ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190082.1| Oryza sativa (japonica cultivar-group), predic... 123 6e-25
2dbj|AK099501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 6e-25
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
4dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
5dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
6gb|AY021985.1| Oryza sativa microsatellite MRG4310 containing (T... 84 5e-13
7gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome... 70 7e-09
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
9dbj|AK073796.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
10dbj|AK073553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
11gb|AY107712.1| Zea mays PCO079656 mRNA sequence 68 3e-08
12gb|AC122543.1| Genomic sequence for Brassica oleracea, clone B21... 66 1e-07
13gb|AY104506.1| Zea mays PCO080326 mRNA sequence 58 3e-05
14ref|NM_116545.2| Arabidopsis thaliana RNA binding / nucleic acid... 56 1e-04
15gb|AY084669.1| Arabidopsis thaliana clone 114653 mRNA, complete ... 56 1e-04
16gb|AC101559.20| Mus musculus chromosome 5, clone RP23-194K16, co... 42 1.7
17ref|XM_817392.1| Trypanosoma brucei TREU927 hypothetical protein... 42 1.7
18gb|AC163694.2| Mus musculus BAC clone RP24-80O2 from chromosome ... 42 1.7
19emb|BX936416.11| Zebrafish DNA sequence from clone CH211-194I16 ... 42 1.7
20emb|CT030641.11| Mouse DNA sequence from clone RP23-32M15 on chr... 42 1.7
21ref|NM_124994.3| Arabidopsis thaliana unknown protein AT5G56120 ... 40 6.7
22ref|NM_119810.1| Arabidopsis thaliana S-adenosylmethionine-depen... 40 6.7
23ref|XM_639566.1| Dictyostelium discoideum hypothetical protein (... 40 6.7
24ref|XM_639501.1| Dictyostelium discoideum hypothetical protein (... 40 6.7
25gb|AC018631.3| Drosophila melanogaster clone BACR03I06, complete... 40 6.7
26gb|AC148970.3| Medicago truncatula chromosome 2 BAC clone mth2-7... 40 6.7
27gb|BT014888.1| Arabidopsis thaliana unknown protein (At4g36470) ... 40 6.7
28gb|BT011992.1| Arabidopsis thaliana At4g36470 mRNA sequence 40 6.7
29gb|BT010876.1| Arabidopsis thaliana At5g56120 gene, complete cds 40 6.7
30gb|AC139183.4| Mus musculus BAC clone RP24-114C21 from chromosom... 40 6.7
31gb|AC159889.2| Mus musculus BAC clone RP24-81G6 from chromosome ... 40 6.7
32emb|AL591214.8| Human DNA sequence from clone RP11-18I23 on chro... 40 6.7
33emb|AL356111.13| Human DNA sequence from clone RP11-501G6 on chr... 40 6.7
34emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 6.7
35ref|XM_775954.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.7
36emb|AL929356.1|PFA929356 Plasmodium falciparum strain 3D7, chrom... 40 6.7
37emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, ... 40 6.7
38emb|BX005003.10| Zebrafish DNA sequence from clone DKEY-241F8 in... 40 6.7
39gb|AC104165.2| Homo sapiens chromosome 3 clone RP11-681O4, compl... 40 6.7
40gb|AC114688.3| Homo sapiens chromosome 18, clone RP11-316J22, co... 40 6.7
41gb|AY191018.1| Dictyostelium discoideum autophagy protein 4 (apg... 40 6.7
42gb|AC016098.8| Homo sapiens, clone RP11-25P13, complete sequence 40 6.7
43ref|XM_696884.1| PREDICTED: Danio rerio hypothetical protein LOC... 40 6.7
44emb|AL844143.17| Mouse DNA sequence from clone RP23-370D19 on ch... 40 6.7
45gb|AC151523.4| Medicago truncatula chromosome 7 BAC clone mth2-1... 40 6.7
46gb|AC158774.6| Mus musculus chromosome 18, clone RP23-427N16, co... 40 6.7
47gb|AC020559.4|AC020559 Homo sapiens BAC clone RP11-527F13 from 6... 40 6.7
48gb|AC124787.6| Mus musculus chromosome 18, clone RP24-395J18, co... 40 6.7
49gb|AC116330.2| Dictyostelium discoideum chromosome 2 map 3191214... 40 6.7
50dbj|AK176891.1| Arabidopsis thaliana mRNA for putative protein, ... 40 6.7
51dbj|AB011476.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.7
52gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 ... 40 6.7
53dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.7
54gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.7 
>ref|NM_190082.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1383

 Score =  123 bits (62), Expect = 6e-25
 Identities = 120/143 (83%)
 Strand = Plus / Minus

                                                                        
Query: 346  tagnttacaaaaccgaagcatttgctggaaccagttgctttgtcaacaaacaccttggna 405
            ||| |||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | |
Sbjct: 1265 tagcttacaaaaccaaagcatttgctggaacccgttgctttgtctacaaaaaccttagca 1206

                                                                        
Query: 406  cttattactctaccaaacctntggaaggcatnnnanagttcttgntcaccaaattcttgt 465
            |||| ||||||||| ||||| ||||| ||||   | || ||||| || ||| | ||||||
Sbjct: 1205 cttagtactctaccgaacctctggaatgcattggaaaggtcttggtccccataatcttgt 1146

                                   
Query: 466  ggnatatgatanataaatanatt 488
            || |||||||| ||||||| |||
Sbjct: 1145 gggatatgatagataaatagatt 1123



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 74/86 (86%), Gaps = 3/86 (3%)
 Strand = Plus / Minus

                                                                        
Query: 225  tcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttctt 284
            |||||| |||||||||||||||  |||||   ||||||||||||||||||||||||| ||
Sbjct: 1383 tcaaaagggtttactgtgcttggagttgt---ctctcttgagttgtactttgagtttttt 1327

                                      
Query: 285  gccacctatctggaaaccgttcatca 310
             |  ||||  ||||||||||||||||
Sbjct: 1326 actgcctaattggaaaccgttcatca 1301
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>dbj|AK099501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028I07, full
            insert sequence
          Length = 1837

 Score =  123 bits (62), Expect = 6e-25
 Identities = 120/143 (83%)
 Strand = Plus / Minus

                                                                        
Query: 346  tagnttacaaaaccgaagcatttgctggaaccagttgctttgtcaacaaacaccttggna 405
            ||| |||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | |
Sbjct: 1441 tagcttacaaaaccaaagcatttgctggaacccgttgctttgtctacaaaaaccttagca 1382

                                                                        
Query: 406  cttattactctaccaaacctntggaaggcatnnnanagttcttgntcaccaaattcttgt 465
            |||| ||||||||| ||||| ||||| ||||   | || ||||| || ||| | ||||||
Sbjct: 1381 cttagtactctaccgaacctctggaatgcattggaaaggtcttggtccccataatcttgt 1322

                                   
Query: 466  ggnatatgatanataaatanatt 488
            || |||||||| ||||||| |||
Sbjct: 1321 gggatatgatagataaatagatt 1299



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 121/148 (81%), Gaps = 8/148 (5%)
 Strand = Plus / Minus

                                                                        
Query: 163  tcaactatctgacaaatatgtaccgggaacaagaccgcattgtcatcacagatgattntt 222
            |||| ||||||||||||||||||| |||||  || ||| | ||||||| ||     | ||
Sbjct: 1616 tcaattatctgacaaatatgtaccaggaacctgatcgcgtggtcatcatag-----tttt 1562

                                                                        
Query: 223  tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 282
             ||||||| |||||||||||||||  |||||   ||||||||||||||||||||||||| 
Sbjct: 1561 cgtcaaaagggtttactgtgcttggagttgt---ctctcttgagttgtactttgagtttt 1505

                                        
Query: 283  ttgccacctatctggaaaccgttcatca 310
            || |  ||||  ||||||||||||||||
Sbjct: 1504 ttactgcctaattggaaaccgttcatca 1477
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  107 bits (54), Expect = 3e-20
 Identities = 107/128 (83%)
 Strand = Plus / Minus

                                                                            
Query: 361      aagcatttgctggaaccagttgctttgtcaacaaacaccttggnacttattactctacca 420
                ||||||||||||||||| ||||||||||| ||||| ||||| | ||||| ||||||||| 
Sbjct: 41190748 aagcatttgctggaacccgttgctttgtctacaaaaaccttagcacttagtactctaccg 41190689

                                                                            
Query: 421      aacctntggaaggcatnnnanagttcttgntcaccaaattcttgtggnatatgatanata 480
                ||||| ||||| ||||   | || ||||| || ||| | |||||||| |||||||| |||
Sbjct: 41190688 aacctctggaatgcattggaaaggtcttggtccccataatcttgtgggatatgatagata 41190629

                        
Query: 481      aatanatt 488
                |||| |||
Sbjct: 41190628 aatagatt 41190621



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 121/148 (81%), Gaps = 8/148 (5%)
 Strand = Plus / Minus

                                                                            
Query: 163      tcaactatctgacaaatatgtaccgggaacaagaccgcattgtcatcacagatgattntt 222
                |||| ||||||||||||||||||| |||||  || ||| | ||||||| ||     | ||
Sbjct: 41191041 tcaattatctgacaaatatgtaccaggaacctgatcgcgtggtcatcatag-----tttt 41190987

                                                                            
Query: 223      tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 282
                 ||||||| |||||||||||||||  |||||   ||||||||||||||||||||||||| 
Sbjct: 41190986 cgtcaaaagggtttactgtgcttggagttgt---ctctcttgagttgtactttgagtttt 41190930

                                            
Query: 283      ttgccacctatctggaaaccgttcatca 310
                || |  ||||  ||||||||||||||||
Sbjct: 41190929 ttactgcctaattggaaaccgttcatca 41190902
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>dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1150F11
          Length = 130355

 Score =  107 bits (54), Expect = 3e-20
 Identities = 107/128 (83%)
 Strand = Plus / Minus

                                                                        
Query: 361  aagcatttgctggaaccagttgctttgtcaacaaacaccttggnacttattactctacca 420
            ||||||||||||||||| ||||||||||| ||||| ||||| | ||||| ||||||||| 
Sbjct: 7663 aagcatttgctggaacccgttgctttgtctacaaaaaccttagcacttagtactctaccg 7604

                                                                        
Query: 421  aacctntggaaggcatnnnanagttcttgntcaccaaattcttgtggnatatgatanata 480
            ||||| ||||| ||||   | || ||||| || ||| | |||||||| |||||||| |||
Sbjct: 7603 aacctctggaatgcattggaaaggtcttggtccccataatcttgtgggatatgatagata 7544

                    
Query: 481  aatanatt 488
            |||| |||
Sbjct: 7543 aatagatt 7536



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 121/148 (81%), Gaps = 8/148 (5%)
 Strand = Plus / Minus

                                                                        
Query: 163  tcaactatctgacaaatatgtaccgggaacaagaccgcattgtcatcacagatgattntt 222
            |||| ||||||||||||||||||| |||||  || ||| | ||||||| ||     | ||
Sbjct: 7956 tcaattatctgacaaatatgtaccaggaacctgatcgcgtggtcatcatag-----tttt 7902

                                                                        
Query: 223  tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 282
             ||||||| |||||||||||||||  |||||   ||||||||||||||||||||||||| 
Sbjct: 7901 cgtcaaaagggtttactgtgcttggagttgt---ctctcttgagttgtactttgagtttt 7845

                                        
Query: 283  ttgccacctatctggaaaccgttcatca 310
            || |  ||||  ||||||||||||||||
Sbjct: 7844 ttactgcctaattggaaaccgttcatca 7817
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>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504E02
          Length = 137468

 Score =  107 bits (54), Expect = 3e-20
 Identities = 107/128 (83%)
 Strand = Plus / Minus

                                                                         
Query: 361   aagcatttgctggaaccagttgctttgtcaacaaacaccttggnacttattactctacca 420
             ||||||||||||||||| ||||||||||| ||||| ||||| | ||||| ||||||||| 
Sbjct: 87803 aagcatttgctggaacccgttgctttgtctacaaaaaccttagcacttagtactctaccg 87744

                                                                         
Query: 421   aacctntggaaggcatnnnanagttcttgntcaccaaattcttgtggnatatgatanata 480
             ||||| ||||| ||||   | || ||||| || ||| | |||||||| |||||||| |||
Sbjct: 87743 aacctctggaatgcattggaaaggtcttggtccccataatcttgtgggatatgatagata 87684

                     
Query: 481   aatanatt 488
             |||| |||
Sbjct: 87683 aatagatt 87676



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 121/148 (81%), Gaps = 8/148 (5%)
 Strand = Plus / Minus

                                                                         
Query: 163   tcaactatctgacaaatatgtaccgggaacaagaccgcattgtcatcacagatgattntt 222
             |||| ||||||||||||||||||| |||||  || ||| | ||||||| ||     | ||
Sbjct: 88096 tcaattatctgacaaatatgtaccaggaacctgatcgcgtggtcatcatag-----tttt 88042

                                                                         
Query: 223   tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 282
              ||||||| |||||||||||||||  |||||   ||||||||||||||||||||||||| 
Sbjct: 88041 cgtcaaaagggtttactgtgcttggagttgt---ctctcttgagttgtactttgagtttt 87985

                                         
Query: 283   ttgccacctatctggaaaccgttcatca 310
             || |  ||||  ||||||||||||||||
Sbjct: 87984 ttactgcctaattggaaaccgttcatca 87957
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>gb|AY021985.1| Oryza sativa microsatellite MRG4310 containing (TC)X12, closest to
           marker R1014A, genomic sequence
          Length = 224

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                       
Query: 361 aagcatttgctggaaccagttgctttgtcaacaaacaccttggnacttattactctacca 420
           ||||||||||||||||| ||||||||||| ||||| ||||| | ||||| ||||||||| 
Sbjct: 94  aagcatttgctggaacccgttgctttgtctacaaaaaccttagcacttagtactctaccg 35

                           
Query: 421 aacctntggaaggcat 436
           ||||| ||||| ||||
Sbjct: 34  aacctctggaatgcat 19
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>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09,
              complete sequence
          Length = 167318

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 76/89 (85%), Gaps = 3/89 (3%)
 Strand = Plus / Minus

                                                                          
Query: 223    tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 282
              |||||| ||| ||||||||||||| ||||||   ||||||||||||||||||| ||||| 
Sbjct: 116461 tgtcaataagttttactgtgcttgctgttgt---ctctcttgagttgtactttcagtttt 116405

                                           
Query: 283    ttgccacctatctggaaaccgttcatcat 311
              || |||||||  ||| | |||||||||||
Sbjct: 116404 ttaccacctaattggtatccgttcatcat 116376



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                          
Query: 357    accgaagcatttgctggaaccagttgctttgtcaacaaacaccttggnacttattactct 416
              |||||||||||| ||   ||||||||||||||| ||||| || || | ||| | ||||||
Sbjct: 116255 accgaagcatttactaagaccagttgctttgtctacaaaaactttagcactcagtactct 116196

                    
Query: 417    accaaa 422
              ||||||
Sbjct: 116195 accaaa 116190
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 76/89 (85%), Gaps = 3/89 (3%)
 Strand = Plus / Minus

                                                                            
Query: 223      tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 282
                |||||| ||| ||||||||||||| ||||||   ||||||||||||||||||| ||||| 
Sbjct: 17856507 tgtcaataagttttactgtgcttgctgttgt---ctctcttgagttgtactttcagtttt 17856451

                                             
Query: 283      ttgccacctatctggaaaccgttcatcat 311
                || |||||||  ||| | |||||||||||
Sbjct: 17856450 ttaccacctaattggtatccgttcatcat 17856422



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                            
Query: 357      accgaagcatttgctggaaccagttgctttgtcaacaaacaccttggnacttattactct 416
                |||||||||||| ||   ||||||||||||||| ||||| || || | ||| | ||||||
Sbjct: 17856301 accgaagcatttactaagaccagttgctttgtctacaaaaactttagcactcagtactct 17856242

                      
Query: 417      accaaa 422
                ||||||
Sbjct: 17856241 accaaa 17856236
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>dbj|AK073796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067B10, full
            insert sequence
          Length = 1739

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 76/89 (85%), Gaps = 3/89 (3%)
 Strand = Plus / Minus

                                                                        
Query: 223  tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 282
            |||||| ||| ||||||||||||| ||||||   ||||||||||||||||||| ||||| 
Sbjct: 1495 tgtcaataagttttactgtgcttgctgttgt---ctctcttgagttgtactttcagtttt 1439

                                         
Query: 283  ttgccacctatctggaaaccgttcatcat 311
            || |||||||  ||| | |||||||||||
Sbjct: 1438 ttaccacctaattggtatccgttcatcat 1410



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 343  tcatagnttacaaaaccgaagcatttgctggaaccagttgctttgtcaacaaacaccttg 402
            |||||| ||| ||||||||||||||| ||   ||||||||||||||| ||||| || || 
Sbjct: 1378 tcatagcttataaaaccgaagcatttactaagaccagttgctttgtctacaaaaacttta 1319

                                
Query: 403  gnacttattactctaccaaa 422
            | ||| | ||||||||||||
Sbjct: 1318 gcactcagtactctaccaaa 1299
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>dbj|AK073553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045O20, full
            insert sequence
          Length = 2722

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 76/89 (85%), Gaps = 3/89 (3%)
 Strand = Plus / Minus

                                                                        
Query: 223  tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 282
            |||||| ||| ||||||||||||| ||||||   ||||||||||||||||||| ||||| 
Sbjct: 2516 tgtcaataagttttactgtgcttgctgttgt---ctctcttgagttgtactttcagtttt 2460

                                         
Query: 283  ttgccacctatctggaaaccgttcatcat 311
            || |||||||  ||| | |||||||||||
Sbjct: 2459 ttaccacctaattggtatccgttcatcat 2431



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 343  tcatagnttacaaaaccgaagcatttgctggaaccagttgctttgtcaacaaacaccttg 402
            |||||| ||| ||||||||||||||| ||   ||||||||||||||| ||||| || || 
Sbjct: 2399 tcatagcttataaaaccgaagcatttactaagaccagttgctttgtctacaaaaacttta 2340

                                
Query: 403  gnacttattactctaccaaa 422
            | ||| | ||||||||||||
Sbjct: 2339 gcactcagtactctaccaaa 2320
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>gb|AY107712.1| Zea mays PCO079656 mRNA sequence
          Length = 471

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                       
Query: 236 tactgtgcttgttgttgttgtctctcttgagttgtactttgagtttcttgccacctatct 295
           ||||||||||| ||||||| |||||||| |||||||| |||||||| || || |||| ||
Sbjct: 191 tactgtgcttggtgttgttttctctcttcagttgtaccttgagttttttaccgcctaact 132

                         
Query: 296 ggaaaccgttcatc 309
           || | |||||||||
Sbjct: 131 ggtagccgttcatc 118



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 352 acaaaaccgaagcatttgctggaaccagttgctttgtcaacaaacacctt 401
           ||||||||||||||||||||    || ||||||||||| || ||||||||
Sbjct: 75  acaaaaccgaagcatttgctcacgcccgttgctttgtccacgaacacctt 26
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>gb|AC122543.1| Genomic sequence for Brassica oleracea, clone B21H13, complete sequence
          Length = 101563

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                         
Query: 244   ttgttgttgttgtctctcttgagttgtactttgagtttcttgccacctatctggaaaccg 303
             |||||||||||||||||||| || || ||||| |||||||| |||||||  ||| |||| 
Sbjct: 50317 ttgttgttgttgtctctcttaagctggactttcagtttcttaccacctaaatgggaacca 50376

                      
Query: 304   ttcatcatg 312
             |||||||||
Sbjct: 50377 ttcatcatg 50385
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>gb|AY104506.1| Zea mays PCO080326 mRNA sequence
          Length = 1081

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 49/55 (89%), Gaps = 3/55 (5%)
 Strand = Plus / Minus

                                                                  
Query: 221 tttgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtacttt 275
           ||||||| |||||||||||||||   ||| |||||||||||||||| ||||||||
Sbjct: 774 tttgtcagaaaggtttactgtgc---ttgctgttgtctctcttgagctgtacttt 723
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>ref|NM_116545.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT4G03110
            transcript variant AT4G03110.1 mRNA, complete cds
          Length = 1759

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                        
Query: 342  gtcatagnttacaaaaccgaagcatttgctggaaccagttgctttgtcaacaaacacctt 401
            ||||||| | ||||||||||| ||||||||   |||||| |||||||| ||||| |||||
Sbjct: 1321 gtcatagctaacaaaaccgaaacatttgcttacaccagtggctttgtctacaaaaacctt 1262

                  
Query: 402  ggnact 407
            || |||
Sbjct: 1261 ggcact 1256
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>gb|AY084669.1| Arabidopsis thaliana clone 114653 mRNA, complete sequence
          Length = 1746

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                        
Query: 342  gtcatagnttacaaaaccgaagcatttgctggaaccagttgctttgtcaacaaacacctt 401
            ||||||| | ||||||||||| ||||||||   |||||| |||||||| ||||| |||||
Sbjct: 1322 gtcatagctaacaaaaccgaaacatttgcttacaccagtggctttgtctacaaaaacctt 1263

                  
Query: 402  ggnact 407
            || |||
Sbjct: 1262 ggcact 1257
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>gb|AC101559.20| Mus musculus chromosome 5, clone RP23-194K16, complete sequence
          Length = 252554

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 24     aataataaaataacacaatgc 44
              |||||||||||||||||||||
Sbjct: 119249 aataataaaataacacaatgc 119269
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>ref|XM_817392.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.70.5420)
           partial mRNA
          Length = 1446

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 245 tgttgttgttgtctctcttga 265
           |||||||||||||||||||||
Sbjct: 752 tgttgttgttgtctctcttga 732
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>gb|AC163694.2| Mus musculus BAC clone RP24-80O2 from chromosome 16, complete sequence
          Length = 244730

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 250   ttgttgtctctcttgagttgt 270
             |||||||||||||||||||||
Sbjct: 59888 ttgttgtctctcttgagttgt 59868
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>emb|BX936416.11| Zebrafish DNA sequence from clone CH211-194I16 in linkage group 18,
              complete sequence
          Length = 214763

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 236    tactgtgcttgttgttgttgt 256
              |||||||||||||||||||||
Sbjct: 120025 tactgtgcttgttgttgttgt 120045
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>emb|CT030641.11| Mouse DNA sequence from clone RP23-32M15 on chromosome 16, complete
             sequence
          Length = 224292

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 250   ttgttgtctctcttgagttgt 270
             |||||||||||||||||||||
Sbjct: 21142 ttgttgtctctcttgagttgt 21162
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>ref|NM_124994.3| Arabidopsis thaliana unknown protein AT5G56120 mRNA, complete cds
          Length = 1027

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 ttgttgttgttgtctctctt 263
           ||||||||||||||||||||
Sbjct: 156 ttgttgttgttgtctctctt 137
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>ref|NM_119810.1| Arabidopsis thaliana S-adenosylmethionine-dependent
           methyltransferase AT4G36470 mRNA, complete cds
          Length = 1116

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 247 ttgttgttgtctctcttgag 266
           ||||||||||||||||||||
Sbjct: 380 ttgttgttgtctctcttgag 361
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>ref|XM_639566.1| Dictyostelium discoideum hypothetical protein (DDB0217191), partial
           mRNA
          Length = 2238

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 gtgcttgttgttgttgtctc 259
           ||||||||||||||||||||
Sbjct: 118 gtgcttgttgttgttgtctc 99
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>ref|XM_639501.1| Dictyostelium discoideum hypothetical protein (DDB0185148), partial
           mRNA
          Length = 2238

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 gtgcttgttgttgttgtctc 259
           ||||||||||||||||||||
Sbjct: 118 gtgcttgttgttgttgtctc 99
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>gb|AC018631.3| Drosophila melanogaster clone BACR03I06, complete sequence
          Length = 169851

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 221    tttgtcaaaaaggtttactgtgct 244
              ||||||||||||||| ||||||||
Sbjct: 122658 tttgtcaaaaaggttaactgtgct 122635
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>gb|AC148970.3| Medicago truncatula chromosome 2 BAC clone mth2-74j13, complete
             sequence
          Length = 83100

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    aataataaaataacacaatg 43
             ||||||||||||||||||||
Sbjct: 23419 aataataaaataacacaatg 23400
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>gb|BT014888.1| Arabidopsis thaliana unknown protein (At4g36470) mRNA, complete cds
          Length = 1116

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 247 ttgttgttgtctctcttgag 266
           ||||||||||||||||||||
Sbjct: 380 ttgttgttgtctctcttgag 361
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>gb|BT011992.1| Arabidopsis thaliana At4g36470 mRNA sequence
          Length = 1113

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 247 ttgttgttgtctctcttgag 266
           ||||||||||||||||||||
Sbjct: 377 ttgttgttgtctctcttgag 358
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>gb|BT010876.1| Arabidopsis thaliana At5g56120 gene, complete cds
          Length = 711

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 ttgttgttgttgtctctctt 263
           ||||||||||||||||||||
Sbjct: 75  ttgttgttgttgtctctctt 56
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>gb|AC139183.4| Mus musculus BAC clone RP24-114C21 from chromosome 18, complete sequence
          Length = 147109

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    ttgttgttgttgtctctctt 263
              ||||||||||||||||||||
Sbjct: 115319 ttgttgttgttgtctctctt 115338
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>gb|AC159889.2| Mus musculus BAC clone RP24-81G6 from chromosome 9, complete sequence
          Length = 154807

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 235   ttactgtgcttgttgttgttgtct 258
             ||||||||||| ||||||||||||
Sbjct: 57037 ttactgtgcttattgttgttgtct 57014
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>emb|AL591214.8| Human DNA sequence from clone RP11-18I23 on chromosome 9 Contains part
             of one variant of the ROR2 gene for receptor tyrosine
             kinase-like orphan receptor 2, complete sequence
          Length = 66959

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   gcattgtcatcacagatgat 218
             ||||||||||||||||||||
Sbjct: 50378 gcattgtcatcacagatgat 50359
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>emb|AL356111.13| Human DNA sequence from clone RP11-501G6 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 150955

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    cttgttgttgttgtctctct 262
              ||||||||||||||||||||
Sbjct: 105234 cttgttgttgttgtctctct 105253
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>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2
          Length = 198354

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    ttgttgttgtctctcttgag 266
              ||||||||||||||||||||
Sbjct: 153408 ttgttgttgtctctcttgag 153389
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>ref|XM_775954.1| PREDICTED: Strongylocentrotus purpuratus similar to bruno-like 6,
           RNA binding protein (LOC575560), mRNA
          Length = 1068

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 337 gggttgtcatagnttacaaaaccgaagcatttgct 371
           ||||||||| || | |||||||||||||| |||||
Sbjct: 962 gggttgtcaaagctcacaaaaccgaagcacttgct 928
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>emb|AL929356.1|PFA929356 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5
          Length = 335050

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     agaataataaaataacacaa 41
              ||||||||||||||||||||
Sbjct: 165491 agaataataaaataacacaa 165510
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>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85
          Length = 198750

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   ttgttgttgtctctcttgag 266
             ||||||||||||||||||||
Sbjct: 97320 ttgttgttgtctctcttgag 97339
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>emb|BX005003.10| Zebrafish DNA sequence from clone DKEY-241F8 in linkage group 13,
             complete sequence
          Length = 172889

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   ttgttgttgttgtctctctt 263
             ||||||||||||||||||||
Sbjct: 86477 ttgttgttgttgtctctctt 86458
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>gb|AC104165.2| Homo sapiens chromosome 3 clone RP11-681O4, complete sequence
          Length = 200956

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    gtttactgtgcttgttgttg 252
              ||||||||||||||||||||
Sbjct: 102711 gtttactgtgcttgttgttg 102692
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>gb|AC114688.3| Homo sapiens chromosome 18, clone RP11-316J22, complete sequence
          Length = 166525

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    agctgagaataataaaataa 36
             ||||||||||||||||||||
Sbjct: 80290 agctgagaataataaaataa 80271



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    agctgagaataataaaataa 36
             ||||||||||||||||||||
Sbjct: 73806 agctgagaataataaaataa 73787
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>gb|AY191018.1| Dictyostelium discoideum autophagy protein 4 (apg4) gene, complete
           cds
          Length = 2694

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 gtgcttgttgttgttgtctc 259
           ||||||||||||||||||||
Sbjct: 248 gtgcttgttgttgttgtctc 229
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>gb|AC016098.8| Homo sapiens, clone RP11-25P13, complete sequence
          Length = 156275

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    agctgagaataataaaataa 36
             ||||||||||||||||||||
Sbjct: 97804 agctgagaataataaaataa 97823



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    agctgagaataataaaataa 36
             ||||||||||||||||||||
Sbjct: 91315 agctgagaataataaaataa 91334
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>ref|XM_696884.1| PREDICTED: Danio rerio hypothetical protein LOC554850 (LOC554850),
            mRNA
          Length = 2773

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                               
Query: 337  gggttgtcatagnttacaaaaccgaagcatttgct 371
            ||||||||  || |||||||||| |||||||||||
Sbjct: 1462 gggttgtcgaagcttacaaaaccaaagcatttgct 1428
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>emb|AL844143.17| Mouse DNA sequence from clone RP23-370D19 on chromosome 4, complete
              sequence
          Length = 159305

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 26     taataaaataacacaatgcaacaa 49
              ||||||||||| ||||||||||||
Sbjct: 113818 taataaaataaaacaatgcaacaa 113841
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>gb|AC151523.4| Medicago truncatula chromosome 7 BAC clone mth2-166j21, complete
             sequence
          Length = 123340

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   ttgttgttgttgtctctctt 263
             ||||||||||||||||||||
Sbjct: 31122 ttgttgttgttgtctctctt 31103
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>gb|AC158774.6| Mus musculus chromosome 18, clone RP23-427N16, complete sequence
          Length = 207351

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    ttgttgttgttgtctctctt 263
              ||||||||||||||||||||
Sbjct: 103296 ttgttgttgttgtctctctt 103315
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>gb|AC020559.4|AC020559 Homo sapiens BAC clone RP11-527F13 from 6, complete sequence
          Length = 194079

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     agaataataaaataacacaa 41
              ||||||||||||||||||||
Sbjct: 169151 agaataataaaataacacaa 169132
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>gb|AC124787.6| Mus musculus chromosome 18, clone RP24-395J18, complete sequence
          Length = 164628

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    ttgttgttgttgtctctctt 263
              ||||||||||||||||||||
Sbjct: 120858 ttgttgttgttgtctctctt 120877
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>gb|AC116330.2| Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4,
             complete sequence
          Length = 132254

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   gtgcttgttgttgttgtctc 259
             ||||||||||||||||||||
Sbjct: 51232 gtgcttgttgttgttgtctc 51251
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>dbj|AK176891.1| Arabidopsis thaliana mRNA for putative protein, complete cds,
           clone: RAFL25-45-H17
          Length = 1175

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 ttgttgttgttgtctctctt 263
           ||||||||||||||||||||
Sbjct: 185 ttgttgttgttgtctctctt 166
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>dbj|AB011476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDA7
          Length = 82033

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   ttgttgttgttgtctctctt 263
             ||||||||||||||||||||
Sbjct: 55877 ttgttgttgttgtctctctt 55858
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>gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 of 73 of the complete
              sequence
          Length = 585533

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 221    tttgtcaaaaaggtttactgtgct 244
              ||||||||||||||| ||||||||
Sbjct: 299376 tttgtcaaaaaggttaactgtgct 299399
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>dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-344L21, complete
             sequence
          Length = 186656

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 244   ttgttgttgttgtctctcttgagttgta 271
             ||||||||||||| | ||||||||||||
Sbjct: 49861 ttgttgttgttgtttttcttgagttgta 49834
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 103     attcgctgggcggcacggtg 122
               ||||||||||||||||||||
Sbjct: 2419060 attcgctgggcggcacggtg 2419079


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,620,383
Number of Sequences: 3902068
Number of extensions: 4620383
Number of successful extensions: 90662
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90477
Number of HSP's gapped (non-prelim): 174
length of query: 495
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 473
effective length of database: 17,147,199,772
effective search space: 8110625492156
effective search space used: 8110625492156
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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