ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25p07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... 182 4e-46
2DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... 128 6e-30
3DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... 126 3e-29
4DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme... 36 0.057
5DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme... 34 0.22
6DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (... 33 0.28
7DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme... 33 0.48
8PKN1_CHLCV (Q822R1) Serine/threonine-protein kinase pkn1 (EC 2.7... 30 4.1
9CJ091_HUMAN (Q5T1B1) Protein C10orf91 29 5.3

>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 393

 Score =  182 bits (462), Expect = 4e-46
 Identities = 90/103 (87%), Positives = 94/103 (91%), Gaps = 2/103 (1%)
 Frame = -2

Query: 467 VTXFGXXGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVF 288
           VT FG  GHAATWGKKLDAEAYDCNN+VEQELPCGGVLIYQSF ANEE+AVSAGSPRSVF
Sbjct: 293 VTIFGGRGHAATWGKKLDAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVF 352

Query: 287 HCFEGENVESGHPLVKEGKLANLLAWRXEEDSLEE--GAVLCE 165
           HCF  ENVESGHPLVKEGKLANLLAWR EE+SLEE  GA+LCE
Sbjct: 353 HCF--ENVESGHPLVKEGKLANLLAWRAEEESLEEGTGALLCE 393



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>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 398

 Score =  128 bits (322), Expect = 6e-30
 Identities = 63/95 (66%), Positives = 74/95 (77%)
 Frame = -2

Query: 467 VTXFGXXGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVF 288
           VT FG  GHA TW K+L+A+AY CNN+VEQELPCGG+LIYQSF A E+V V+ GSP+SV 
Sbjct: 300 VTIFGGHGHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVL 359

Query: 287 HCFEGENVESGHPLVKEGKLANLLAWRXEEDSLEE 183
           HCFE EN+ +  P VKEGKL NLL W   ED+LEE
Sbjct: 360 HCFEAENMVNPAP-VKEGKLGNLLPW--GEDALEE 391



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>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 400

 Score =  126 bits (316), Expect = 3e-29
 Identities = 63/98 (64%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
 Frame = -2

Query: 467 VTXFGXXGHAATWGKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVF 288
           VT FG  GHA TWGK L AE YDCNN+VEQELP GG+L+YQSF A E+    A SP+SVF
Sbjct: 300 VTIFGGRGHAGTWGKALGAEVYDCNNMVEQELPGGGLLVYQSFCAAEDAV--ATSPKSVF 357

Query: 287 HCFEGENVESG-HPLVKEGKLANLLAWRXEEDSLEEGA 177
           HCF+GENVES   P+ K+ KLANLL W  E D++EE A
Sbjct: 358 HCFDGENVESAPPPMKKDYKLANLLCWEEEADAMEEKA 395



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>DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 353

 Score = 35.8 bits (81), Expect = 0.057
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -2

Query: 428 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 261
           G  LD + Y C+    Q L   G ++YQ F      A   GSPRS   C++ E+ E
Sbjct: 301 GCLLDVKGYCCDEKSHQGLGMSGSVVYQKFVK----ASDCGSPRSTLKCWKDEDEE 352



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>DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 362

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -2

Query: 422 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 267
           KLD + Y C     + L  GG ++Y  FT+      S GSPRS   C   EN
Sbjct: 305 KLDVKGYACGERSYEGLNKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352



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>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 353

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -2

Query: 428 GKKLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 261
           G  LD + Y C     Q L   G ++YQ F          GSPRS   C++ E+ E
Sbjct: 301 GCLLDVKGYCCEEKSHQGLGMSGSVVYQKFLKTS----YCGSPRSTLKCWKDEDEE 352



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>DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 362

 Score = 32.7 bits (73), Expect = 0.48
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 422 KLDAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 267
           +LD + Y C     + L  GG ++Y  FT+      S GSPRS   C   EN
Sbjct: 305 ELDVKGYACGERSYEALGKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352



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>PKN1_CHLCV (Q822R1) Serine/threonine-protein kinase pkn1 (EC 2.7.11.1)|
          Length = 618

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -2

Query: 467 VTXFGXXGHAATWGKKLDAEA----YDCNNIVEQELPCG 363
           VT +G  G+A+  GK+L  EA      C  + +   PCG
Sbjct: 473 VTWYGASGYASWVGKRLPTEAEWEIASCGGVTQLRYPCG 511



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>CJ091_HUMAN (Q5T1B1) Protein C10orf91|
          Length = 145

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 456 RXXRPRRHLGQEAXRRGIRLQQHRGAGAPLRGRPHLP 346
           R   P  H GQ    R + L+Q +   AP  GRP  P
Sbjct: 62  RSTSPISHQGQPQTTRALSLRQPQHPSAPASGRPRPP 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,890,969
Number of Sequences: 219361
Number of extensions: 945196
Number of successful extensions: 2805
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2801
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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