ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25p13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YB8B_YEAST (P38355) Protein YBR287W 27 8.9
2YQ5C_CAEEL (Q09466) Putative ABC transporter C16C10.12 in chromo... 27 8.9

>YB8B_YEAST (P38355) Protein YBR287W|
          Length = 427

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 214 LILISYSTVME*STGILPESIHKLYSLFISDLFSP 110
           +++I+ +     S+G+LP+   K+ SL   DLF+P
Sbjct: 21  VVIIALAGFWSASSGLLPKQSQKIISLLNVDLFTP 55



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>YQ5C_CAEEL (Q09466) Putative ABC transporter C16C10.12 in chromosome III|
          Length = 610

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 268 WISRILGYYSIFLYDDTILILISY 197
           +ISR L Y  +F  D  ++I+ISY
Sbjct: 438 YISRFLSYLPLFTIDGALMIVISY 461


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,848,304
Number of Sequences: 219361
Number of extensions: 1063435
Number of successful extensions: 1802
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1802
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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