ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PE2R4_HUMAN (P35408) Prostaglandin E2 receptor, EP4 subtype (Pro... 28 4.6
2PE2R4_PANTR (Q95KZ0) Prostaglandin E2 receptor, EP4 subtype (Pro... 28 6.0
3PE2R4_RABIT (Q28691) Prostaglandin E2 receptor, EP4 subtype (Pro... 28 7.8
4IDLC_STRPU (Q26630) 33 kDa inner dynein arm light chain, axonema... 28 7.8

>PE2R4_HUMAN (P35408) Prostaglandin E2 receptor, EP4 subtype (Prostanoid EP4|
           receptor) (PGE receptor, EP4 subtype)
          Length = 488

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 168 SAC*LAMRSHPSAASFLEGLSPFRRRK-FEAITG 70
           +A  +A R HP+A+  L  LS FRRR+ F  I G
Sbjct: 232 AAASVASRGHPAASPALPRLSDFRRRRSFRRIAG 265



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>PE2R4_PANTR (Q95KZ0) Prostaglandin E2 receptor, EP4 subtype (Prostanoid EP4|
           receptor) (PGE receptor, EP4 subtype)
          Length = 490

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 156 LAMRSHPSAASFLEGLSPFRRRK-FEAITG 70
           +A R HP+A+  L  LS FRRR+ F  I G
Sbjct: 238 VASRGHPAASPALPRLSDFRRRRSFRRIAG 267



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>PE2R4_RABIT (Q28691) Prostaglandin E2 receptor, EP4 subtype (Prostanoid EP4|
           receptor) (PGE receptor, subtype EP4)
          Length = 488

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 153 AMRSHPSAASFLEGLSPFRRRK-FEAITG 70
           A R HP+A+  L  LS FRRR+ F  I G
Sbjct: 240 ACRGHPTASPALPRLSDFRRRRSFRRIAG 268



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>IDLC_STRPU (Q26630) 33 kDa inner dynein arm light chain, axonemal (p33)|
          Length = 260

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
 Frame = +3

Query: 207 PPTKNGHAPPPIESRKSSQ------SVNPCYVWT 290
           PP K G   PP+ES+K+ Q      S+ P   WT
Sbjct: 47  PPPKGGSKLPPVESQKAQQTDEILNSILPPREWT 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,660,402
Number of Sequences: 219361
Number of extensions: 671333
Number of successful extensions: 1367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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