ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25p06 |
|---|---|
| Clone Library Name | barley_pub |
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 30.8 bits (68), Expect = 0.82 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Frame = -1 Query: 380 PSAKMPLLHVMSAPSARRLLP-PHVKRRPLPASRTVLLQLHLLNAGVLDLGPLQILHPTP 204 P A + H +S + + P H LP+ +L H+++ G G L LHP P Sbjct: 2189 PPAPVHAQHALSFSNLHEMQPLAHGASTVLPSVSQLLSHHHIVSPGSGSAGSLSRLHPVP 2248 Query: 203 LP 198 +P Sbjct: 2249 VP 2250
>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting| gene 1) (Rig-1) Length = 1366 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/55 (29%), Positives = 19/55 (34%) Frame = +1 Query: 112 WKEDGKNLSQQAGRARRISGQEASAPPASGRGVG*RICRGPRSRTPAFSRCSWSS 276 W E+ S G G + GRG G CR P S C WS+ Sbjct: 1300 WGEESGAGSASRGPTSSQRGPHPDGKESQGRGRGLEACRSPNSPQLPLDSCIWST 1354
>WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family member 1| (WASP-family protein member 1) (WAVE-1 protein) Length = 559 Score = 29.6 bits (65), Expect = 1.8 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Frame = -1 Query: 380 PSAKMPLLHVMSAPSARRLL----PPHVKRRPLPASRTVLLQLHLLNAGVLDLGPLQILH 213 P PL +S S R + PP V P P + + L + P +LH Sbjct: 325 PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAP-GVLH 383 Query: 212 PTPLPLAGGAEASWPEMRRALPAC 141 P P P+A P + RA P C Sbjct: 384 PAPPPIAPPLVQPSPPVARAAPVC 407
>WASF1_HUMAN (Q92558) Wiskott-Aldrich syndrome protein family member 1| (WASP-family protein member 1) (WAVE-1 protein) (Verprolin homology domain-containing protein 1) Length = 559 Score = 29.6 bits (65), Expect = 1.8 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Frame = -1 Query: 380 PSAKMPLLHVMSAPSARRLL----PPHVKRRPLPASRTVLLQLHLLNAGVLDLGPLQILH 213 P PL +S S R + PP V P P + + L + P +LH Sbjct: 325 PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAP-GVLH 383 Query: 212 PTPLPLAGGAEASWPEMRRALPAC 141 P P P+A P + RA P C Sbjct: 384 PAPPPIAPPLVQPSPPVARAAPVC 407
>MYB_XENLA (Q08759) Myb protein| Length = 624 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = -1 Query: 356 HVMSAPSARRLLPPHVKRRPLPASRTVLLQLHLLNAGVLDLGPLQILHPTPLPLA 192 H++ P+ +R + R P P + Q GPL++LH TPL LA Sbjct: 433 HLLRTPAIKRSILNSTPRTPTPFKNALAAQ-------EFKHGPLKLLHHTPLHLA 480
>ESAM_HUMAN (Q96AP7) Endothelial cell-selective adhesion molecule precursor| Length = 390 Score = 28.9 bits (63), Expect = 3.1 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 1/84 (1%) Frame = -1 Query: 347 SAPSARRLLPPHVKRRPLPASRTVLLQLHLLNAGVLDLGPLQILHPTPL-PLAGGAEASW 171 S SAR L PPH RP + T L L + L HP P+ P+ GG +S Sbjct: 312 SVTSARALRPPHGPPRPGALTPTPSLSSQALPSP--RLPTTDGAHPQPISPIPGGVSSSG 369 Query: 170 PEMRRALPACWLRFLPSSFQAWEL 99 A+P +P+ QA L Sbjct: 370 LSRMGAVPV----MVPAQSQAGSL 389
>CRF_CANFA (P49926) Corticoliberin precursor (Corticotropin-releasing factor)| (CRF) (Corticotropin-releasing hormone) Length = 196 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = -1 Query: 323 LPPHVKRRPLPASRTVLLQL---HLLNAGVLDLGPLQILHPTPLPLAGGA 183 LPP ++ P +R VL ++ + L G L+ P L P P+AGG+ Sbjct: 49 LPPQPQQPQQPQARPVLYRMGEEYFLRLGNLNKSPAAPLLPASSPVAGGS 98
>OTOF_HUMAN (Q9HC10) Otoferlin (Fer-1-like protein 2)| Length = 1997 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = +1 Query: 241 RTPAFSRCSWSSTVRLAGRGRLLTCGGRSLLAEG 342 R P S SW++TVRL R R+L GG S + G Sbjct: 1232 RPPDRSAPSWNTTVRLLRRCRVLCNGGSSSHSTG 1265
>SMBP2_HUMAN (P38935) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent| helicase IGHMBP2) (Immunoglobulin mu-binding protein 2) (SMUBP-2) (Glial factor 1) (GF-1) Length = 993 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +1 Query: 100 SSQAWKEDGKNLSQQAGRARRISGQEASAPPASGR 204 S A K G S + G R+ GQEA+AP GR Sbjct: 660 SHAATKPQGPATSTRTGSQRQEGGQEAAAPARQGR 694
>PYY_HUMAN (P10082) Peptide YY precursor (PYY) (PYY-I) (Peptide tyrosine| tyrosine) [Contains: Peptide YY(3-36) (PYY-II)] Length = 97 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = -1 Query: 305 RRPLPASRTVLLQLHLLNAGVLDLGPLQILHPTPLPLAGGAEASWPEMRR 156 RRP PA TVLL L + ++D P++ P A G +AS E+ R Sbjct: 5 RRPWPALTTVLLALLVCLGALVDAYPIK-------PEAPGEDASPEELNR 47
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = -1 Query: 359 LHVMSAPSARRLLPPHVKRRPLPASRTVL---LQLHLLNAGVLDLGPLQILHPTPLPLAG 189 LH A +A LLPP + + P P + ++L L L A V L P +L LP+ Sbjct: 379 LHPALAQAAPALLPPGIFQAPTPVAPSLLGVPAGLQPLQAVVPTLPPPALLATPTLPMTV 438 Query: 188 G 186 G Sbjct: 439 G 439
>GP113_HUMAN (Q8IZF5) Probable G-protein coupled receptor 113 precursor| (G-protein coupled receptor PGR23) Length = 1079 Score = 28.1 bits (61), Expect = 5.3 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = +1 Query: 166 SGQEASAP-PASGRGVG*RICRGPRSRTPAFSRCSWSSTVRLAGRGRLLTCGGRSLLAEG 342 +G A AP P S RG+ R+C P S C+ + + L R +LL G S E Sbjct: 445 AGHVAQAPCPESKRGIVRRLCGADGVWGPVHSSCTDARLLALFTRTKLLQAGQGSPAEEV 504 Query: 343 ADITCR-RGILAEGTS 387 I + G AE +S Sbjct: 505 PQILAQLPGQAAEASS 520
>CWC22_DEBHA (Q6BU84) Pre-mRNA-splicing factor CWC22| Length = 637 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = +1 Query: 127 KNLS-QQAGRARRISGQEASAPPASGRGVG*RICRGPRSRTPAFSRCSWSSTVRLAGRGR 303 KNL ++ GR+R +SG S + R G SR+ + SR S R RGR Sbjct: 537 KNLPPEERGRSRSVSGSSRSGSSSYSRSRSYSRSSGSYSRSRSRSRSRSRSRSRTGSRGR 596 Query: 304 LLT 312 ++ Sbjct: 597 TMS 599
>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type-1| retrotransposable element R2 (Retrovirus-related Pol polyprotein from type I retrotransposable element R2) [Includes: Reverse transcriptase (EC 2.7.7.49); Endonuclease] (Fragment) Length = 606 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 200 PLAGGAEASWPEMRRALPACWLRFLPSSFQAWELHTQLK 84 PL GA WP R +P C + +P++ +A +HT LK Sbjct: 543 PLLLGARGIWP--RANVPTCNILSIPTTLRASCVHTCLK 579
>GNEFR_HUMAN (Q9UGK8) Guanine nucleotide exchange factor-related protein| (Deafness locus associated putative guanine nucleotide exchange factor) (DelGEF) Length = 458 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = +1 Query: 262 CSWSSTVRLAGRGRLLTCGGRSLLAEGADITCRRGILAE 378 C W T+ L G++L+CG S G RR ++ + Sbjct: 108 CGWDFTIMLTENGQVLSCGSNSFGQLGVPHGPRRCVVPQ 146
>GLUB7_ORYSA (Q52PJ1) Glutelin type-B 7 precursor [Contains: Glutelin type-B 7| acidic chain; Glutelin type-B 7 basic chain] Length = 495 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +2 Query: 89 IVYEAPRLGRRTAK-ISASRQEEHGAFQARKLQRLQP 196 +V A R+ R A+ I +R EEHGAF R Q+ P Sbjct: 447 VVANAYRISREQARSIKNNRGEEHGAFTPRFQQQYYP 483
>GLUB2_ORYSA (Q02897) Glutelin type-B 2 precursor [Contains: Glutelin type-B 2| acidic chain; Glutelin type-B 2 basic chain] Length = 495 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +2 Query: 89 IVYEAPRLGRRTAK-ISASRQEEHGAFQARKLQRLQP 196 +V A R+ R A+ I +R EEHGAF R Q+ P Sbjct: 447 VVANAYRISREQARSIKNNRGEEHGAFTPRFQQQYYP 483
>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1776 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Frame = -1 Query: 344 APSARRLLPPHVKRRPLPASRTVLLQLHLLNAGVLDLGP--LQILHPTPLPLAGGAEASW 171 +P A L+PP +P P + L LNA P + P+P+P + A Sbjct: 566 SPPAPALVPPTQPPQPQPWEEIISTFLSSLNASSHKPSPSSAPLESPSPIPESFEVLAEA 625 Query: 170 PEMRRALPAC 141 P+ +R++ C Sbjct: 626 PQHQRSINEC 635
>DAPD_BORPE (P0A4U8) 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate| N-succinyltransferase (EC 2.3.1.117) (Tetrahydrodipicolinate N-succinyltransferase) (THP succinyltransferase) (Tetrahydropicolinate succinylase) Length = 273 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 284 RTVLLQLHLLNAGVLDLGPLQILHPTPLPLAGGAEASW 171 + VLL L + V+ GPLQ P AG EA++ Sbjct: 62 KAVLLSFRLHDNAVMGQGPLQFYDKVPTKFAGYGEAAF 99
>DAPD_BORPA (Q7W8Y2) 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate| N-succinyltransferase (EC 2.3.1.117) (Tetrahydrodipicolinate N-succinyltransferase) (THP succinyltransferase) (Tetrahydropicolinate succinylase) Length = 273 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 284 RTVLLQLHLLNAGVLDLGPLQILHPTPLPLAGGAEASW 171 + VLL L + V+ GPLQ P AG EA++ Sbjct: 62 KAVLLSFRLHDNAVMGQGPLQFYDKVPTKFAGYGEAAF 99
>DAPD_BORBR (P0A4U9) 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate| N-succinyltransferase (EC 2.3.1.117) (Tetrahydrodipicolinate N-succinyltransferase) (THP succinyltransferase) (Tetrahydropicolinate succinylase) Length = 273 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 284 RTVLLQLHLLNAGVLDLGPLQILHPTPLPLAGGAEASW 171 + VLL L + V+ GPLQ P AG EA++ Sbjct: 62 KAVLLSFRLHDNAVMGQGPLQFYDKVPTKFAGYGEAAF 99
>RM12_CRICR (P52827) 39S ribosomal protein L12, mitochondrial precursor (L12mt)| (MRP-L12) (P2A1) Length = 203 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +2 Query: 101 APRLGRRTAKISASRQEEHGAFQARKL 181 APRLG R A++ +RQ+ G AR+L Sbjct: 13 APRLGLRGARLRLARQQVPGVCAARQL 39
>AOC2_HUMAN (O75106) Retina-specific copper amine oxidase precursor (EC| 1.4.3.6) (RAO) (Amine oxidase [copper-containing]) Length = 756 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/84 (23%), Positives = 29/84 (34%) Frame = -1 Query: 314 HVKRRPLPASRTVLLQLHLLNAGVLDLGPLQILHPTPLPLAGGAEASWPEMRRALPACWL 135 H+K LP + L N L +H TP L G A+W + + L Sbjct: 178 HLKEVELPKAPIFLSSTFNYNGSTL-----AAVHATPRGLRSGDRATWMALYHNISGVGL 232 Query: 134 RFLPSSFQAWELHTQLKVCHWYLE 63 P + H L HW ++ Sbjct: 233 FLHPVGLELLLDHRALDPAHWTVQ 256
>GNEFR_MOUSE (Q80YD6) Guanine nucleotide exchange factor-related protein| (Deafness locus associated putative guanine nucleotide exchange factor) (DelGEF) Length = 464 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = +1 Query: 220 ICRGPRSRTPAFSRCSWSSTVRLAGRGRLLTCGGRS 327 IC+ R C W T+ L +G++L+CG + Sbjct: 94 ICKPLRGCPIRQVACGWDFTIMLTEKGQVLSCGSNA 129
>GDF15_HUMAN (Q99988) Growth/differentiation factor 15 precursor (GDF-15)| (Placental bone morphogenic protein) (Placental TGF-beta) (Macrophage inhibitory cytokine 1) (MIC-1) (Prostate differentiation factor) (NSAID-regulated protein 1) (NRG-1) Length = 308 Score = 27.3 bits (59), Expect = 9.1 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Frame = -1 Query: 269 QLHLLNAGVLDLGPLQ-ILHPTPLPLAGGAEASWPEMRRALPACWLRFLPSSFQAWELHT 93 +LH + A + DLG +L P + ++ + AC PS F+A +H Sbjct: 212 RLHTVRASLEDLGWADWVLSPREV-----------QVTMCIGAC-----PSQFRAANMHA 255 Query: 92 QLKVCHWYLEARLLEFACCAPKFSN 18 Q+K L+ + CC P N Sbjct: 256 QIKTSLHRLKPDTVPAPCCVPASYN 280
>DHCR7_BOVIN (Q5E9J5) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 475 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Frame = +3 Query: 129 KSQPAG--RKSTAHFRPGSFSASSQWKRSW 212 KSQP+ KST+ G+ +A QW R+W Sbjct: 4 KSQPSAPKTKSTSGLTNGNAAAQGQWGRAW 33
>EFTU2_SOYBN (P46280) Elongation factor Tu, chloroplast precursor (EF-Tu)| Length = 479 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = -1 Query: 347 SAPSARRLLPPHVKRRPLPASRTVLLQLHLLNAGVLD---LGPLQILH 213 +A +++ PPHV P P+S + L+ H +A L + P ILH Sbjct: 7 AATTSKLAYPPHVHFSPSPSSNYLFLKTHKPSATHLSSSFIHPTTILH 54
>HRDA_STRCO (P18182) RNA polymerase principal sigma factor hrdA| Length = 396 Score = 27.3 bits (59), Expect = 9.1 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Frame = -1 Query: 335 ARRLLPPHVKRRPLPASRTVLLQLHLLNAGVLDLGPLQILHPTPL-PLAGGAEASWPEMR 159 A RL PP +RRP PA A +L++ P+Q T AGGAE P+ Sbjct: 8 ASRLRPPTYRRRPPPA------------ASILEVAPVQTQTLTQTDTAAGGAE---PDAE 52 Query: 158 R----ALPA 144 R A+PA Sbjct: 53 RGVLLAMPA 61 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,895,611 Number of Sequences: 219361 Number of extensions: 1142074 Number of successful extensions: 3386 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3313 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3386 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
