Clone Name | rbasd25p04 |
---|---|
Clone Library Name | barley_pub |
>gb|AY103782.1| Zea mays PCO080860 mRNA sequence Length = 2117 Score = 222 bits (112), Expect = 5e-55 Identities = 175/196 (89%) Strand = Plus / Minus Query: 126 aatctaggcagactgccggagctccggacgcacgaagtcagcatcggccgtcaccgagat 185 |||||||| |||||||||||||||||| ||||| ||||| || | ||| | ||| ||||| Sbjct: 1872 aatctaggaagactgccggagctccgggcgcacaaagtcggcgttggcaggcacagagat 1813 Query: 186 gtcgacggtgggcctcagctcggcgcatacctcgatggcgccgtggacggggtccgacat 245 ||||||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||| Sbjct: 1812 gtcgacggtgggcctcagctcggcgcagacctcaatggcaccatggacagggtccgacaa 1753 Query: 246 gaagttgctgatgaggtcctggttgatgggcgcatccttgtccaccgtcacaaacgcctg 305 ||||||||||||||||||||||||||| || || ||||||||||||| |||||| ||||| Sbjct: 1752 gaagttgctgatgaggtcctggttgatcggggcgtccttgtccaccgccacaaaggcctg 1693 Query: 306 ctgggtcaggatgtag 321 ||| |||||||||||| Sbjct: 1692 ctgcgtcaggatgtag 1677
>gb|BT016666.1| Zea mays clone Contig499 mRNA sequence Length = 1992 Score = 214 bits (108), Expect = 1e-52 Identities = 174/196 (88%) Strand = Plus / Minus Query: 126 aatctaggcagactgccggagctccggacgcacgaagtcagcatcggccgtcaccgagat 185 |||||||| |||||||||||||||||| ||||| ||||| || | ||| | ||| ||||| Sbjct: 1780 aatctaggaagactgccggagctccgggcgcacaaagtcggcgttggcaggcacagagat 1721 Query: 186 gtcgacggtgggcctcagctcggcgcatacctcgatggcgccgtggacggggtccgacat 245 ||||||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||| Sbjct: 1720 gtcgacggtgggcctcagctcggcgcagacctcaatggcaccatggacagggtccgacaa 1661 Query: 246 gaagttgctgatgaggtcctggttgatgggcgcatccttgtccaccgtcacaaacgcctg 305 ||||||||||||||||||||||||||| || || ||||||||||||| ||| || ||||| Sbjct: 1660 gaagttgctgatgaggtcctggttgatcggggcgtccttgtccaccgccacgaaggcctg 1601 Query: 306 ctgggtcaggatgtag 321 ||| |||||||||||| Sbjct: 1600 ctgcgtcaggatgtag 1585
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10, complete sequence Length = 187034 Score = 210 bits (106), Expect = 2e-51 Identities = 166/186 (89%) Strand = Plus / Plus Query: 136 gactgccggagctccggacgcacgaagtcagcatcggccgtcaccgagatgtcgacggtg 195 |||||||||||||| || |||||||| || || | ||| | ||| ||||||||||||||| Sbjct: 143341 gactgccggagctctgggcgcacgaaatcggcgttggcaggcacggagatgtcgacggtg 143400 Query: 196 ggcctcagctcggcgcatacctcgatggcgccgtggacggggtccgacatgaagttgctg 255 |||| |||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 143401 ggccgcagctcagcgcacacctcgattgcgccatggacggggtcggacatgaagttgctg 143460 Query: 256 atgaggtcctggttgatgggcgcatccttgtccaccgtcacaaacgcctgctgggtcagg 315 |||||||||||||||||||| |||||||||||||| ||||| || || |||||||||||| Sbjct: 143461 atgaggtcctggttgatgggagcatccttgtccactgtcacgaatgcttgctgggtcagg 143520 Query: 316 atgtag 321 |||||| Sbjct: 143521 atgtag 143526
>dbj|AK061892.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G05, full insert sequence Length = 1153 Score = 210 bits (106), Expect = 2e-51 Identities = 166/186 (89%) Strand = Plus / Minus Query: 136 gactgccggagctccggacgcacgaagtcagcatcggccgtcaccgagatgtcgacggtg 195 |||||||||||||| || |||||||| || || | ||| | ||| ||||||||||||||| Sbjct: 983 gactgccggagctctgggcgcacgaaatcggcgttggcaggcacggagatgtcgacggtg 924 Query: 196 ggcctcagctcggcgcatacctcgatggcgccgtggacggggtccgacatgaagttgctg 255 |||| |||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 923 ggccgcagctcagcgcacacctcgattgcgccatggacggggtcggacatgaagttgctg 864 Query: 256 atgaggtcctggttgatgggcgcatccttgtccaccgtcacaaacgcctgctgggtcagg 315 |||||||||||||||||||| |||||||||||||| ||||| || || |||||||||||| Sbjct: 863 atgaggtcctggttgatgggagcatccttgtccactgtcacgaatgcttgctgggtcagg 804 Query: 316 atgtag 321 |||||| Sbjct: 803 atgtag 798
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 210 bits (106), Expect = 2e-51 Identities = 166/186 (89%) Strand = Plus / Plus Query: 136 gactgccggagctccggacgcacgaagtcagcatcggccgtcaccgagatgtcgacggtg 195 |||||||||||||| || |||||||| || || | ||| | ||| ||||||||||||||| Sbjct: 28359099 gactgccggagctctgggcgcacgaaatcggcgttggcaggcacggagatgtcgacggtg 28359158 Query: 196 ggcctcagctcggcgcatacctcgatggcgccgtggacggggtccgacatgaagttgctg 255 |||| |||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 28359159 ggccgcagctcagcgcacacctcgattgcgccatggacggggtcggacatgaagttgctg 28359218 Query: 256 atgaggtcctggttgatgggcgcatccttgtccaccgtcacaaacgcctgctgggtcagg 315 |||||||||||||||||||| |||||||||||||| ||||| || || |||||||||||| Sbjct: 28359219 atgaggtcctggttgatgggagcatccttgtccactgtcacgaatgcttgctgggtcagg 28359278 Query: 316 atgtag 321 |||||| Sbjct: 28359279 atgtag 28359284
>dbj|AK065295.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N13, full insert sequence Length = 1983 Score = 210 bits (106), Expect = 2e-51 Identities = 166/186 (89%) Strand = Plus / Minus Query: 136 gactgccggagctccggacgcacgaagtcagcatcggccgtcaccgagatgtcgacggtg 195 |||||||||||||| || |||||||| || || | ||| | ||| ||||||||||||||| Sbjct: 1795 gactgccggagctctgggcgcacgaaatcggcgttggcaggcacggagatgtcgacggtg 1736 Query: 196 ggcctcagctcggcgcatacctcgatggcgccgtggacggggtccgacatgaagttgctg 255 |||| |||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 1735 ggccgcagctcagcgcacacctcgattgcgccatggacggggtcggacatgaagttgctg 1676 Query: 256 atgaggtcctggttgatgggcgcatccttgtccaccgtcacaaacgcctgctgggtcagg 315 |||||||||||||||||||| |||||||||||||| ||||| || || |||||||||||| Sbjct: 1675 atgaggtcctggttgatgggagcatccttgtccactgtcacgaatgcttgctgggtcagg 1616 Query: 316 atgtag 321 |||||| Sbjct: 1615 atgtag 1610
>gb|BT009123.1| Triticum aestivum clone wl1n.pk0013.e12:fis, full insert mRNA sequence Length = 1957 Score = 170 bits (86), Expect = 2e-39 Identities = 161/186 (86%) Strand = Plus / Minus Query: 135 agactgccggagctccggacgcacgaagtcagcatcggccgtcaccgagatgtcgacggt 194 |||||| || ||||| ||||||||||| |||||||| || ||||| |||||||| || || Sbjct: 1766 agactgtcgaagctctggacgcacgaaatcagcatcagcggtcactgagatgtcaacagt 1707 Query: 195 gggcctcagctcggcgcatacctcgatggcgccgtggacggggtccgacatgaagttgct 254 ||||||||||| ||||| || |||||||| |||||||| ||||| |||||||||||||| Sbjct: 1706 gggcctcagctgagcgcagacttcgatggcaccgtggacagggtcagacatgaagttgct 1647 Query: 255 gatgaggtcctggttgatgggcgcatccttgtccaccgtcacaaacgcctgctgggtcag 314 ||||||||| |||||||| || || | |||||| || |||||||||||||| ||||||| Sbjct: 1646 gatgaggtcttggttgatcggtgctttcttgtcaacagtcacaaacgcctgttgggtcaa 1587 Query: 315 gatgta 320 |||||| Sbjct: 1586 gatgta 1581
>gb|AY103707.1| Zea mays PCO072121 mRNA sequence Length = 1985 Score = 170 bits (86), Expect = 2e-39 Identities = 161/186 (86%) Strand = Plus / Minus Query: 135 agactgccggagctccggacgcacgaagtcagcatcggccgtcaccgagatgtcgacggt 194 |||||| || ||||| ||||||||||| |||||||| || ||||| |||||||| || || Sbjct: 1777 agactgtcgaagctctggacgcacgaaatcagcatcagcggtcactgagatgtcaacagt 1718 Query: 195 gggcctcagctcggcgcatacctcgatggcgccgtggacggggtccgacatgaagttgct 254 ||||||||||| ||||| || |||||||| |||||||| ||||| |||||||||||||| Sbjct: 1717 gggcctcagctgagcgcagacttcgatggcaccgtggacagggtcagacatgaagttgct 1658 Query: 255 gatgaggtcctggttgatgggcgcatccttgtccaccgtcacaaacgcctgctgggtcag 314 ||||||||| |||||||| || || | |||||| || |||||||||||||| ||||||| Sbjct: 1657 gatgaggtcttggttgatcggtgctttcttgtcaacagtcacaaacgcctgttgggtcaa 1598 Query: 315 gatgta 320 |||||| Sbjct: 1597 gatgta 1592
>gb|BT016378.1| Zea mays clone Contig211 mRNA sequence Length = 1029 Score = 155 bits (78), Expect = 1e-34 Identities = 159/186 (85%) Strand = Plus / Minus Query: 135 agactgccggagctccggacgcacgaagtcagcatcggccgtcaccgagatgtcgacggt 194 |||||| || ||||| || |||||||| ||||||| || ||||| |||||||| || || Sbjct: 817 agactgtcgaagctctgggcgcacgaaatcagcatgagcggtcactgagatgtcaacagt 758 Query: 195 gggcctcagctcggcgcatacctcgatggcgccgtggacggggtccgacatgaagttgct 254 ||||||||||| ||||| || |||||||| |||||||| ||||| |||||||||||||| Sbjct: 757 gggcctcagctgagcgcagacttcgatggcaccgtggacagggtcagacatgaagttgct 698 Query: 255 gatgaggtcctggttgatgggcgcatccttgtccaccgtcacaaacgcctgctgggtcag 314 ||||||||| |||||||| || || | |||||| || |||||||||||||| ||||||| Sbjct: 697 gatgaggtcttggttgatcggtgctttcttgtcaacagtcacaaacgcctgttgggtcaa 638 Query: 315 gatgta 320 |||||| Sbjct: 637 gatgta 632
>emb|Y17796.1|PSY17796 Pisum sativum mRNA for ketol-acid reductoisomerase Length = 2036 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 220 atggcgccgtggacggggtccgacatgaagttgctgatgaggtcctggttgatggg 275 ||||| ||||| || ||||| |||| |||||||||||| ||||||||||||||||| Sbjct: 1658 atggccccgtgcactgggtctgacacgaagttgctgatcaggtcctggttgatggg 1603
>emb|AJ251333.1|PSA251333 Pisum sativum aair gene for acetohydroxy acid isomeroreductase, exons 1-9 Length = 3343 Score = 63.9 bits (32), Expect = 3e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 220 atggcgccgtggacggggtccgacatgaagttgctgatgaggtcctggttgatggg 275 ||||| ||||| || ||||| |||| |||||||||||| ||||||||||||||||| Sbjct: 3013 atggccccgtgcactgggtctgacacgaagttgctgatcaggtcctggttgatggg 2958
>gb|AC135231.23| Medicago truncatula clone mth2-28m10, complete sequence Length = 106771 Score = 60.0 bits (30), Expect = 5e-06 Identities = 81/98 (82%) Strand = Plus / Plus Query: 220 atggcgccgtggacggggtccgacatgaagttgctgatgaggtcctggttgatgggcgca 279 ||||| ||||| || ||||| ||||||||||||||||| | |||||||||||| || || Sbjct: 73387 atggctccgtgcactgggtctgacatgaagttgctgattaagtcctggttgataggagct 73446 Query: 280 tccttgtccaccgtcacaaacgcctgctgggtcaggat 317 | |||||||| | ||| || |||||||| || ||||| Sbjct: 73447 ccattgtccactgccaccaaagcctgctgagttaggat 73484
>ref|NM_192395.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1746 Score = 58.0 bits (29), Expect = 2e-05 Identities = 140/177 (79%) Strand = Plus / Minus Query: 145 agctccggacgcacgaagtcagcatcggccgtcaccgagatgtcgacggtgggcctcagc 204 ||||| |||||||| ||||| ||||| || | ||| || ||||| ||||||||||||| | Sbjct: 1730 agctctggacgcacaaagtctgcatcagcaggcactgaaatgtcaacggtgggcctcaac 1671 Query: 205 tcggcgcatacctcgatggcgccgtggacggggtccgacatgaagttgctgatgaggtcc 264 | || || || || ||||| | |||||||| || || | ||| |||||||||||||| Sbjct: 1670 tgagcacagacttcaatggcactatggacgggatcggagaagaaattgctgatgaggtct 1611 Query: 265 tggttgatgggcgcatccttgtccaccgtcacaaacgcctgctgggtcaggatgtag 321 || || | || |||| |||||| || |||||||| || || ||||||| ||||||| Sbjct: 1610 tgattaactggagcattcttgtcaacagtcacaaaagcttgttgggtcaagatgtag 1554
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 58.0 bits (29), Expect = 2e-05 Identities = 140/177 (79%) Strand = Plus / Minus Query: 145 agctccggacgcacgaagtcagcatcggccgtcaccgagatgtcgacggtgggcctcagc 204 ||||| |||||||| ||||| ||||| || | ||| || ||||| ||||||||||||| | Sbjct: 26389122 agctctggacgcacaaagtctgcatcagcaggcactgaaatgtcaacggtgggcctcaac 26389063 Query: 205 tcggcgcatacctcgatggcgccgtggacggggtccgacatgaagttgctgatgaggtcc 264 | || || || || ||||| | |||||||| || || | ||| |||||||||||||| Sbjct: 26389062 tgagcacagacttcaatggcactatggacgggatcggagaagaaattgctgatgaggtct 26389003 Query: 265 tggttgatgggcgcatccttgtccaccgtcacaaacgcctgctgggtcaggatgtag 321 || || | || |||| |||||| || |||||||| || || ||||||| ||||||| Sbjct: 26389002 tgattaactggagcattcttgtcaacagtcacaaaagcttgttgggtcaagatgtag 26388946
>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032K15 Length = 126195 Score = 58.0 bits (29), Expect = 2e-05 Identities = 140/177 (79%) Strand = Plus / Minus Query: 145 agctccggacgcacgaagtcagcatcggccgtcaccgagatgtcgacggtgggcctcagc 204 ||||| |||||||| ||||| ||||| || | ||| || ||||| ||||||||||||| | Sbjct: 62987 agctctggacgcacaaagtctgcatcagcaggcactgaaatgtcaacggtgggcctcaac 62928 Query: 205 tcggcgcatacctcgatggcgccgtggacggggtccgacatgaagttgctgatgaggtcc 264 | || || || || ||||| | |||||||| || || | ||| |||||||||||||| Sbjct: 62927 tgagcacagacttcaatggcactatggacgggatcggagaagaaattgctgatgaggtct 62868 Query: 265 tggttgatgggcgcatccttgtccaccgtcacaaacgcctgctgggtcaggatgtag 321 || || | || |||| |||||| || |||||||| || || ||||||| ||||||| Sbjct: 62867 tgattaactggagcattcttgtcaacagtcacaaaagcttgttgggtcaagatgtag 62811
>dbj|AK072075.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013115K02, full insert sequence Length = 1917 Score = 58.0 bits (29), Expect = 2e-05 Identities = 140/177 (79%) Strand = Plus / Minus Query: 145 agctccggacgcacgaagtcagcatcggccgtcaccgagatgtcgacggtgggcctcagc 204 ||||| |||||||| ||||| ||||| || | ||| || ||||| ||||||||||||| | Sbjct: 1681 agctctggacgcacaaagtctgcatcagcaggcactgaaatgtcaacggtgggcctcaac 1622 Query: 205 tcggcgcatacctcgatggcgccgtggacggggtccgacatgaagttgctgatgaggtcc 264 | || || || || ||||| | |||||||| || || | ||| |||||||||||||| Sbjct: 1621 tgagcacagacttcaatggcactatggacgggatcggagaagaaattgctgatgaggtct 1562 Query: 265 tggttgatgggcgcatccttgtccaccgtcacaaacgcctgctgggtcaggatgtag 321 || || | || |||| |||||| || |||||||| || || ||||||| ||||||| Sbjct: 1561 tgattaactggagcattcttgtcaacagtcacaaaagcttgttgggtcaagatgtag 1505
>gb|DQ448854.1| Theobroma cacao putative ketol acid reductoisomerase precursor-like protein, mRNA, partial sequence Length = 258 Score = 42.1 bits (21), Expect = 1.1 Identities = 47/56 (83%) Strand = Plus / Minus Query: 220 atggcgccgtggacggggtccgacatgaagttgctgatgaggtcctggttgatggg 275 ||||| ||||| || ||||| |||| |||||||||||| | || ||||||||||| Sbjct: 169 atggcaccgtgcaccgggtctgacaggaagttgctgatcngatcttggttgatggg 114
>gb|AC136921.8| Mus musculus chromosome 17, clone RP23-210D4, complete sequence Length = 244237 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 gaagttgctgatgaggtcctg 266 ||||||||||||||||||||| Sbjct: 46822 gaagttgctgatgaggtcctg 46842
>gb|AC129095.12| Mus musculus strain C57BL/6J clone rp23-360g16 map 17, complete sequence Length = 209946 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 gaagttgctgatgaggtcctg 266 ||||||||||||||||||||| Sbjct: 107699 gaagttgctgatgaggtcctg 107719
>dbj|AK035823.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630008E23 product:mitogen activated protein kinase kinase kinase 4, full insert sequence Length = 3816 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 gaagttgctgatgaggtcctg 266 ||||||||||||||||||||| Sbjct: 2783 gaagttgctgatgaggtcctg 2803
>emb|BX119963.5| Zebrafish DNA sequence from clone DKEY-6A5 in linkage group 4, complete sequence Length = 229125 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 34 acacagcagctcacaggttcaaaca 58 ||||||||||||||||||| ||||| Sbjct: 144182 acacagcagctcacaggtttaaaca 144158
>gb|AC087901.20| Mus musculus strain C57BL/6J chromosome 17 clone rp23-22l23, complete sequence Length = 214372 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 gaagttgctgatgaggtcctg 266 ||||||||||||||||||||| Sbjct: 151591 gaagttgctgatgaggtcctg 151611
>ref|XM_789042.1| PREDICTED: Strongylocentrotus purpuratus similar to Forkhead box protein F1 (Forkhead-related protein FKHL5) (Forkhead-related transcription factor 1) (FREAC-1) (Forkhead-related activator-1) (LOC589400), mRNA Length = 1248 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 catgaagttgctgatgaggt 262 |||||||||||||||||||| Sbjct: 206 catgaagttgctgatgaggt 187
>gb|AY007310.1| Coturnix coturnix target of Jun 3 (TOJ3) mRNA, complete cds Length = 1772 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 tgatgaggtcctggttgatg 273 |||||||||||||||||||| Sbjct: 1575 tgatgaggtcctggttgatg 1556
>gb|AC123917.25| Mus musculus chromosome 15, clone RP23-281P5, complete sequence Length = 184959 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 acacagcagctcacaggttcaaac 57 |||||||||| ||||||||||||| Sbjct: 108353 acacagcagcacacaggttcaaac 108376 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,047,098 Number of Sequences: 3902068 Number of extensions: 2047098 Number of successful extensions: 32462 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32412 Number of HSP's gapped (non-prelim): 46 length of query: 321 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 299 effective length of database: 17,147,199,772 effective search space: 5127012731828 effective search space used: 5127012731828 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)