ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26e07 |
|---|---|
| Clone Library Name | barley_pub |
>RBL1B_THIFE (Q07087) Ribulose bisphosphate carboxylase large chain 2 (EC| 4.1.1.39) (RuBisCO large subunit 2) Length = 473 Score = 34.3 bits (77), Expect = 0.32 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Frame = -3 Query: 488 NTSLPNLRIDNSIM------PRQTLDGGNTGGVPSLQDGKIDQQAVGNQLNYSNNDLVGT 327 NT L N DN ++ + LD G+ KI + + G+ L+ + +VG Sbjct: 270 NTGLANWCRDNGMLLHIHRAMHRVLDRNPHHGIHFRVLTKILRLSGGDHLH--SGTVVGK 327 Query: 326 SGLQRELSGGLDDIVVDMFRPDNDTGGIFIDTDWGLV*PVCFHQVPCARFSAFVW 162 RE + G DI+ D F ++ + GIF D DWG + V +P A VW Sbjct: 328 LEGDREATLGWIDIMRDRFIKEDRSRGIFFDQDWGSMPGV----MPVASGGIHVW 378
>RBL_SOVGS (Q673V5) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 472 Score = 33.1 bits (74), Expect = 0.70 Identities = 25/76 (32%), Positives = 38/76 (50%) Frame = -3 Query: 389 KIDQQAVGNQLNYSNNDLVGTSGLQRELSGGLDDIVVDMFRPDNDTGGIFIDTDWGLV*P 210 KI + + G+ L+ + +VG RE + G DI+ D F ++ + GIF D DWG + Sbjct: 308 KILRLSGGDHLH--SGTVVGKLEGDREATLGWIDIMRDSFNKEDRSRGIFFDQDWGSMPG 365 Query: 209 VCFHQVPCARFSAFVW 162 V +P A VW Sbjct: 366 V----LPVASGGIHVW 377
>SFP1_YEAST (P32432) Zinc finger protein SFP1| Length = 683 Score = 32.3 bits (72), Expect = 1.2 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Frame = -3 Query: 578 NQGAAPFTFGNSTNSREAHNSNLAFSNSGINTSLPNLR--IDNSIMPRQTLDGGNTGGVP 405 N A G+ TN+ +AH+SN A +N+ IN NL+ +D++ RQ+ P Sbjct: 265 NMAANTKNAGHKTNTMQAHSSN-ATNNTSINNMHANLQSNMDSNSTIRQSQH-------P 316 Query: 404 SLQDGKIDQQAVGNQLNYSN 345 Q I QQ N +N+++ Sbjct: 317 HHQQNIIQQQLQSNSVNHTS 336
>RBL1_THIDA (Q56259) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 473 Score = 32.0 bits (71), Expect = 1.6 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 6/115 (5%) Frame = -3 Query: 488 NTSLPNLRIDNSIM------PRQTLDGGNTGGVPSLQDGKIDQQAVGNQLNYSNNDLVGT 327 NT L N DN ++ LD G+ KI + + G+ L+ + +VG Sbjct: 270 NTGLANWCRDNGMLLHIHRAMHAVLDRNPHHGIHFRVLTKILRLSGGDHLH--SGTVVGK 327 Query: 326 SGLQRELSGGLDDIVVDMFRPDNDTGGIFIDTDWGLV*PVCFHQVPCARFSAFVW 162 RE + G D++ D F ++ + GIF D DWG + P F P A VW Sbjct: 328 LEGDREATLGWIDMMRDSFVKEDRSRGIFFDQDWGSM-PGVF---PVASGGIHVW 378
>CDGT_BACS2 (P31746) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 703 Score = 31.2 bits (69), Expect = 2.7 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 4/113 (3%) Frame = -3 Query: 557 TFGNSTNSREAHNSNLAFSNSGINTSLPNLRIDNSIMPRQTLDGG----NTGGVPSLQDG 390 TFGNS ++SN + + +NTSLP + + +Q LDG N G + Sbjct: 446 TFGNSIVLTAVNSSNSNQTITNLNTSLPQGNYTDEL--QQRLDGNTITVNANGAVNSFQL 503 Query: 389 KIDQQAVGNQLNYSNNDLVGTSGLQRELSGGLDDIVVDMFRPDNDTGGIFIDT 231 + + AV N S + L+G G +G + + F ++ G + D+ Sbjct: 504 RANSVAVWQVSNPSTSPLIGQVGPMMGKAGNTITVSGEGF--GDERGSVLFDS 554
>ATL3A_ARATH (Q9SRQ8) RING-H2 finger protein ATL3A| Length = 356 Score = 30.8 bits (68), Expect = 3.5 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = -3 Query: 521 NSNLAFSNSGINTS-----LPNLRIDNSIMPRQTLDGGNTGGVPSLQDGKIDQQAVGNQL 357 N + N+ I+T + NL ++NS +T++ G+T P +QD + ++ L Sbjct: 217 NQQIVTENNSISTGDDSVVVVNLDLENSRSRNETVNEGSTPKPPEMQDSRDGEERRSASL 276 Query: 356 NYSNNDLVGTSGLQREL 306 N S +V + + RE+ Sbjct: 277 N-SGGGVVSIADILREI 292
>FLAEY_CAUCR (P15345) Regulatory protein flaEY| Length = 954 Score = 30.8 bits (68), Expect = 3.5 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Frame = -3 Query: 437 TLDGGNTGGVPSLQDGKIDQQAV-GNQL---NYSNNDLVGTSGLQRELSGGLDDIVVDMF 270 TL G T + SL+ G+I + G QL Y+ N+L+ G SGG+D V M Sbjct: 590 TLTAGATRDLGSLKGGEIAGLKIDGGQLYVGGYTANNLMSIGGATTAPSGGMDGFVGRMS 649 Query: 269 RPDNDTGG 246 +DT G Sbjct: 650 LDISDTTG 657
>MT1H_HUMAN (P80294) Metallothionein-1H (MT-1H) (Metallothionein-IH) (MT-IH)| (Metallothionein-0) (MT-0) Length = 61 Score = 30.4 bits (67), Expect = 4.6 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Frame = +2 Query: 437 SALA*SNCQCEGLAK--KC*CLNC*TQGCYCVPLSSLCCFQ 553 S A +C C G K KC C +C C C PL C Q Sbjct: 6 SCEAGGSCACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQ 46
>RAD18_ASPFU (Q4WZJ6) Postreplication repair ubiquitin-protein ligase E3 rad18| (EC 6.-.-.-) Length = 418 Score = 30.4 bits (67), Expect = 4.6 Identities = 21/77 (27%), Positives = 36/77 (46%) Frame = -3 Query: 434 LDGGNTGGVPSLQDGKIDQQAVGNQLNYSNNDLVGTSGLQRELSGGLDDIVVDMFRPDND 255 LDGG G P+ + K+DQ+ + + S ++ + T R + + +VVD D D Sbjct: 108 LDGGYVTGQPAAKKRKVDQE---DGPDASGSEGIRTRSQSRRGNSQAEPVVVDAIEDDQD 164 Query: 254 TGGIFIDTDWGLV*PVC 204 +I D + P+C Sbjct: 165 KE--YIPEDGLVACPIC 179
>OLF8_MOUSE (Q60892) Olfactory receptor 8 (Odorant receptor M64)| Length = 310 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Frame = -1 Query: 385 LISKLLVISSITATMISWGRVG---CKGSSVVVWMTLLLTCSGRITILVAFSSTRTGGWS 215 L+ LL + S ++ + S+ ++ C SSV T TC ++I+ F ST G + Sbjct: 202 LVPVLLAVISFSSILYSYFKIVSSICSISSVQGKYTAFSTCVSHLSIVFLFYSTGLGVYV 261 Query: 214 SQSAFTKSHA 185 S + SH+ Sbjct: 262 SSAVVQSSHS 271
>YM41_YEAST (Q03213) Hypothetical 79.4 kDa protein in ALD2-DDR48 intergenic| region Length = 719 Score = 30.0 bits (66), Expect = 6.0 Identities = 14/53 (26%), Positives = 22/53 (41%) Frame = -3 Query: 629 MQNQVAPLASNTLPMVFNQGAAPFTFGNSTNSREAHNSNLAFSNSGINTSLPN 471 + N P N +P + N P +F N + L SG+NT++ N Sbjct: 462 LDNASFPPNQNVIPPIINNTQQPLSFSQLINQDSTTSELLPSGKSGVNTNIVN 514
>RBL_NITST (Q8VQ84) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 473 Score = 30.0 bits (66), Expect = 6.0 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 6/95 (6%) Frame = -3 Query: 488 NTSLPNLRIDNSIMPR------QTLDGGNTGGVPSLQDGKIDQQAVGNQLNYSNNDLVGT 327 N L N +N ++P LD G+ KI + + G+ L+ +VG Sbjct: 270 NAGLANWCRNNGMLPHVHRAMHAVLDRNPHHGIHFRVLTKILRLSGGDHLH--TGTVVGK 327 Query: 326 SGLQRELSGGLDDIVVDMFRPDNDTGGIFIDTDWG 222 R + G D++ + F P++ + GIF D DWG Sbjct: 328 LEGDRASTLGWIDLLRESFVPEDRSRGIFFDQDWG 362
>PPO2_IPOBA (Q9MB14) Polyphenol oxidase II, chloroplast precursor (EC 1.10.3.1)| (PPO-II) (Catechol oxidase II) Length = 588 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +3 Query: 141 WTNQQQTPHKCGKSRAWDLVKADWLDQPPVRVDENATSIVIR 266 WT QQ GK R D +DWLD + DEN ++ +R Sbjct: 373 WTIWQQLG---GKGRRRDFTDSDWLDATFIFYDENKQAVRVR 411
>EXO84_YEAST (P38261) Exocyst complex component EXO84 (Exocyst complex protein| of 84 kDa) (U1 SNP1-associating protein 3) Length = 753 Score = 29.6 bits (65), Expect = 7.8 Identities = 22/92 (23%), Positives = 36/92 (39%) Frame = -3 Query: 611 PLASNTLPMVFNQGAAPFTFGNSTNSREAHNSNLAFSNSGINTSLPNLRIDNSIMPRQTL 432 P S TLP + N + HN+N A + LP++ N I+P + Sbjct: 50 PATSYTLPTI-NARERSRVATSMQRRLSIHNTNYAPPTLDYSMPLPDM--PNMIVPNDNV 106 Query: 431 DGGNTGGVPSLQDGKIDQQAVGNQLNYSNNDL 336 D + + ++ + + N LN S DL Sbjct: 107 DSSHNNSSFTTENESVSSKGPSNSLNLSTADL 138
>RBL_NITVU (Q59613) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 472 Score = 29.6 bits (65), Expect = 7.8 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Frame = -3 Query: 359 LNYSNNDLVGTSGLQRELSG------GLDDIVVDMFRPDNDTGGIFIDTDWG 222 L S D + T + +L G G D++ + F P++ + GIF D DWG Sbjct: 311 LRLSGGDHLHTGTVVGKLEGDRASTLGWIDLLRESFVPEDRSRGIFFDQDWG 362
>PNT1_DROME (P51022) ETS-like protein pointed, isoform P1 (D-ETS-2)| Length = 623 Score = 29.6 bits (65), Expect = 7.8 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 9/103 (8%) Frame = -3 Query: 623 NQVAPLASNT---LPMVFNQGAAPFTFGNSTNSREAHNSNLAFSNSGINTSLPNLRIDNS 453 N V L+S+T L + + APF N+ +S++ F +SG NTS + RI+NS Sbjct: 186 NLVGALSSSTAASLGLGYFNDMAPFV--GDANAYYT-DSDVNFFSSGYNTSNTHDRINNS 242 Query: 452 IMPRQ------TLDGGNTGGVPSLQDGKIDQQAVGNQLNYSNN 342 P+Q T++G +G S + + AV N +NN Sbjct: 243 TPPQQQQSQQPTVNG--SGSASSNNNNSMLPPAVQQSNNENNN 283
>BZR1_ARATH (Q8S307) BRASSINAZOLE-RESISTANT 1 protein (BIN2 SUBSTRATE 2| protein) Length = 336 Score = 29.6 bits (65), Expect = 7.8 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Frame = -3 Query: 626 QNQVAPLASNTLPMVFNQGAAPFTFGNSTNSREAHNSNLAFS------NSGINTSLPNLR 465 QNQ +PL+S + + +P + + SR N+N++ + N GI +SLP+LR Sbjct: 111 QNQ-SPLSSAFQSPIPSYQVSPSSSSFPSPSRGEPNNNMSSTFFPFLRNGGIPSSLPSLR 169 Query: 464 IDNS 453 I NS Sbjct: 170 ISNS 173
>NSP1_YEAST (P14907) Nucleoporin NSP1 (Nuclear pore protein NSP1)| (Nucleoskeletal-like protein) (p110) Length = 823 Score = 29.6 bits (65), Expect = 7.8 Identities = 20/77 (25%), Positives = 28/77 (36%) Frame = -3 Query: 575 QGAAPFTFGNSTNSREAHNSNLAFSNSGINTSLPNLRIDNSIMPRQTLDGGNTGGVPSLQ 396 Q PF+FG + N+ N N + T +NS P T + N+ P+ Sbjct: 8 QNKTPFSFGTANNNSNTTNQNSSTGAGAFGTGQSTFGFNNS-APNNT-NNANSSITPAFG 65 Query: 395 DGKIDQQAVGNQLNYSN 345 A GN SN Sbjct: 66 SNNTGNTAFGNSNPTSN 82
>AROE_CORGL (Q9X5C9) Shikimate dehydrogenase (EC 1.1.1.25)| Length = 283 Score = 29.6 bits (65), Expect = 7.8 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 9/121 (7%) Frame = -3 Query: 617 VAPLASNTLPMVFNQGAAPFTFGNSTNSREAHNSNLAFSNSGINTSLPNLRIDNSIMPRQ 438 V PL GA ++T HN++++ G+ LPN ++D+ + Q Sbjct: 76 VLPLLDEVSEQATQLGAVNTVVIDATGHTTGHNTDVSGFGRGMEEGLPNAKLDSVV---Q 132 Query: 437 TLDGG---------NTGGVPSLQDGKIDQQAVGNQLNYSNNDLVGTSGLQRELSGGLDDI 285 GG T GV LQ +D + NN VG + + G++D+ Sbjct: 133 VGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINN-AVGREAVVGVDARGIEDV 191 Query: 284 V 282 + Sbjct: 192 I 192
>RBL_NITS1 (Q8VW94) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 473 Score = 29.6 bits (65), Expect = 7.8 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Frame = -3 Query: 359 LNYSNNDLVGTSGLQRELSG------GLDDIVVDMFRPDNDTGGIFIDTDWG 222 L S D + T + +L G G D++ + F P++ + GIF D DWG Sbjct: 311 LRLSGGDHLHTGTVVGKLEGDRASTLGWIDLLRESFVPEDRSRGIFFDQDWG 362
>RBL1_THINE (O85040) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 473 Score = 29.6 bits (65), Expect = 7.8 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Frame = -3 Query: 359 LNYSNNDLVGTSGLQRELSG------GLDDIVVDMFRPDNDTGGIFIDTDWG 222 L S D + T + +L G G D++ + F P++ + GIF D DWG Sbjct: 311 LRLSGGDHLHTGTVVGKLEGDRASTLGWIDLLRESFIPEDRSRGIFFDQDWG 362 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,256,325 Number of Sequences: 219361 Number of extensions: 1896548 Number of successful extensions: 6368 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 6095 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6365 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
