ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26f06 |
|---|---|
| Clone Library Name | barley_pub |
>IM30_ARATH (O80796) Probable membrane-associated 30 kDa protein, chloroplast| precursor Length = 330 Score = 55.1 bits (131), Expect = 4e-08 Identities = 24/40 (60%), Positives = 31/40 (77%) Frame = -1 Query: 346 SLKGELPPGRTTTASKSGSPFRDXEIETELNELRKKXKEY 227 S KGELPPGR+T A+ + PF+D EIE ELNELR+K ++ Sbjct: 291 SKKGELPPGRSTVAASTRYPFKDSEIENELNELRRKANDF 330
>IM30_ORYSA (Q8S0J7) Probable membrane-associated 30 kDa protein, chloroplast| precursor Length = 317 Score = 55.1 bits (131), Expect = 4e-08 Identities = 27/41 (65%), Positives = 30/41 (73%), Gaps = 1/41 (2%) Frame = -1 Query: 346 SLKGELPPGRTTTASKSGS-PFRDXEIETELNELRKKXKEY 227 S KGELPPGRT ++ + PFRD EIE ELNELRKK EY Sbjct: 277 SSKGELPPGRTAVSNSGAARPFRDIEIENELNELRKKANEY 317
>IM30_PEA (Q03943) Membrane-associated 30 kDa protein, chloroplast precursor| (M30) Length = 323 Score = 54.3 bits (129), Expect = 7e-08 Identities = 26/43 (60%), Positives = 34/43 (79%), Gaps = 4/43 (9%) Frame = -1 Query: 346 SLKGELPPGRT----TTASKSGSPFRDXEIETELNELRKKXKE 230 S KGELPPGR+ TT++K+G+PFRD +IE EL +LRK+ KE Sbjct: 280 SKKGELPPGRSSTTSTTSTKTGNPFRDADIEIELEQLRKRSKE 322
>Y4479_BORBR (Q7WF01) UPF0271 protein BB4479| Length = 252 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = -2 Query: 192 GLMEPPSRRTPE--VIALQISAMCIRGSEPPSALFW*RYMGARRVLLAI 52 G++ S RTP+ +ALQ +CI G +P + +F AR + LA+ Sbjct: 200 GMVRDGSVRTPDGQTVALQADTLCIHGDQPDALVF------ARGIRLAL 242
>Y4006_BORPA (Q7W3M5) UPF0271 protein BPP4006| Length = 252 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = -2 Query: 192 GLMEPPSRRTPE--VIALQISAMCIRGSEPPSALFW*RYMGARRVLLAI 52 G++ S RTP+ +ALQ +CI G +P + +F AR + LA+ Sbjct: 200 GMVRDGSVRTPDGQTVALQADTLCIHGDQPDALVF------ARGIRLAL 242
>Y150_BORPE (O30444) UPF0271 protein BP0150| Length = 252 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = -2 Query: 192 GLMEPPSRRTPE--VIALQISAMCIRGSEPPSALFW*RYMGARRVLLAI 52 G++ S RTP+ +ALQ +CI G +P + +F AR + LA+ Sbjct: 200 GMVRDGSVRTPDGQTVALQADTLCIHGDQPDALVF------ARGIRLAL 242
>GP116_RAT (Q9WVT0) Probable G-protein coupled receptor 116 precursor| (G-protein coupled hepta-helical receptor Ig-hepta) Length = 1349 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/70 (24%), Positives = 35/70 (50%) Frame = -2 Query: 318 EQPQPANXAALSGTQRLRRS*MSCERRXKSIRFYLQDMSVSPGLMEPPSRRTPEVIALQI 139 E+ + A ++G +L ++ + + + + YL+D+SVS G E R +P + I Sbjct: 715 EETRACISAPINGLLQLAKALIKSPSQDQKLPKYLRDLSVSTGKEEQDIRSSPGSLGAII 774 Query: 138 SAMCIRGSEP 109 S + + + P Sbjct: 775 SILDLLSTVP 784
>CUL2_PONPY (Q5RCF3) Cullin-2 (CUL-2)| Length = 745 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 5/34 (14%) Frame = +3 Query: 18 NCTKYNVXCTGKLREE-----LYAHPYTFTKKVH 104 NC++Y G+L++E Y HP ++TK +H Sbjct: 231 NCSQYMEKVLGRLKDEEIRCRKYLHPSSYTKVIH 264
>CUL2_MOUSE (Q9D4H8) Cullin-2 (CUL-2)| Length = 745 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 5/34 (14%) Frame = +3 Query: 18 NCTKYNVXCTGKLREE-----LYAHPYTFTKKVH 104 NC++Y G+L++E Y HP ++TK +H Sbjct: 231 NCSQYMEKVLGRLKDEEIRCRKYLHPSSYTKVIH 264
>CUL2_HUMAN (Q13617) Cullin-2 (CUL-2)| Length = 745 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 5/34 (14%) Frame = +3 Query: 18 NCTKYNVXCTGKLREE-----LYAHPYTFTKKVH 104 NC++Y G+L++E Y HP ++TK +H Sbjct: 231 NCSQYMEKVLGRLKDEEIRCRKYLHPSSYTKVIH 264
>GCP_STRCO (O86793) Probable O-sialoglycoprotein endopeptidase (EC 3.4.24.57)| (Glycoprotease) Length = 374 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +1 Query: 40 IAQENCEKNSTRTHIPLPKKCT 105 +AQE CE R +P PK CT Sbjct: 289 LAQERCEAAGIRLRVPRPKLCT 310
>HAM1_PROMP (Q7V316) HAM1 protein homolog| Length = 191 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = -1 Query: 301 KSGSPFRDXEIETELNELRKKXKEY*ILFTGHVCVARLDGTS*PKNPGSYS 149 ++G FR+ I+ + +E+ KK + Y I +C+ LDG PG YS Sbjct: 39 ENGITFRENAIK-KASEVSKKTRNYAIADDSGICIDALDG-----RPGIYS 83
>GPC6A_HUMAN (Q5T6X5) G-protein coupled receptor family C group 6 member A| precursor (hGPRC6A) (G-protein coupled receptor 33) (hGPCR33) Length = 926 Score = 27.3 bits (59), Expect = 9.6 Identities = 21/76 (27%), Positives = 32/76 (42%) Frame = +1 Query: 34 MXIAQENCEKNSTRTHIPLPKKCTGGFRTSDAHC*NLQGYNFRGSSARRFHQAWRHRHVL 213 M IA +N + T IP KK + G+ FR + FH ++ H+L Sbjct: 298 MWIASDNWSTATKITTIPNVKKIG-----------KVVGFAFRRGNISSFHSFLQNLHLL 346 Query: 214 *IKSNTLXSSFAAHLA 261 S+ L +A HL+ Sbjct: 347 PSDSHKLLHEYAMHLS 362
>MPS1_BRARE (Q8AYG3) Mitotic checkpoint serine/threonine-protein kinase Mps1| (EC 2.7.12.2) (Monopolar spindle 1) (Nightcap protein) Length = 983 Score = 27.3 bits (59), Expect = 9.6 Identities = 19/59 (32%), Positives = 25/59 (42%) Frame = -2 Query: 339 KASFLRVEQPQPANXAALSGTQRLRRS*MSCERRXKSIRFYLQDMSVSPGLMEPPSRRT 163 K L E + + +AL TQ RRS +CE + S + D SP P RT Sbjct: 174 KRQLLSHEDKENLSVSALDHTQGSRRSDGTCELKPSSTFLHSSDQKFSPQEENGPVWRT 232
>RPOB_DESPS (Q6AP78) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1360 Score = 27.3 bits (59), Expect = 9.6 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = +2 Query: 158 SGVLRLGGSIKPGDT 202 SG++R+G IKPGDT Sbjct: 870 SGIVRVGAEIKPGDT 884 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,056,907 Number of Sequences: 219361 Number of extensions: 896972 Number of successful extensions: 2185 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2145 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2183 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
