ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25p02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY483152.1| Hordeum vulgare putative cellulose synthase catal... 323 1e-85
2emb|BX927082.9| Zebrafish DNA sequence from clone DKEY-182O15 in... 50 0.002
3gb|U40427.1| Caenorhabditis elegans cosmid F43C9, complete sequence 44 0.15
4gb|AC110195.14| Mus musculus chromosome 3, clone RP24-291L17, co... 40 2.3
5gb|AC161506.4| Mus musculus chromosome 3, clone RP24-210J6, comp... 40 2.3
6gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 2.3
7emb|AL805972.11| Mouse DNA sequence from clone RP23-211P15 on ch... 40 2.3
8gb|U20162.1|YSCL9931 Saccharomyces cerevisiae chromosome XII cos... 40 2.3
9gb|BC059201.1| Danio rerio WW domain containing E3 ubiquitin pro... 38 9.0
10ref|NM_001001943.1| Danio rerio WW domain containing E3 ubiquiti... 38 9.0
11gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chr... 38 9.0
12gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.0
13gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.0
14gb|AC118249.11| Mus musculus chromosome 19, clone RP23-397G23, c... 38 9.0
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 9.0
16gb|AC116420.8| Mus musculus chromosome 1, clone RP24-141B16, com... 38 9.0
17gb|AC102350.14| Mus musculus chromosome 9, clone RP23-323P3, com... 38 9.0
18gb|AC147101.2| Mus musculus BAC clone RP23-455H16 from chromosom... 38 9.0
19gb|AC132582.3| Mus musculus BAC clone RP24-319N10 from chromosom... 38 9.0
20gb|AC124760.4| Mus musculus BAC clone RP23-133I8 from chromosome... 38 9.0
21gb|AC023483.5| Homo sapiens chromosome 3 clone RP11-453A3 map 3p... 38 9.0
22gb|AC034191.6| Homo sapiens chromosome 3 clone RP11-344L9 map 3p... 38 9.0
23gb|AC123955.5| Mus musculus BAC clone RP23-274C16 from 1, comple... 38 9.0
24gb|AC113511.7| Mus musculus chromosome 1, clone RP23-378O19, com... 38 9.0
25gb|AC100491.9| Mus musculus chromosome 9, clone RP23-142M14, com... 38 9.0
26gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare str... 38 9.0
27gb|AC159224.6| Mus musculus chromosome 8, clone RP24-180O7, comp... 38 9.0
28emb|AL390252.9| Human DNA sequence from clone RP11-297O4 on chro... 38 9.0
29gb|AC183530.3| Pan troglodytes BAC clone CH251-653K11 from chrom... 38 9.0
30gb|AC009811.14| Homo sapiens chromosome 3, clone RP11-491K7, com... 38 9.0
31dbj|AK153981.1| Mus musculus 2 days neonate thymus thymic cells ... 38 9.0
32gb|AC106825.2| Homo sapiens chromosome 5 clone RP11-83M24, compl... 38 9.0
33dbj|AK169770.1| Mus musculus 2 days neonate thymus thymic cells ... 38 9.0
34gb|AC027654.3| Mus musculus strain C57BL6/J chromosome 6 clone R... 38 9.0
35emb|BX649559.12| Zebrafish DNA sequence from clone DKEY-33C3 in ... 38 9.0
36gb|AC162805.2| Mus musculus BAC clone RP23-109O16 from chromosom... 38 9.0
37ref|XM_572158.1| Cryptococcus neoformans var. neoformans JEC21 c... 38 9.0
38gb|AC034245.5| Homo sapiens chromosome 5 clone RP11-155L15, comp... 38 9.0
39emb|AJ304606.1|LSE304606 Lepilemur septentrionalis mitochondrial... 38 9.0
40gb|AC010241.5| Homo sapiens chromosome 5 clone CTC-355H1, comple... 38 9.0
41dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.0
42dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.0
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.0
44dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.0
45gb|AC010122.7|AC010122 Drosophila melanogaster, chromosome 3R, r... 38 9.0
46gb|AC133107.2| Homo sapiens BAC clone RP11-640O10 from 2, comple... 38 9.0
47gb|AC138965.2| Homo sapiens chromosome 5 clone RP11-91H12, compl... 38 9.0
48gb|AC157484.2| Pan troglodytes BAC clone CH251-301F2 from chromo... 38 9.0
49gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complet... 38 9.0
50gb|AC023881.6| Homo sapiens BAC clone RP11-108C2 from 2, complet... 38 9.0
51gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.0
52dbj|AP004733.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.0
53dbj|AP006050.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.0
54dbj|AP004791.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.0
55dbj|AP007205.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.0
56gb|AC158663.2| Mus musculus BAC RP23-16J8 (Roswell Park Cancer ... 38 9.0
57emb|BX276083.4| Zebrafish DNA sequence from clone CH211-165N1 in... 38 9.0
58dbj|AP005743.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.0
59dbj|AP000381.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 38 9.0
60dbj|AK099999.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.0
61emb|AL512885.4| Human DNA sequence from clone RP11-183N22 on chr... 38 9.0
62gb|AC006414.6|AC006414 Drosophila melanogaster, chromosome 3R, r... 38 9.0
63gb|AE003710.2| Drosophila melanogaster chromosome 3R, section 48... 38 9.0
64emb|AL929040.12| Zebrafish DNA sequence from clone CH211-284M7 i... 38 9.0
65emb|CR388223.15| Zebrafish DNA sequence from clone DKEY-100N19, ... 38 9.0
66gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 38 9.0 
>gb|AY483152.1| Hordeum vulgare putative cellulose synthase catalytic subunit (CesA2)
            mRNA, complete cds
          Length = 3907

 Score =  323 bits (163), Expect = 1e-85
 Identities = 165/166 (99%)
 Strand = Plus / Minus

                                                                        
Query: 18   cgagtttgtacatacataataatacatccttcgggcaatagcatacagacgacgacagct 77
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3812 cgagtttgtacatacataataatacatccttcgggcaatagcatacagacgacgacagct 3753

                                                                        
Query: 78   ctcagtttcggctcacttacatacattnttatcctctccatttaaatcaaggtcaacaaa 137
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3752 ctcagtttcggctcacttacatacatttttatcctctccatttaaatcaaggtcaacaaa 3693

                                                          
Query: 138  taaagaattgctggctggctggacaatgaaacaacactggaactga 183
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3692 taaagaattgctggctggctggacaatgaaacaacactggaactga 3647
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>emb|BX927082.9| Zebrafish DNA sequence from clone DKEY-182O15 in linkage group 13,
             complete sequence
          Length = 157140

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 153   tggctggacaatgaaacaacactgg 177
             |||||||||||||||||||||||||
Sbjct: 68862 tggctggacaatgaaacaacactgg 68886
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>gb|U40427.1| Caenorhabditis elegans cosmid F43C9, complete sequence
          Length = 34037

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 23    ttgtacatacataataatacat 44
             ||||||||||||||||||||||
Sbjct: 13831 ttgtacatacataataatacat 13810
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>gb|AC110195.14| Mus musculus chromosome 3, clone RP24-291L17, complete sequence
          Length = 171669

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tttgtacatacataataata 41
             ||||||||||||||||||||
Sbjct: 66014 tttgtacatacataataata 66033
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>gb|AC161506.4| Mus musculus chromosome 3, clone RP24-210J6, complete sequence
          Length = 175241

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   tttgtacatacataataata 41
            ||||||||||||||||||||
Sbjct: 7500 tttgtacatacataataata 7481
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 18      cgagtttgtacatacataat 37
               ||||||||||||||||||||
Sbjct: 2174052 cgagtttgtacatacataat 2174071
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>emb|AL805972.11| Mouse DNA sequence from clone RP23-211P15 on chromosome 4, complete
              sequence
          Length = 223059

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    gctggctggctggacaatga 166
              ||||||||||||||||||||
Sbjct: 152991 gctggctggctggacaatga 152972
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>gb|U20162.1|YSCL9931 Saccharomyces cerevisiae chromosome XII cosmid 9931
          Length = 28149

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 123   atcaaggtcaacaaataaagaatt 146
             ||||||||||||||||| ||||||
Sbjct: 22442 atcaaggtcaacaaatatagaatt 22419
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>gb|BC059201.1| Danio rerio WW domain containing E3 ubiquitin protein ligase 1, mRNA
            (cDNA clone MGC:66401 IMAGE:5915182), complete cds
          Length = 4418

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 144  attgctggctggctggaca 162
            |||||||||||||||||||
Sbjct: 2395 attgctggctggctggaca 2377
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>ref|NM_001001943.1| Danio rerio WW domain containing E3 ubiquitin protein ligase 1
            (wwp1), mRNA
          Length = 4418

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 144  attgctggctggctggaca 162
            |||||||||||||||||||
Sbjct: 2395 attgctggctggctggaca 2377
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>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
               sequence
          Length = 1347793

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                     
Query: 14      aatncgagtttgtacatacata 35
               ||| ||||||||||||||||||
Sbjct: 1152974 aatccgagtttgtacatacata 1152953
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>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09,
              complete sequence
          Length = 167318

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 72     acagctctcagtttcggct 90
              |||||||||||||||||||
Sbjct: 156172 acagctctcagtttcggct 156154
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>gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_E12,
             complete sequence
          Length = 121293

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 72    acagctctcagtttcggct 90
             |||||||||||||||||||
Sbjct: 26967 acagctctcagtttcggct 26949
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>gb|AC118249.11| Mus musculus chromosome 19, clone RP23-397G23, complete sequence
          Length = 224129

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 141   agaattgctggctggctgg 159
             |||||||||||||||||||
Sbjct: 91133 agaattgctggctggctgg 91151
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 133      acaaataaagaattgctgg 151
                |||||||||||||||||||
Sbjct: 13077259 acaaataaagaattgctgg 13077277
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>gb|AC116420.8| Mus musculus chromosome 1, clone RP24-141B16, complete sequence
          Length = 191497

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     tacatacataataatacat 44
              |||||||||||||||||||
Sbjct: 187087 tacatacataataatacat 187105
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>gb|AC102350.14| Mus musculus chromosome 9, clone RP23-323P3, complete sequence
          Length = 211216

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 22     tttgtacatacataataat 40
              |||||||||||||||||||
Sbjct: 138820 tttgtacatacataataat 138802
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>gb|AC147101.2| Mus musculus BAC clone RP23-455H16 from chromosome 12, complete
             sequence
          Length = 168258

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 131   caacaaataaagaattgct 149
             |||||||||||||||||||
Sbjct: 61289 caacaaataaagaattgct 61307
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>gb|AC132582.3| Mus musculus BAC clone RP24-319N10 from chromosome 12, complete
             sequence
          Length = 159310

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 131   caacaaataaagaattgct 149
             |||||||||||||||||||
Sbjct: 92821 caacaaataaagaattgct 92839
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>gb|AC124760.4| Mus musculus BAC clone RP23-133I8 from chromosome 1, complete sequence
          Length = 230067

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    tacatacataataatacat 44
             |||||||||||||||||||
Sbjct: 48814 tacatacataataatacat 48796
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>gb|AC023483.5| Homo sapiens chromosome 3 clone RP11-453A3 map 3p, complete sequence
          Length = 171051

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     tacatacataataatacat 44
              |||||||||||||||||||
Sbjct: 170186 tacatacataataatacat 170204
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>gb|AC034191.6| Homo sapiens chromosome 3 clone RP11-344L9 map 3p, complete sequence
          Length = 172221

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     tacatacataataatacat 44
              |||||||||||||||||||
Sbjct: 105975 tacatacataataatacat 105993
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>gb|AC123955.5| Mus musculus BAC clone RP23-274C16 from 1, complete sequence
          Length = 189764

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 26   tacatacataataatacat 44
            |||||||||||||||||||
Sbjct: 2513 tacatacataataatacat 2531
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>gb|AC113511.7| Mus musculus chromosome 1, clone RP23-378O19, complete sequence
          Length = 223985

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     tacatacataataatacat 44
              |||||||||||||||||||
Sbjct: 184379 tacatacataataatacat 184361
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>gb|AC100491.9| Mus musculus chromosome 9, clone RP23-142M14, complete sequence
          Length = 222845

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 22     tttgtacatacataataat 40
              |||||||||||||||||||
Sbjct: 182324 tttgtacatacataataat 182342
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>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07,
              from chromosome 3, complete sequence
          Length = 151173

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 133    acaaataaagaattgctgg 151
              |||||||||||||||||||
Sbjct: 149357 acaaataaagaattgctgg 149339
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>gb|AC159224.6| Mus musculus chromosome 8, clone RP24-180O7, complete sequence
          Length = 171002

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 73     cagctctcagtttcggctcactt 95
              |||||||||||||| ||||||||
Sbjct: 103470 cagctctcagtttctgctcactt 103448
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>emb|AL390252.9| Human DNA sequence from clone RP11-297O4 on chromosome 1 Contains the
              CELSR2 gene for cadherin, EGF LAG seven-pass G-type
              receptor 2 (flamingo homolog, Drosophila), the gene for
              differential display and activated by p53 (DDA3), the gene
              for novel protein similar to Myosin-binding protein H
              (MyBP-H) (H-protein) (LOC343263), the SORT1 gene for
              sortilin 1 and the 3' end of the PSMA5 gene for proteasome
              (prosome, macropain) subunit, alpha type, 5, complete
              sequence
          Length = 169241

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 130    tcaacaaataaagaattgc 148
              |||||||||||||||||||
Sbjct: 110621 tcaacaaataaagaattgc 110639
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>gb|AC183530.3| Pan troglodytes BAC clone CH251-653K11 from chromosome 1, complete
             sequence
          Length = 198127

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 130   tcaacaaataaagaattgc 148
             |||||||||||||||||||
Sbjct: 55204 tcaacaaataaagaattgc 55222
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>gb|AC009811.14| Homo sapiens chromosome 3, clone RP11-491K7, complete sequence
          Length = 171083

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 112   tctccatttaaatcaaggt 130
             |||||||||||||||||||
Sbjct: 94031 tctccatttaaatcaaggt 94013
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>dbj|AK153981.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430018J03
           product:hypothetical protein, full insert sequence
          Length = 2923

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 26  tacatacataataatacat 44
           |||||||||||||||||||
Sbjct: 579 tacatacataataatacat 597
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>gb|AC106825.2| Homo sapiens chromosome 5 clone RP11-83M24, complete sequence
          Length = 99304

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    tacatacataataatacat 44
             |||||||||||||||||||
Sbjct: 82425 tacatacataataatacat 82407
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>dbj|AK169770.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430021F19
           product:hypothetical protein, full insert sequence
          Length = 2923

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 26  tacatacataataatacat 44
           |||||||||||||||||||
Sbjct: 579 tacatacataataatacat 597
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>gb|AC027654.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-219K14, complete
             sequence
          Length = 223678

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    tacatacataataatacat 44
             |||||||||||||||||||
Sbjct: 99915 tacatacataataatacat 99897
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>emb|BX649559.12| Zebrafish DNA sequence from clone DKEY-33C3 in linkage group 3, complete
              sequence
          Length = 143056

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 144    attgctggctggctggaca 162
              |||||||||||||||||||
Sbjct: 125386 attgctggctggctggaca 125368
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>gb|AC162805.2| Mus musculus BAC clone RP23-109O16 from chromosome 17, complete sequence
          Length = 183193

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 157    tggacaatgaaacaacactggaactga 183
              |||||||||||| | ||||||||||||
Sbjct: 160105 tggacaatgaaagagcactggaactga 160079
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>ref|XM_572158.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7
          Length = 1578

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 14   aatncgagtttgtacatacata 35
            ||| ||||||||||||||||||
Sbjct: 1541 aatccgagtttgtacatacata 1562
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>gb|AC034245.5| Homo sapiens chromosome 5 clone RP11-155L15, complete sequence
          Length = 158094

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    tttgtacatacataataat 40
             |||||||||||||||||||
Sbjct: 22802 tttgtacatacataataat 22784
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>emb|AJ304606.1|LSE304606 Lepilemur septentrionalis mitochondrial partial D-loop, country
           Madagascar, clone LSA-A75
          Length = 532

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 25  gtacatacataataataca 43
           |||||||||||||||||||
Sbjct: 149 gtacatacataataataca 167
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>gb|AC010241.5| Homo sapiens chromosome 5 clone CTC-355H1, complete sequence
          Length = 126582

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     tacatacataataatacat 44
              |||||||||||||||||||
Sbjct: 108107 tacatacataataatacat 108125
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 140      aagaattgctggctggctggaca 162
                ||||||||| |||||||||||||
Sbjct: 25080832 aagaattgcaggctggctggaca 25080810



 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 145      ttgctggctggctggacaa 163
                |||||||||||||||||||
Sbjct: 10084507 ttgctggctggctggacaa 10084489
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 72       acagctctcagtttcggct 90
                |||||||||||||||||||
Sbjct: 17896218 acagctctcagtttcggct 17896200
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 133      acaaataaagaattgctgg 151
                |||||||||||||||||||
Sbjct: 13074034 acaaataaagaattgctgg 13074052
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 140      aagaattgctggctggctggaca 162
                ||||||||| |||||||||||||
Sbjct: 11990247 aagaattgcaggctggctggaca 11990225
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>gb|AC010122.7|AC010122 Drosophila melanogaster, chromosome 3R, region 89A-89A, BAC clone
             BACR06B08, complete sequence
          Length = 151447

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    agtttgtacatacataata 38
             |||||||||||||||||||
Sbjct: 53201 agtttgtacatacataata 53183
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>gb|AC133107.2| Homo sapiens BAC clone RP11-640O10 from 2, complete sequence
          Length = 120939

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    tacatacataataatacat 44
             |||||||||||||||||||
Sbjct: 21290 tacatacataataatacat 21308
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>gb|AC138965.2| Homo sapiens chromosome 5 clone RP11-91H12, complete sequence
          Length = 170380

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    tacatacataataatacat 44
             |||||||||||||||||||
Sbjct: 71752 tacatacataataatacat 71770
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>gb|AC157484.2| Pan troglodytes BAC clone CH251-301F2 from chromosome unknown, complete
             sequence
          Length = 182330

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    tttgtacatacataataat 40
             |||||||||||||||||||
Sbjct: 22642 tttgtacatacataataat 22660
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>gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complete sequence
          Length = 182776

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 161    caatgaaacaacactggaa 179
              |||||||||||||||||||
Sbjct: 148351 caatgaaacaacactggaa 148369
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>gb|AC023881.6| Homo sapiens BAC clone RP11-108C2 from 2, complete sequence
          Length = 185802

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     tacatacataataatacat 44
              |||||||||||||||||||
Sbjct: 134968 tacatacataataatacat 134986
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>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11,
              complete sequence
          Length = 176637

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 133    acaaataaagaattgctgg 151
              |||||||||||||||||||
Sbjct: 154957 acaaataaagaattgctgg 154975
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>dbj|AP004733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0023I22
          Length = 170029

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 140    aagaattgctggctggctggaca 162
              ||||||||| |||||||||||||
Sbjct: 133165 aagaattgcaggctggctggaca 133143
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>dbj|AP006050.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0021H05
          Length = 159111

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 145    ttgctggctggctggacaa 163
              |||||||||||||||||||
Sbjct: 158072 ttgctggctggctggacaa 158054
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>dbj|AP004791.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0491D10
          Length = 162039

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 145   ttgctggctggctggacaa 163
             |||||||||||||||||||
Sbjct: 50873 ttgctggctggctggacaa 50855
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>dbj|AP007205.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0048L03
          Length = 142377

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 140   aagaattgctggctggctggaca 162
             ||||||||| |||||||||||||
Sbjct: 27018 aagaattgcaggctggctggaca 26996
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>gb|AC158663.2| Mus musculus  BAC RP23-16J8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 216101

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     tacatacataataatacat 44
              |||||||||||||||||||
Sbjct: 216016 tacatacataataatacat 215998
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>emb|BX276083.4| Zebrafish DNA sequence from clone CH211-165N1 in linkage group 17,
             complete sequence
          Length = 133128

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    gtacatacataataataca 43
             |||||||||||||||||||
Sbjct: 93896 gtacatacataataataca 93914
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>dbj|AP005743.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0543C11
          Length = 159075

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 140   aagaattgctggctggctggaca 162
             ||||||||| |||||||||||||
Sbjct: 87525 aagaattgcaggctggctggaca 87503
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>dbj|AP000381.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K17E12
          Length = 63604

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    catacataataatacatcc 46
             |||||||||||||||||||
Sbjct: 27034 catacataataatacatcc 27016
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>dbj|AK099999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134K18, full
            insert sequence
          Length = 3073

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 133  acaaataaagaattgctgg 151
            |||||||||||||||||||
Sbjct: 1672 acaaataaagaattgctgg 1654
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>emb|AL512885.4| Human DNA sequence from clone RP11-183N22 on chromosome 1, complete
              sequence
          Length = 165590

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     tacatacataataatacat 44
              |||||||||||||||||||
Sbjct: 164701 tacatacataataatacat 164683
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>gb|AC006414.6|AC006414 Drosophila melanogaster, chromosome 3R, region 89A1-89A5, BAC clone
              BACR48G17, complete sequence
          Length = 179122

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     agtttgtacatacataata 38
              |||||||||||||||||||
Sbjct: 164214 agtttgtacatacataata 164196
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>gb|AE003710.2| Drosophila melanogaster chromosome 3R, section 48 of 118 of the complete
              sequence
          Length = 224071

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     agtttgtacatacataata 38
              |||||||||||||||||||
Sbjct: 153444 agtttgtacatacataata 153426
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>emb|AL929040.12| Zebrafish DNA sequence from clone CH211-284M7 in linkage group 16,
              complete sequence
          Length = 171330

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     tacataataatacatcctt 48
              |||||||||||||||||||
Sbjct: 168304 tacataataatacatcctt 168322
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>emb|CR388223.15| Zebrafish DNA sequence from clone DKEY-100N19, complete sequence
          Length = 181759

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 19     gagtttgtacatacataat 37
              |||||||||||||||||||
Sbjct: 131343 gagtttgtacatacataat 131325
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 108     atcctctccatttaaatca 126
               |||||||||||||||||||
Sbjct: 2474075 atcctctccatttaaatca 2474057


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,856,343
Number of Sequences: 3902068
Number of extensions: 1856343
Number of successful extensions: 172005
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 171523
Number of HSP's gapped (non-prelim): 482
length of query: 183
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 161
effective length of database: 17,147,199,772
effective search space: 2760699163292
effective search space used: 2760699163292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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