>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC|
           1.1.1.86) (Acetohydroxy-acid reductoisomerase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 591

 Score =  107 bits (266), Expect = 1e-23
 Identities = 53/63 (84%), Positives = 56/63 (88%)
 Frame = -2

Query: 320 YILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVTADADFVRPELR 141
           YILTQQA V VD  A IN+DLISNF SDPVHGAIEVCA+LRPTVDISV ADADFVRPELR
Sbjct: 528 YILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELR 587

Query: 140 QSA 132
           QS+
Sbjct: 588 QSS 590

>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC|
           1.1.1.86) (Acetohydroxy-acid reductoisomerase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 581

 Score =  105 bits (263), Expect = 2e-23
 Identities = 52/61 (85%), Positives = 55/61 (90%)
 Frame = -2

Query: 320 YILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVTADADFVRPELR 141
           YILTQQA V VD  APINQDLISNF+SDPVHGAI+VCAELRPT+DISV A ADFVRPELR
Sbjct: 518 YILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELR 577

Query: 140 Q 138
           Q
Sbjct: 578 Q 578

>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC|
           1.1.1.86) (Acetohydroxy-acid reductoisomerase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 595

 Score =  104 bits (259), Expect = 6e-23
 Identities = 51/62 (82%), Positives = 56/62 (90%)
 Frame = -2

Query: 320 YILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVTADADFVRPELR 141
           YIL+QQA V VD  APINQDLISNF+SDPVH AI VCA+LRP+VDISVTADADFVRPELR
Sbjct: 534 YILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELR 593

Query: 140 QS 135
           Q+
Sbjct: 594 QA 595

>VIE2_HCMVT (P06435) 45 kDa immediate-early protein 2 (IE2)|
          Length = 410

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 23  SLPXHSSSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDARS 163
           S P   S   +  S TH L  MN PP+   L RP+   ++ +    S
Sbjct: 52  SSPSTGSGTPRVTSPTHPLSQMNHPPLPDPLGRPDEDSSSSSSSCSS 98

>VIE3_HCMVT (P06434) 30 kDa immediate-early protein 2 (IE2)|
          Length = 280

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 23  SLPXHSSSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDARS 163
           S P   S   +  S TH L  MN PP+   L RP+   ++ +    S
Sbjct: 52  SSPSTGSGTPRVTSPTHPLSQMNHPPLPDPLGRPDEDSSSSSSSCSS 98

>VIE2_HCMVA (P19893) 45 kDa immediate-early protein 2 (IE2) (UL122 protein)|
          Length = 580

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 23  SLPXHSSSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDARS 163
           S P   S   +  S TH L  MN PP+   L RP+   ++ +  + S
Sbjct: 221 SSPSTGSGTPRVTSPTHPLSQMNHPPLPDPLGRPDEDSSSSSSSSCS 267

>YCCS_ECOLI (P75870) Inner membrane protein yccS|
          Length = 717

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 18/73 (24%)
 Frame = +3

Query: 108 NNSSDPNLGRLPELR--------------THEVSIGRHRDVDGGPQLGAYLDGAV----D 233
           N SS+PN+   P++R              ++  ++G HR+    P++ A+LD AV    D
Sbjct: 591 NMSSEPNV--TPQIREAAFRLLCLNHTFTSYISALGAHREQLTNPEILAFLDDAVCYVDD 648

Query: 234 GVRHEVADEVLVD 272
            + H+ ADE  V+
Sbjct: 649 ALHHQPADEERVN 661

>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 96  HPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGP 200
           HP+ +  SDP L R P L  H  + G     D GP
Sbjct: 862 HPTGSRLSDPRLSRDPRLSRHAETSGGSGPGDSGP 896

>CNTFR_HUMAN (P26992) Ciliary neurotrophic factor receptor alpha precursor|
           (CNTFR alpha)
          Length = 372

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 11  TGWLSLPXHSSSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDA 157
           T W   P H +++ Q A  T +  S   PP   ++  P    + G P A
Sbjct: 300 TPWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSA 348

>FIT3_YEAST (Q08907) Facilitator of iron transport 3 precursor|
          Length = 204

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/74 (22%), Positives = 38/74 (51%)
 Frame = +1

Query: 73  YITVHELSTHQKTTLQTRI*ADCRSSGRTKSASAVTEMSTVGLSSAHTSMAPWTGSDMKL 252
           ++   E S++  +   T   ++  +S  + +A+   E S+   SS+   ++ +TG+   +
Sbjct: 128 FVWTGEGSSNTWSPSSTSTSSEAATSSASTTATTTAETSSSATSSSTAELSSYTGAADAI 187

Query: 253 LMRSWLMGASLSTV 294
              + LMGA+L+ V
Sbjct: 188 TAGTGLMGAALAAV 201

>TRM61_YEAST (P46959) tRNA (adenine-N(1)-)-methyltransferase catalytic subunit|
           TRM61 (EC 2.1.1.36) (tRNA(m1A58)-methyltransferase
           subunit TRM61) (tRNA(m1A58)MTase subunit TRM61) (General
           control nonderepressible protein 14) (Protein GCD14)
          Length = 383

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 2   PTPTGW-LSLPXHSSSQVQTASRTHTLQSMNCPP 100
           PTP  W LSLP H +  V T   ++ +Q +NC P
Sbjct: 78  PTPELWTLSLP-HRTQIVYTPDSSYIMQRLNCSP 110

>UBP2_HUMAN (O75604) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 2)
           (Ubiquitin-specific-processing protease 2)
           (Deubiquitinating enzyme 2) (41 kDa ubiquitin-specific
           protease)
          Length = 605

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +1

Query: 52  SNS*SHAYITVHELSTHQKTTLQTRI*ADCRSSG----RTKSASAVTEMST 192
           S + +HA   ++ +S H  TT+     A CRS G     T + S+VT MS+
Sbjct: 533 SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSS 583

>SYS_COREF (Q8FLY5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 419

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +3

Query: 174 RHRDVDGGPQLGAYLDGAVDGVRHEVA---DEVLVDGRILVHRHKR-LLGQDV 320
           R+RD +G PQ+ A L+G +   R  VA   +    DG ++V    R  +G+DV
Sbjct: 362 RYRDENGKPQIAATLNGTLATTRWLVAILENNQQADGSVIVPEALRPFVGKDV 414

>FIT1_YEAST (Q04433) Facilitator of iron transport 1 precursor|
          Length = 528

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = +1

Query: 145 SSGRTKSASAVTEMSTV-------GLSSAHTSMAPWTGSDMKLLMRSWLMGASLSTV 294
           SS  TK  S++T + T        G SS    +  +TG+   +   + LMGA+L+ V
Sbjct: 469 SSASTKMVSSITRVQTTTAGIFTNGKSSTTPQIVNYTGAADSIAAGTGLMGAALAAV 525

>SYS_CORGL (Q8NLP6) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 422

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +3

Query: 174 RHRDVDGGPQLGAYLDGAVDGVRHEVA---DEVLVDGRILVHRHKR-LLGQDV 320
           R+RD +G PQ+ A L+G +   R  VA   +    DG ++V    R  +G+DV
Sbjct: 362 RYRDENGKPQIAATLNGTLATTRWLVAILENNQQADGSVVVPEALRPFVGKDV 414

>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7|
          Length = 1303

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 96  HPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGP 200
           HP+ +  +DP L R P L  H  + G     D GP
Sbjct: 853 HPTGSRLADPRLSRDPRLTRHVEASGGSGPGDSGP 887

>TNNC_HALRO (P06706) Troponin C, body wall muscle|
          Length = 155

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +3

Query: 135 RLPELRTHEVSIG-RHRDVDG---GPQLGAYLDGAVDGVRHEVADEVLVDG 275
           ++PE    E+S   R  D+DG   G +L A LDG  + V     DE++ DG
Sbjct: 84  KIPEREEKELSEAFRLFDLDGDGIGDELKAALDGTGENVETWEVDEMMADG 134

>GALT4_MOUSE (O08832) Polypeptide N-acetylgalactosaminyltransferase 4 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           4) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 4) (Polypeptide GalNAc
           transferase 4) (GalNAc-T4) (pp-GaNTase 4)
          Length = 578

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = +1

Query: 85  HELSTHQKTTLQTRI*ADCRSSGRTKSASAVTEMSTVGLSSAHTSMAPWTGSDMKLLMRS 264
           H +  H++    +RI    RS        AV++     L +  T M  W G +++L  R 
Sbjct: 287 HSVPKHERDRRTSRI-DPIRSPTMAGGLFAVSKKYFQYLGTYDTGMEVWGGENLELSFRV 345

Query: 265 WLMGASL 285
           W  G  L
Sbjct: 346 WQCGGKL 352

>TRMB_XANC5 (Q3BQ14) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 341

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 147 LRTHEVSIGR---HRDVDGGPQLGAYLDGAVDGVRHEVADEVLVDGRI 281
           +  H   +GR     D DG   +  Y   AV+ + HE+AD  L + RI
Sbjct: 99  IEVHAPGVGRLLNALDEDGSTHVRLYHHDAVEVLEHEIADGALDEVRI 146

>ARVC_HUMAN (O00192) Armadillo repeat protein deleted in velo-cardio-facial|
           syndrome
          Length = 962

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 186 VDGGPQLGAYLDGAVD 233
           +DGGP LG + DGA+D
Sbjct: 149 LDGGPPLGPFADGALD 164

>Y392_MYCLE (Q49736) Hypothetical glycosyl hydrolase ML0392 (EC 3.2.1.-)|
          Length = 792

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 183 DVDGGPQLGAYLDGAVDGVRHEVADEVLVDGRILVHR 293
           +  G P++ A LD  ++ V HE  +     G +L+HR
Sbjct: 180 ETSGDPRVSAILDNPLEAVEHEATER----GGLLMHR 212

>DYHC_DROME (P37276) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4639

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 281 DAPINQDLISNFMSDPVHGAIEV 213
           D P+NQD I  F+SDP   A+ V
Sbjct: 53  DDPVNQDTIRKFLSDPQVQALYV 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,000,286
Number of Sequences: 219361
Number of extensions: 812088
Number of successful extensions: 2648
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2648
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)