>Y4844_ARATH (O49453) Protein At4g28440|
          Length = 153

 Score =  135 bits (341), Expect = 7e-32
 Identities = 65/107 (60%), Positives = 80/107 (74%), Gaps = 3/107 (2%)
 Frame = -3

Query: 609 PSPAGHTLVAKVLSSKTVL---QKARATGGPGPAAKPTRIAECLIGDETGCVLFTARNDQ 439
           P   GHTL  KV+ +  V+   +K R        ++P+RI ECLIGDETGC+LFTARNDQ
Sbjct: 30  PGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQ 89

Query: 438 VDVLKPGNTVIIRNAKIDMFKGSMRLAVDKWGRVEVTEPASFGVKED 298
           VD++KPG TVI+RN++IDMFKG+MRL VDKWGR+E T  ASF VKED
Sbjct: 90  VDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 136

>RPOC_CAUCR (Q9AAU1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1396

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -3

Query: 441  QVDVLKPGNTVIIRNAKIDM--FKGSMRLAVDKWGRVEVTEPASFGV 307
            +V++L+PG+T +I+   +D   F      A+ + GR  VT+P   G+
Sbjct: 1259 KVEILEPGDTGLIKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGI 1305

>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase COP1) (Constitutive
           photomorphogenesis protein 1 homolog) (hCOP1)
          Length = 731

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -3

Query: 618 SSSPSPAGHTLVAKVLSSKTVLQKARATGGPGPAAKPTRIAECLIGDETGCV 463
           SSSPSP    + A  L S  V Q A  +GG G   +P  +A  + G   G V
Sbjct: 32  SSSPSPPSVAVSAAALVSGGVAQ-AAGSGGLGGPVRPVLVAPAVSGSGGGAV 82

>TEAD4_MOUSE (Q62296) Transcriptional enhancer factor TEF-3 (TEA domain family|
           member 4) (TEAD-4) (ETF-related factor 2) (ETFR-2)
           (TEF-1-related factor 1) (TEF-1-related factor FR-19)
           (RTEF-1)
          Length = 427

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 428 NTSTWSLRAVKRTQPVSSPMRHSAILVGLAAGPGPPVARAFWRTVL 565
           N +  S+ A+   Q VS+   HS +   LA GPG P    FW+  L
Sbjct: 117 NKALQSMAAMSSAQIVSATAFHSKM--ALARGPGYPAISGFWQGAL 160

>TEAD4_HUMAN (Q15561) Transcriptional enhancer factor TEF-3 (TEA domain family|
           member 4) (TEAD-4) (Transcription factor RTEF-1)
          Length = 427

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 443 SLRAVKRTQPVSSPMRHSAILVGLAAGPGPPVARAFWRTVL 565
           S+ A+   Q +S+   HS++   LA GPG P    FW+  L
Sbjct: 122 SMAAMSSAQIISATAFHSSM--ALARGPGRPAVSGFWQGAL 160

>RR2_PORPU (P51249) Chloroplast 30S ribosomal protein S2|
          Length = 241

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = -3

Query: 507 TRIAECL-IGDETGCVLFTARNDQV-DVLKPGNTVIIRNAKIDMFKGSMRLAVDKWGRVE 334
           T I ECL +G  T C+L T  + ++ ++  P N   IR+ K+ + K +  +   K+G++E
Sbjct: 171 TAIQECLKLGIPTICILDTNCSPEIINIPIPANDDAIRSIKLIIGKIADAIYEGKYGQME 230

Query: 333 VTE 325
            TE
Sbjct: 231 PTE 233

>CARA_YERPS (Q66ER8) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 391

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = -3

Query: 597 GHTLVAKVLSSKTVLQKARATGGPGPAAKPTRIAECLIGDETGCVLFTARNDQVDVLKPG 418
           GH L+A    +KTV  K    GG  P              +  CV+ TA+N    V +  
Sbjct: 271 GHQLLALASGAKTVKMKFGHHGGNHPVKDL----------DASCVMITAQNHGFAVDETS 320

Query: 417 NTVIIRNAKIDMFKGSMR 364
               +R   + +F GS++
Sbjct: 321 LPSNLRTTHVSLFDGSLQ 338

>CARA_YERPE (Q8ZIL5) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 391

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = -3

Query: 597 GHTLVAKVLSSKTVLQKARATGGPGPAAKPTRIAECLIGDETGCVLFTARNDQVDVLKPG 418
           GH L+A    +KTV  K    GG  P              +  CV+ TA+N    V +  
Sbjct: 271 GHQLLALASGAKTVKMKFGHHGGNHPVKDL----------DASCVMITAQNHGFAVDETS 320

Query: 417 NTVIIRNAKIDMFKGSMR 364
               +R   + +F GS++
Sbjct: 321 LPSNLRTTHVSLFDGSLQ 338

>Y486_MYCPN (P75299) Hypothetical protein MPN486 (P02_orf147)|
          Length = 147

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 350 LSTASLIDPLNISIFALRIMTVLPGFNTSTWSLRAVKRTQPVSSPMRHSAILVGLAAGP 526
           LS+   +D    ++ +   + +LP    S WS+ AV    P+ +P R   +   L A P
Sbjct: 23  LSSGFWLDLFESTLTSGNELVLLPPTRYSYWSIMAVANPTPLKAPRRLDLVTKSLLAAP 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,496,456
Number of Sequences: 219361
Number of extensions: 1441641
Number of successful extensions: 4038
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4035
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)