ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25p03 |
|---|---|
| Clone Library Name | barley_pub |
>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 591 Score = 134 bits (338), Expect(2) = 2e-62 Identities = 66/76 (86%), Positives = 69/76 (90%) Frame = -1 Query: 369 ARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDIS 190 ARLGSRKWAPRFDYILTQQA V VD A IN+DLISNF SDPVHGAIEVCA+LRPTVDIS Sbjct: 515 ARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVDIS 574 Query: 189 VTADADFVRPELRQSA 142 V ADADFVRPELRQS+ Sbjct: 575 VPADADFVRPELRQSS 590 Score = 124 bits (311), Expect(2) = 2e-62 Identities = 60/66 (90%), Positives = 63/66 (95%) Frame = -3 Query: 556 PLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCS 377 PL+PFTAGVYVALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCS Sbjct: 453 PLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCS 512 Query: 376 TTGPAG 359 TT G Sbjct: 513 TTARLG 518
>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 581 Score = 133 bits (335), Expect(2) = 2e-61 Identities = 65/74 (87%), Positives = 68/74 (91%) Frame = -1 Query: 369 ARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDIS 190 ARLGSRKWAPRFDYILTQQA V VD APINQDLISNF+SDPVHGAI+VCAELRPT+DIS Sbjct: 505 ARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLDIS 564 Query: 189 VTADADFVRPELRQ 148 V A ADFVRPELRQ Sbjct: 565 VPAAADFVRPELRQ 578 Score = 122 bits (306), Expect(2) = 2e-61 Identities = 59/66 (89%), Positives = 63/66 (95%) Frame = -3 Query: 556 PLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCS 377 PL+PFTAGV+VA+MMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCS Sbjct: 443 PLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCS 502 Query: 376 TTGPAG 359 TT G Sbjct: 503 TTARLG 508
>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 595 Score = 132 bits (331), Expect(2) = 3e-61 Identities = 64/75 (85%), Positives = 69/75 (92%) Frame = -1 Query: 369 ARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDIS 190 ARLGSRKWAPRFDYIL+QQA V VD APINQDLISNF+SDPVH AI VCA+LRP+VDIS Sbjct: 521 ARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDIS 580 Query: 189 VTADADFVRPELRQS 145 VTADADFVRPELRQ+ Sbjct: 581 VTADADFVRPELRQA 595 Score = 123 bits (308), Expect(2) = 3e-61 Identities = 59/66 (89%), Positives = 63/66 (95%) Frame = -3 Query: 556 PLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCS 377 PL+PFTAGVYVALMMAQIE+LRKKGHSYSEIINESVIE+VDSLNPFMHARGV+FMVDNCS Sbjct: 459 PLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCS 518 Query: 376 TTGPAG 359 TT G Sbjct: 519 TTARLG 524
>ILV5_NEUCR (P38674) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 402 Score = 55.1 bits (131), Expect = 1e-07 Identities = 27/54 (50%), Positives = 36/54 (66%) Frame = -3 Query: 520 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTGPAG 359 + +AQ EVLR++GHS SE NE+V E+ SL P + A G+ +M D CSTT G Sbjct: 276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRG 329
>ILV5_YEAST (P06168) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 395 Score = 51.2 bits (121), Expect = 2e-06 Identities = 25/54 (46%), Positives = 34/54 (62%) Frame = -3 Query: 520 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTGPAG 359 + +AQ +VLR+ GHS SE NE+V E+ SL P + G+ +M D CSTT G Sbjct: 270 MFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRG 323
>ILV5_SCHPO (P78827) Probable ketol-acid reductoisomerase, mitochondrial| precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 404 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/54 (44%), Positives = 34/54 (62%) Frame = -3 Query: 520 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTGPAG 359 L +AQ +VLR++GHS +E NE+V E+ SL P + G+ +M CSTT G Sbjct: 277 LFLAQYQVLRERGHSPAEAFNETVEEATQSLYPLIGKYGLDYMFAACSTTARRG 330
>SYS_COREF (Q8FLY5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 419 Score = 30.8 bits (68), Expect = 2.7 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = +1 Query: 184 RHRDVDGGPQLGADLDGAVDGVRHEVA---DEVLVDGRILVHRHKR-LLGQDVVE 336 R+RD +G PQ+ A L+G + R VA + DG ++V R +G+DV+E Sbjct: 362 RYRDENGKPQIAATLNGTLATTRWLVAILENNQQADGSVIVPEALRPFVGKDVLE 416
>ICAA_STAAW (Q8NUI7) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 336 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 229 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAU (Q9RQP9) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 336 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 229 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAS (Q6G608) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 336 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 229 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAR (Q6GDD8) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 336 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 229 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAN (Q7A351) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 336 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 229 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAM (Q99QX3) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 336 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 229 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAC (Q5HCN1) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 336 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 229 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7| Length = 1303 Score = 27.7 bits (60), Expect(2) = 4.3 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +1 Query: 106 HPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGP 210 HP+ + +DP L R P L H + G D GP Sbjct: 853 HPTGSRLADPRLSRDPRLTRHVEASGGSGPGDSGP 887 Score = 20.8 bits (42), Expect(2) = 4.3 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 300 PSQTPAGSGCSRSGAPTSSTPAGP 371 P+ P GS S P+SS +GP Sbjct: 897 PTSKPEGSLHSSPVGPSSSKGSGP 920
>UBIG_BARQU (Q6G0I1) 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)| (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase) (DHHB methyltransferase) Length = 247 Score = 29.3 bits (64), Expect = 7.8 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 7/91 (7%) Frame = -3 Query: 553 LHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHA-------RGVAF 395 LH + + + E L KG + I+N V+E V +N F+ A +GV F Sbjct: 104 LHATQSDLSIDYRTTIAEALADKGEKFDIILNMEVVEHVADVNLFIAATAKMLKSQGVMF 163 Query: 394 MVDNCSTTGPAGVEEVGAPLRLHPDPAGVCD 302 + T G+ VGA L P G D Sbjct: 164 VSTLNRTWKAWGLAIVGAEYILRWLPKGTHD 194
>FIT3_YEAST (Q08907) Facilitator of iron transport 3 precursor| Length = 204 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/74 (22%), Positives = 38/74 (51%) Frame = +2 Query: 83 YITVHELSTHQKTTLQTRI*ADCRSSGRTKSASAVTEMSTVGLSSAQTSMAPWTGSDMKL 262 ++ E S++ + T ++ +S + +A+ E S+ SS+ ++ +TG+ + Sbjct: 128 FVWTGEGSSNTWSPSSTSTSSEAATSSASTTATTTAETSSSATSSSTAELSSYTGAADAI 187 Query: 263 LMRSWLMGASLSTV 304 + LMGA+L+ V Sbjct: 188 TAGTGLMGAALAAV 201
>PCX_DROME (P18490) Protein pecanex| Length = 3433 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = +3 Query: 297 PPSQTPAGSGCSRSGAPTSS-TPAGPVVEQLSTMKATPRACMNG 425 PP+Q PA +G + S T+ P PV + K+TP +G Sbjct: 2369 PPAQAPAAAGGASSAPATAGVAPPAPVTPAHNDSKSTPNLSAHG 2412
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +1 Query: 106 HPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGP 210 HP+ + SDP L R P L H + G D GP Sbjct: 862 HPTGSRLSDPRLSRDPRLSRHAETSGGSGPGDSGP 896
>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 1008 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +3 Query: 291 PCPPSQTPAGSGCSRSGAPTSSTPAGPVVEQLSTMKATP 407 P PPS+ AG S A T S GP+ Q + A P Sbjct: 849 PSPPSRRDAGLQVSLGAAETRSVATGPMTPQAAAPPAFP 887
>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 932 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +3 Query: 291 PCPPSQTPAGSGCSRSGAPTSSTPAGPVVEQLSTMKATP 407 P PPS+ AG S A T S GP+ Q + A P Sbjct: 767 PRPPSRRDAGLQVSLGAAETRSVATGPMTPQAAAPPAVP 805
>TLE2_HUMAN (Q04725) Transducin-like enhancer protein 2 (ESG2)| Length = 743 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/52 (32%), Positives = 22/52 (42%) Frame = +3 Query: 300 PSQTPAGSGCSRSGAPTSSTPAGPVVEQLSTMKATPRACMNGFSESTDSITL 455 P+ TPA C S +STP L + A P + STDS+ L Sbjct: 295 PASTPASKSCDSSPPQDASTPGPSSASHLCQLAAKP-------APSTDSVAL 339
>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein| (Dystrophia myotonica-containing WD repeat motif protein) (DMR-N9 protein) Length = 650 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/45 (37%), Positives = 20/45 (44%) Frame = +3 Query: 291 PCPPSQTPAGSGCSRSGAPTSSTPAGPVVEQLSTMKATPRACMNG 425 P P TP SG SR+G T AGP+ LS + P G Sbjct: 440 PGTPGATPPASGSSRAG----ETGAGPLPRSLSRSNSLPHPAGGG 480 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,501,524 Number of Sequences: 219361 Number of extensions: 1565520 Number of successful extensions: 6333 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5836 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6324 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
