ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26f17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_189191.1| Oryza sativa (japonica cultivar-group), predic... 293 3e-76
2dbj|AK058273.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 3e-76
3gb|BT018899.1| Zea mays clone EL01T0207E03.d mRNA sequence 287 2e-74
4gb|AY105873.1| Zea mays PCO094136 mRNA sequence 287 2e-74
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 236 7e-59
6dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic D... 236 7e-59
7dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic D... 236 7e-59
8gb|U92838.1|MMSALH06 Mus musculus sialoadhesin gene, exons 8, 9,... 42 2.0
9gb|AC121959.3| Mus musculus BAC clone RP24-247N18 from chromosom... 42 2.0
10emb|AL035409.15|HS564M11 Human DNA sequence from clone RP4-564M1... 42 2.0
11gb|AC096725.3| Homo sapiens BAC clone RP11-25L5 from 4, complete... 42 2.0
12gb|AC164560.3| Mus musculus BAC clone RP23-192D6 from chromosome... 42 2.0
13emb|AL831736.15| Mouse DNA sequence from clone RP23-32L15 on chr... 42 2.0
14ref|XM_642090.1| Dictyostelium discoideum SNF2-related domain-co... 40 7.8
15gb|AC125444.9| Mus musculus chromosome 1, clone RP24-499L20, com... 40 7.8
16gb|AC138214.8| Mus musculus chromosome 1, clone RP23-404A6, comp... 40 7.8
17gb|AC137123.7| Mus musculus chromosome 15, clone RP23-401L15, co... 40 7.8
18gb|AC157983.16| Medicago truncatula clone mth2-130n5, complete s... 40 7.8
19emb|AL158091.31| Human DNA sequence from clone RP5-824A14 on chr... 40 7.8
20emb|BX890581.13| Zebrafish DNA sequence from clone CH211-222O19 ... 40 7.8
21emb|AJ606381.1| Staphylococcus aureus partial spa gene for prote... 40 7.8
22emb|CR354427.7| Zebrafish DNA sequence from clone DKEY-263N17 in... 40 7.8
23gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, comp... 40 7.8
24ref|XM_684436.1| PREDICTED: Danio rerio similar to apoptosis-ind... 40 7.8
25ref|XM_680044.1| PREDICTED: Danio rerio similar to apoptosis-ind... 40 7.8
26gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno... 40 7.8
27gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, comp... 40 7.8
28emb|AL929193.19| Zebrafish DNA sequence from clone CH211-274P24 ... 40 7.8
29emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in... 40 7.8
30gb|AC005245.1|AC005245 Homo sapiens chromosome 17, clone hRPK.64... 40 7.8

>ref|NM_189191.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3582

 Score =  293 bits (148), Expect = 3e-76
 Identities = 328/388 (84%)
 Strand = Plus / Minus

                                                                        
Query: 178  gaacttagggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactg 237
            |||| ||||| ||||||||| ||||| || ||||||||||| || | ||||||||| |||
Sbjct: 3524 gaacctagggtagtcattcccacagcactttggtacaagtcttttagccttggcatgctg 3465

                                                                        
Query: 238  atcacgactgtaacaacagaaactccaacaataagaggtaaaactggggctggggtcagt 297
            || || | || ||  || |||||||| ||||||||||| || || |||||||| || | |
Sbjct: 3464 atgaccaatgcaatcacggaaactccgacaataagaggaaatacaggggctggagttaat 3405

                                                                        
Query: 298  tcctgtttgtgatgccgctcttcagttttatatttaagaggaccaacatgaatctgaggt 357
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3404 tcctgtttgtgatgtcgctcttcggttttatatttaagaggaccaacatgaatctgaggt 3345

                                                                        
Query: 358  tgctcttctaggtcaacttcaaccaactccgattcaaatatattggtatgtgatggaagg 417
            ||||  || | |||||||||||| | ||| || |||||| ||| ||||||||||||||| 
Sbjct: 3344 tgcttgtccaagtcaacttcaactatctctgactcaaatctatgggtatgtgatggaaga 3285

                                                                        
Query: 418  ccagaccgaagctgaacaaaatgctttccttcgggtaaatttcttacttcaacgtggtag 477
            ||||| ||||||||||||| |||||||||||  || |||||   |||||| | || ||| 
Sbjct: 3284 ccagaacgaagctgaacaagatgctttccttttggcaaattctgtacttcgaagtagtac 3225

                                                                        
Query: 478  gaaggaggaacaggaaccacagattctattctagaagggtcaacagctgatctaatttca 537
            ||  |||||||||| |  |||||||||||||||||||||||  |||||||||||||||||
Sbjct: 3224 gagagaggaacagggagtacagattctattctagaagggtctgcagctgatctaatttca 3165

                                        
Query: 538  acagataaatgtggctgcaacatatcaa 565
            ||||| |  ||||| |||||||| ||||
Sbjct: 3164 acagacagttgtggttgcaacatgtcaa 3137



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>dbj|AK058273.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B11, full
            insert sequence
          Length = 1629

 Score =  293 bits (148), Expect = 3e-76
 Identities = 328/388 (84%)
 Strand = Plus / Minus

                                                                        
Query: 178  gaacttagggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactg 237
            |||| ||||| ||||||||| ||||| || ||||||||||| || | ||||||||| |||
Sbjct: 1183 gaacctagggtagtcattcccacagcactttggtacaagtcttttagccttggcatgctg 1124

                                                                        
Query: 238  atcacgactgtaacaacagaaactccaacaataagaggtaaaactggggctggggtcagt 297
            || || | || ||  || |||||||| ||||||||||| || || |||||||| || | |
Sbjct: 1123 atgaccaatgcaatcacggaaactccgacaataagaggaaatacaggggctggagttaat 1064

                                                                        
Query: 298  tcctgtttgtgatgccgctcttcagttttatatttaagaggaccaacatgaatctgaggt 357
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1063 tcctgtttgtgatgtcgctcttcggttttatatttaagaggaccaacatgaatctgaggt 1004

                                                                        
Query: 358  tgctcttctaggtcaacttcaaccaactccgattcaaatatattggtatgtgatggaagg 417
            ||||  || | |||||||||||| | ||| || |||||| ||| ||||||||||||||| 
Sbjct: 1003 tgcttgtccaagtcaacttcaactatctctgactcaaatctatgggtatgtgatggaaga 944

                                                                        
Query: 418  ccagaccgaagctgaacaaaatgctttccttcgggtaaatttcttacttcaacgtggtag 477
            ||||| ||||||||||||| |||||||||||  || |||||   |||||| | || ||| 
Sbjct: 943  ccagaacgaagctgaacaagatgctttccttttggcaaattctgtacttcgaagtagtac 884

                                                                        
Query: 478  gaaggaggaacaggaaccacagattctattctagaagggtcaacagctgatctaatttca 537
            ||  |||||||||| |  |||||||||||||||||||||||  |||||||||||||||||
Sbjct: 883  gagagaggaacagggagtacagattctattctagaagggtctgcagctgatctaatttca 824

                                        
Query: 538  acagataaatgtggctgcaacatatcaa 565
            ||||| |  ||||| |||||||| ||||
Sbjct: 823  acagacagttgtggttgcaacatgtcaa 796



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>gb|BT018899.1| Zea mays clone EL01T0207E03.d mRNA sequence
          Length = 1585

 Score =  287 bits (145), Expect = 2e-74
 Identities = 373/449 (83%)
 Strand = Plus / Minus

                                                                        
Query: 125  ctctctttctcaatattgtcttccgtggttcctttctgctcggtgtgtttcctgaactta 184
            |||||||||| |||||  |||| ||||| |||||| || ||||||   | |||||||  |
Sbjct: 1389 ctctctttcttaatatattcttgcgtggctcctttttggtcggtgccatccctgaaccca 1330

                                                                        
Query: 185  gggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactgatcacga 244
            | |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| |
Sbjct: 1329 gagaagtcatccctacagcgctctggtataagtcatttaaccttggcatactgatcacca 1270

                                                                        
Query: 245  ctgtaacaacagaaactccaacaataagaggtaaaactggggctggggtcagttcctgtt 304
             || ||| |||||||||||||||||||| || |||||||| ||||||||||||||||| |
Sbjct: 1269 gtgcaaccacagaaactccaacaataagcggaaaaactggtgctggggtcagttcctgct 1210

                                                                        
Query: 305  tgtgatgccgctcttcagttttatatttaagaggaccaacatgaatctgaggttgctctt 364
            | ||||| ||||| |||||||||||||| || ||||||||||| || || || | || ||
Sbjct: 1209 tttgatgacgctcctcagttttatatttgaggggaccaacatggatttggggatcctttt 1150

                                                                        
Query: 365  ctaggtcaacttcaaccaactccgattcaaatatattggtatgtgatggaaggccagacc 424
            | || || ||||| || ||||||||||||||  |||  |||||||||||||||||||| |
Sbjct: 1149 ccagatctacttcgactaactccgattcaaacctatgtgtatgtgatggaaggccagatc 1090

                                                                        
Query: 425  gaagctgaacaaaatgctttccttcgggtaaatttcttacttcaacgtggtaggaaggag 484
            |||||||||||| |||||| || | ||| |||| ||  ||||||| || ||| ||| |||
Sbjct: 1089 gaagctgaacaagatgcttgcccttgggcaaatctcggacttcaaagtagtatgaaagag 1030

                                                                        
Query: 485  gaacaggaaccacagattctattctagaagggtcaacagctgatctaatttcaacagata 544
            ||| |||||  |||| ||||| |||||||| |||    |||||||| ||||||||||| |
Sbjct: 1029 gaagaggaagtacagcttctactctagaagagtctgttgctgatctgatttcaacagaga 970

                                         
Query: 545  aatgtggctgcaacatatcaatgccatct 573
             ||| || || ||| ||||||||||||||
Sbjct: 969  gatgcggatgtaacgtatcaatgccatct 941



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>gb|AY105873.1| Zea mays PCO094136 mRNA sequence
          Length = 809

 Score =  287 bits (145), Expect = 2e-74
 Identities = 373/449 (83%)
 Strand = Plus / Minus

                                                                       
Query: 125 ctctctttctcaatattgtcttccgtggttcctttctgctcggtgtgtttcctgaactta 184
           |||||||||| |||||  |||| ||||| |||||| || ||||||   | |||||||  |
Sbjct: 575 ctctctttcttaatatattcttgcgtggctcctttttggtcggtgccatccctgaaccca 516

                                                                       
Query: 185 gggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactgatcacga 244
           | |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| |
Sbjct: 515 gagaagtcatccctacagcgctctggtataagtcatttaaccttggcatactgatcacca 456

                                                                       
Query: 245 ctgtaacaacagaaactccaacaataagaggtaaaactggggctggggtcagttcctgtt 304
            || ||| |||||||||||||||||||| || |||||||| ||||||||||||||||| |
Sbjct: 455 gtgcaaccacagaaactccaacaataagcggaaaaactggtgctggggtcagttcctgct 396

                                                                       
Query: 305 tgtgatgccgctcttcagttttatatttaagaggaccaacatgaatctgaggttgctctt 364
           | ||||| ||||| |||||||||||||| || ||||||||||| || || || | || ||
Sbjct: 395 tttgatgacgctcctcagttttatatttgaggggaccaacatggatttggggatcctttt 336

                                                                       
Query: 365 ctaggtcaacttcaaccaactccgattcaaatatattggtatgtgatggaaggccagacc 424
           | || || ||||| || ||||||||||||||  |||  |||||||||||||||||||| |
Sbjct: 335 ccagatctacttcgactaactccgattcaaacctatgtgtatgtgatggaaggccagatc 276

                                                                       
Query: 425 gaagctgaacaaaatgctttccttcgggtaaatttcttacttcaacgtggtaggaaggag 484
           |||||||||||| |||||| || | ||| |||| ||  ||||||| || ||| ||| |||
Sbjct: 275 gaagctgaacaagatgcttgcccttgggcaaatctcggacttcaaagtagtatgaaagag 216

                                                                       
Query: 485 gaacaggaaccacagattctattctagaagggtcaacagctgatctaatttcaacagata 544
           ||| |||||  |||| ||||| |||||||| |||    |||||||| ||||||||||| |
Sbjct: 215 gaagaggaagtacagcttctactctagaagagtctgttgctgatctgatttcaacagaga 156

                                        
Query: 545 aatgtggctgcaacatatcaatgccatct 573
            ||| || || ||| ||||||||||||||
Sbjct: 155 gatgcggatgtaacgtatcaatgccatct 127



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  236 bits (119), Expect = 7e-59
 Identities = 230/267 (86%)
 Strand = Plus / Plus

                                                                            
Query: 299      cctgtttgtgatgccgctcttcagttttatatttaagaggaccaacatgaatctgaggtt 358
                ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 11024477 cctgtttgtgatgtcgctcttcggttttatatttaagaggaccaacatgaatctgaggtt 11024536

                                                                            
Query: 359      gctcttctaggtcaacttcaaccaactccgattcaaatatattggtatgtgatggaaggc 418
                |||  || | |||||||||||| | ||| || |||||| ||| ||||||||||||||| |
Sbjct: 11024537 gcttgtccaagtcaacttcaactatctctgactcaaatctatgggtatgtgatggaagac 11024596

                                                                            
Query: 419      cagaccgaagctgaacaaaatgctttccttcgggtaaatttcttacttcaacgtggtagg 478
                |||| ||||||||||||| |||||||||||  || |||||   |||||| | || ||| |
Sbjct: 11024597 cagaacgaagctgaacaagatgctttccttttggcaaattctgtacttcgaagtagtacg 11024656

                                                                            
Query: 479      aaggaggaacaggaaccacagattctattctagaagggtcaacagctgatctaatttcaa 538
                |  |||||||||| |  |||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 11024657 agagaggaacagggagtacagattctattctagaagggtctgcagctgatctaatttcaa 11024716

                                           
Query: 539      cagataaatgtggctgcaacatatcaa 565
                |||| |  ||||| |||||||| ||||
Sbjct: 11024717 cagacagttgtggttgcaacatgtcaa 11024743



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 178      gaacttagggaagtcattcctacagcgctctggtacaagtc 218
                |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 11023970 gaacctagggtagtcattcccacagcactttggtacaagtc 11024010



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                            
Query: 223      aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 282
                ||||||||||| ||||| || | || ||  || |||||||| ||||||||||| || || 
Sbjct: 11024109 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 11024168

                        
Query: 283      ggggctgg 290
                ||||||||
Sbjct: 11024169 ggggctgg 11024176



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>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0682B08
          Length = 138376

 Score =  236 bits (119), Expect = 7e-59
 Identities = 230/267 (86%)
 Strand = Plus / Plus

                                                                         
Query: 299   cctgtttgtgatgccgctcttcagttttatatttaagaggaccaacatgaatctgaggtt 358
             ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 53359 cctgtttgtgatgtcgctcttcggttttatatttaagaggaccaacatgaatctgaggtt 53418

                                                                         
Query: 359   gctcttctaggtcaacttcaaccaactccgattcaaatatattggtatgtgatggaaggc 418
             |||  || | |||||||||||| | ||| || |||||| ||| ||||||||||||||| |
Sbjct: 53419 gcttgtccaagtcaacttcaactatctctgactcaaatctatgggtatgtgatggaagac 53478

                                                                         
Query: 419   cagaccgaagctgaacaaaatgctttccttcgggtaaatttcttacttcaacgtggtagg 478
             |||| ||||||||||||| |||||||||||  || |||||   |||||| | || ||| |
Sbjct: 53479 cagaacgaagctgaacaagatgctttccttttggcaaattctgtacttcgaagtagtacg 53538

                                                                         
Query: 479   aaggaggaacaggaaccacagattctattctagaagggtcaacagctgatctaatttcaa 538
             |  |||||||||| |  |||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 53539 agagaggaacagggagtacagattctattctagaagggtctgcagctgatctaatttcaa 53598

                                        
Query: 539   cagataaatgtggctgcaacatatcaa 565
             |||| |  ||||| |||||||| ||||
Sbjct: 53599 cagacagttgtggttgcaacatgtcaa 53625



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 178   gaacttagggaagtcattcctacagcgctctggtacaagtc 218
             |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 52852 gaacctagggtagtcattcccacagcactttggtacaagtc 52892



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                         
Query: 223   aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 282
             ||||||||||| ||||| || | || ||  || |||||||| ||||||||||| || || 
Sbjct: 52991 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 53050

                     
Query: 283   ggggctgg 290
             ||||||||
Sbjct: 53051 ggggctgg 53058



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>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487H02
          Length = 145491

 Score =  236 bits (119), Expect = 7e-59
 Identities = 230/267 (86%)
 Strand = Plus / Plus

                                                                          
Query: 299    cctgtttgtgatgccgctcttcagttttatatttaagaggaccaacatgaatctgaggtt 358
              ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 127319 cctgtttgtgatgtcgctcttcggttttatatttaagaggaccaacatgaatctgaggtt 127378

                                                                          
Query: 359    gctcttctaggtcaacttcaaccaactccgattcaaatatattggtatgtgatggaaggc 418
              |||  || | |||||||||||| | ||| || |||||| ||| ||||||||||||||| |
Sbjct: 127379 gcttgtccaagtcaacttcaactatctctgactcaaatctatgggtatgtgatggaagac 127438

                                                                          
Query: 419    cagaccgaagctgaacaaaatgctttccttcgggtaaatttcttacttcaacgtggtagg 478
              |||| ||||||||||||| |||||||||||  || |||||   |||||| | || ||| |
Sbjct: 127439 cagaacgaagctgaacaagatgctttccttttggcaaattctgtacttcgaagtagtacg 127498

                                                                          
Query: 479    aaggaggaacaggaaccacagattctattctagaagggtcaacagctgatctaatttcaa 538
              |  |||||||||| |  |||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 127499 agagaggaacagggagtacagattctattctagaagggtctgcagctgatctaatttcaa 127558

                                         
Query: 539    cagataaatgtggctgcaacatatcaa 565
              |||| |  ||||| |||||||| ||||
Sbjct: 127559 cagacagttgtggttgcaacatgtcaa 127585



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 178    gaacttagggaagtcattcctacagcgctctggtacaagtc 218
              |||| ||||| ||||||||| ||||| || |||||||||||
Sbjct: 126812 gaacctagggtagtcattcccacagcactttggtacaagtc 126852



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                          
Query: 223    aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 282
              ||||||||||| ||||| || | || ||  || |||||||| ||||||||||| || || 
Sbjct: 126951 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 127010

                      
Query: 283    ggggctgg 290
              ||||||||
Sbjct: 127011 ggggctgg 127018



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>gb|U92838.1|MMSALH06 Mus musculus sialoadhesin gene, exons 8, 9, and 10
          Length = 1772

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 160 ctgctcggtgtgtttcctgaa 180
           |||||||||||||||||||||
Sbjct: 22  ctgctcggtgtgtttcctgaa 42



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>gb|AC121959.3| Mus musculus BAC clone RP24-247N18 from chromosome 3, complete sequence
          Length = 187416

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 248    taacaacagaaactccaacaa 268
              |||||||||||||||||||||
Sbjct: 153736 taacaacagaaactccaacaa 153756



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>emb|AL035409.15|HS564M11 Human DNA sequence from clone RP4-564M11 on chromosome 1p31.1 Contains
             the 3' end of the SIAT7E gene for sialyltransferase 7
             ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,
             3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase)
             E, a novel gene and 3' end of the PIGK gene for
             phosphatidylinositol glycan class K, complete sequence
          Length = 138783

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 546   atgtggctgcaacatatcaat 566
             |||||||||||||||||||||
Sbjct: 79068 atgtggctgcaacatatcaat 79088



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>gb|AC096725.3| Homo sapiens BAC clone RP11-25L5 from 4, complete sequence
          Length = 182627

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 448    tcgggtaaatttcttacttca 468
              |||||||||||||||||||||
Sbjct: 148052 tcgggtaaatttcttacttca 148072



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>gb|AC164560.3| Mus musculus BAC clone RP23-192D6 from chromosome 3, complete sequence
          Length = 200505

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 248    taacaacagaaactccaacaa 268
              |||||||||||||||||||||
Sbjct: 170731 taacaacagaaactccaacaa 170711



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>emb|AL831736.15| Mouse DNA sequence from clone RP23-32L15 on chromosome 2, complete
             sequence
          Length = 126358

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 160   ctgctcggtgtgtttcctgaa 180
             |||||||||||||||||||||
Sbjct: 11160 ctgctcggtgtgtttcctgaa 11140



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>ref|XM_642090.1| Dictyostelium discoideum SNF2-related domain-containing protein
            (DDB0220518), partial mRNA
          Length = 9210

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 244  actgtaacaacagaaactccaaca 267
            ||||||||||||| ||||||||||
Sbjct: 8839 actgtaacaacagtaactccaaca 8862



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>gb|AC125444.9| Mus musculus chromosome 1, clone RP24-499L20, complete sequence
          Length = 162238

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   ctttctcaatattgtcttcc 148
             ||||||||||||||||||||
Sbjct: 12002 ctttctcaatattgtcttcc 11983



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>gb|AC138214.8| Mus musculus chromosome 1, clone RP23-404A6, complete sequence
          Length = 203478

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    ctttctcaatattgtcttcc 148
              ||||||||||||||||||||
Sbjct: 195772 ctttctcaatattgtcttcc 195753



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>gb|AC137123.7| Mus musculus chromosome 15, clone RP23-401L15, complete sequence
          Length = 232054

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 350   tctgaggttgctcttctaggtcaa 373
             |||| |||||||||||||||||||
Sbjct: 75421 tctgtggttgctcttctaggtcaa 75398



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>gb|AC157983.16| Medicago truncatula clone mth2-130n5, complete sequence
          Length = 114996

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 327   atatttaagaggaccaacatgaat 350
             ||||||||||||||||| ||||||
Sbjct: 34798 atatttaagaggaccaaaatgaat 34821



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>emb|AL158091.31| Human DNA sequence from clone RP5-824A14 on chromosome 20 Contains the
             5' end of the BTBD4 gene for BTB (POZ) domain containing
             4, part of a gene for a tissue plasminogen activator
             protein and two CpG islands, complete sequence
          Length = 41932

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   cctttctgctcggtgtgttt 174
             ||||||||||||||||||||
Sbjct: 12460 cctttctgctcggtgtgttt 12441



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>emb|BX890581.13| Zebrafish DNA sequence from clone CH211-222O19 in linkage group 21,
             complete sequence
          Length = 205143

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   gtgatgccgctcttcagttt 325
             ||||||||||||||||||||
Sbjct: 50891 gtgatgccgctcttcagttt 50910



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>emb|AJ606381.1| Staphylococcus aureus partial spa gene for protein A, strain M3
          Length = 936

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 425 gaagctgaacaaaatgcttt 444
           ||||||||||||||||||||
Sbjct: 13  gaagctgaacaaaatgcttt 32



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>emb|CR354427.7| Zebrafish DNA sequence from clone DKEY-263N17 in linkage group 18,
              complete sequence
          Length = 164758

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    tgtttcaggctctctttctc 135
              ||||||||||||||||||||
Sbjct: 128434 tgtttcaggctctctttctc 128415



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>gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, complete sequence
          Length = 68440

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   tatgtttcaggctctctttc 133
             ||||||||||||||||||||
Sbjct: 64829 tatgtttcaggctctctttc 64810



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>ref|XM_684436.1| PREDICTED: Danio rerio similar to apoptosis-inducing factor like
           isoform 1 (LOC561033), partial mRNA
          Length = 1355

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 306 gtgatgccgctcttcagttt 325
           ||||||||||||||||||||
Sbjct: 848 gtgatgccgctcttcagttt 829



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>ref|XM_680044.1| PREDICTED: Danio rerio similar to apoptosis-inducing factor like
           isoform 2 (LOC557064), mRNA
          Length = 1822

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 306 gtgatgccgctcttcagttt 325
           ||||||||||||||||||||
Sbjct: 917 gtgatgccgctcttcagttt 898



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>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence
          Length = 190469

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 292    gtcagttcctgtttgtgatg 311
              ||||||||||||||||||||
Sbjct: 106996 gtcagttcctgtttgtgatg 106977



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>gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, complete sequence
          Length = 198167

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 114  tatgtttcaggctctctttc 133
            ||||||||||||||||||||
Sbjct: 2684 tatgtttcaggctctctttc 2665



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>emb|AL929193.19| Zebrafish DNA sequence from clone CH211-274P24 in linkage group 20,
              complete sequence
          Length = 159094

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    gtgatgccgctcttcagttt 325
              ||||||||||||||||||||
Sbjct: 136435 gtgatgccgctcttcagttt 136416



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>emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in linkage group 18,
             complete sequence
          Length = 145250

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   tgtttcaggctctctttctc 135
             ||||||||||||||||||||
Sbjct: 91226 tgtttcaggctctctttctc 91207



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>gb|AC005245.1|AC005245 Homo sapiens chromosome 17, clone hRPK.642_C_21, complete sequence
          Length = 172084

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   cagttttatatttaagagga 339
             ||||||||||||||||||||
Sbjct: 26662 cagttttatatttaagagga 26643


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,977,000
Number of Sequences: 3902068
Number of extensions: 5977000
Number of successful extensions: 103837
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103725
Number of HSP's gapped (non-prelim): 103
length of query: 573
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 550
effective length of database: 17,143,297,704
effective search space: 9428813737200
effective search space used: 9428813737200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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