24-83F12 from 3, complete sequence
          Length = 162197

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     ataagtccttattcccatga 50
              ||||||||||||||||||||
Sbjct: 111064 ataagtccttattcccatga 111045
to top
>emb|AL808018.7| Mouse DNA sequence from clone RP23-473C10 on chromosome X, complete
             sequence
          Length = 172723

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    ttcccatgaatttgggtatg 61
             ||||||||||||||||||||
Sbjct: 16859 ttcccatgaatttgggtatg 16840
to top
>gb|AC121109.5| Mus musculus chromosome 7, clone RP24-445I8, complete sequence
          Length = 167819

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    tctattctcagttcattgtc 168
              ||||||||||||||||||||
Sbjct: 137296 tctattctcagttcattgtc 137277
to top
>dbj|AP003775.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-206H19, complete
             sequences
          Length = 179680

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 597   gaaaaatcaatggcaggaaa 616
             ||||||||||||||||||||
Sbjct: 63390 gaaaaatcaatggcaggaaa 63409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,977,688
Number of Sequences: 3902068
Number of extensions: 5977688
Number of successful extensions: 116214
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116031
Number of HSP's gapped (non-prelim): 181
length of query: 655
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 632
effective length of database: 17,143,297,704
effective search space: 10834564148928
effective search space used: 10834564148928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top