ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB062095.1| Zea mays ZmRR9 mRNA for response regulator 9, co... 96 2e-16
2ref|XM_464340.1| Oryza sativa (japonica cultivar-group), mRNA 86 2e-13
3dbj|AK100530.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 2e-13
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 84 6e-13
5dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic D... 84 6e-13
6gb|AY105903.1| Zea mays PCO136772 mRNA sequence 72 2e-09
7gb|AC131912.6| Mus musculus chromosome 9, clone RP24-164A20, com... 44 0.55
8gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 42 2.2
9gb|AC126959.6| Rattus norvegicus 8 BAC CH230-10P12 (Children's H... 42 2.2
10gb|AE016830.1| Enterococcus faecalis V583, complete genome 42 2.2
11gb|AC183538.4| Pan troglodytes BAC clone CH251-395P17 from chrom... 40 8.6
12ref|XM_959687.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.6
13ref|XM_325043.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.6
14gb|U40238.2| Uncultured crenarchaeote 4B7 40 kb genomic fragment 40 8.6
15ref|XM_950310.1| Theileria annulata strain Ankara hypothetical p... 40 8.6
16emb|Z98950.1|HS507I15 Human DNA sequence from clone RP3-507I15 o... 40 8.6
17emb|AL162500.15| Human DNA sequence from clone RP11-318K19 on ch... 40 8.6
18emb|BX957219.1| Methanococcus maripaludis S2 complete genome; se... 40 8.6
19gb|AC090415.5| Homo sapiens chromosome 18, clone RP11-529J17, co... 40 8.6
20gb|AC083807.17| Homo sapiens 12 BAC RP11-775A14 (Roswell Park Ca... 40 8.6
21gb|AC091691.7| Homo sapiens chromosome 18, clone RP11-47G4, comp... 40 8.6
22gb|AF346498.1|AF346498 Photorhabdus luminescens strain W14 toxin... 40 8.6
23dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
24gb|AC107210.5| Homo sapiens BAC clone RP11-70M19 from 4, complet... 40 8.6
25ref|XM_573858.1| PREDICTED: Rattus norvegicus similar to chromos... 40 8.6
26gb|AC007385.3| Homo sapiens BAC clone RP11-325M10 from 2, comple... 40 8.6
27dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
28dbj|AK120334.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.6
29emb|CR354581.11| Zebrafish DNA sequence from clone CH211-231O17 ... 40 8.6
30emb|CR352257.8| Zebrafish DNA sequence from clone CH211-261B21 i... 40 8.6
31gb|AF047457.1|AF047457 Photorhabdus luminescens insecticidal tox... 40 8.6
32gb|AC091069.2| Homo sapiens chromosome 3 clone RP11-161L3 map 3p... 40 8.6
33dbj|AB028205.1| Porphyra yezoensis gene for vacuolar-ATPase c su... 40 8.6 
>dbj|AB062095.1| Zea mays ZmRR9 mRNA for response regulator 9, complete cds
          Length = 2262

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 119/142 (83%), Gaps = 3/142 (2%)
 Strand = Plus / Minus

                                                                        
Query: 262  tccggcctgaacatgtcaacaacaatgtcatccaaaccaccactgagctccctttgcagc 321
            |||||||| |||||||| || ||||||||||||| ||||||||||||  |||||||||||
Sbjct: 1933 tccggcctaaacatgtccacgacaatgtcatccagaccaccactgagtcccctttgcagc 1874

                                                                        
Query: 322  ccactcgtccccacgagatcattgttgctgtaattgagctgattaccaacagcttgctga 381
            | ||| ||||||| ||| ||   ||||||||| || || ||| | |  |||||||| |||
Sbjct: 1873 ctacttgtccccatgagttc---gttgctgtagtttagatgactgctgacagcttggtga 1817

                                  
Query: 382  tcaatcttgccatcctgcagag 403
            |||||| ||||||| |||||||
Sbjct: 1816 tcaatcctgccatcttgcagag 1795



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 60/67 (89%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                        
Query: 55   cgctaaactgagaaaaccaaatgcaaaaggcatttgtgatgaaggcttgctactatggac 114
            ||||||||||| ||||||||||||||| ||||||||||||| |  |||||||||||  ||
Sbjct: 2137 cgctaaactga-aaaaccaaatgcaaagggcatttgtgatgcaatcttgctactataaac 2079

                   
Query: 115  aactttg 121
            |||||||
Sbjct: 2078 aactttg 2072



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                        
Query: 463  atgcgaaggtttggcaaagaagtgttgatgcctgaattgctgaacgcaaggttgctattg 522
            ||||||||||| ||||| | || ||||| ||||||||| || | |||||||||| |||| 
Sbjct: 1729 atgcgaaggttcggcaatgtagagttgacgcctgaattactaagcgcaaggttgttattc 1670

                                          
Query: 523  tgtgcctctctcgagtttgtgctgtttcca 552
             |   |||||||||||| |||||| |||||
Sbjct: 1669 agcatctctctcgagttcgtgctgcttcca 1640
to top
>ref|XM_464340.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2358

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                        
Query: 262  tccggcctgaacatgtcaacaacaatgtcatccaaaccaccactgagctccctttgcagc 321
            |||||||| ||||||||||||||||||||||| | ||||||||||||  |||||||||||
Sbjct: 1987 tccggcctaaacatgtcaacaacaatgtcatctagaccaccactgagacccctttgcagc 1928

               
Query: 322  cca 324
            |||
Sbjct: 1927 cca 1925



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 85/106 (80%), Gaps = 3/106 (2%)
 Strand = Plus / Minus

                                                                        
Query: 529  tctctcgagtttgtgctgtttccaaaggtgaatggcgctgcaccctgattgaataccatt 588
            ||||| |||||||||||| ||||| || ||||||| | ||   ||||||||||| | |||
Sbjct: 1723 tctcttgagtttgtgctgcttccatagttgaatggtgatgtgtcctgattgaatgctatt 1664

                                                          
Query: 589  ggaagggtattgctagctagtggcgcaacttgattctgcatctcat 634
            ||||    ||||||||||||||  || |||||   |||||||||||
Sbjct: 1663 ggaac---attgctagctagtgatgctacttggccctgcatctcat 1621
to top
>dbj|AK100530.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101H04, full
            insert sequence
          Length = 2358

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                        
Query: 262  tccggcctgaacatgtcaacaacaatgtcatccaaaccaccactgagctccctttgcagc 321
            |||||||| ||||||||||||||||||||||| | ||||||||||||  |||||||||||
Sbjct: 1987 tccggcctaaacatgtcaacaacaatgtcatctagaccaccactgagacccctttgcagc 1928

               
Query: 322  cca 324
            |||
Sbjct: 1927 cca 1925



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 85/106 (80%), Gaps = 3/106 (2%)
 Strand = Plus / Minus

                                                                        
Query: 529  tctctcgagtttgtgctgtttccaaaggtgaatggcgctgcaccctgattgaataccatt 588
            ||||| |||||||||||| ||||| || ||||||| | ||   ||||||||||| | |||
Sbjct: 1723 tctcttgagtttgtgctgcttccatagttgaatggtgatgtgtcctgattgaatgctatt 1664

                                                          
Query: 589  ggaagggtattgctagctagtggcgcaacttgattctgcatctcat 634
            ||||    ||||||||||||||  || |||||   |||||||||||
Sbjct: 1663 ggaac---attgctagctagtgatgctacttggccctgcatctcat 1621
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 57/62 (91%)
 Strand = Plus / Plus

                                                                           
Query: 263     ccggcctgaacatgtcaacaacaatgtcatccaaaccaccactgagctccctttgcagcc 322
               ||||||| ||||||||||||||||||||||| | ||||||||||||  ||||||||||||
Sbjct: 4574652 ccggcctaaacatgtcaacaacaatgtcatctagaccaccactgagacccctttgcagcc 4574711

                 
Query: 323     ca 324
               ||
Sbjct: 4574712 ca 4574713



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 67/82 (81%), Gaps = 3/82 (3%)
 Strand = Plus / Plus

                                                                           
Query: 529     tctctcgagtttgtgctgtttccaaaggtgaatggcgctgcaccctgattgaataccatt 588
               ||||| |||||||||||| ||||| || ||||||| | ||   ||||||||||| | |||
Sbjct: 4574915 tctcttgagtttgtgctgcttccatagttgaatggtgatgtgtcctgattgaatgctatt 4574974

                                     
Query: 589     ggaagggtattgctagctagtg 610
               ||||    ||||||||||||||
Sbjct: 4574975 ggaac---attgctagctagtg 4574993
to top
>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1297_C09
          Length = 163378

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 57/62 (91%)
 Strand = Plus / Plus

                                                                          
Query: 263    ccggcctgaacatgtcaacaacaatgtcatccaaaccaccactgagctccctttgcagcc 322
              ||||||| ||||||||||||||||||||||| | ||||||||||||  ||||||||||||
Sbjct: 110031 ccggcctaaacatgtcaacaacaatgtcatctagaccaccactgagacccctttgcagcc 110090

                
Query: 323    ca 324
              ||
Sbjct: 110091 ca 110092



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 85/106 (80%), Gaps = 3/106 (2%)
 Strand = Plus / Plus

                                                                          
Query: 529    tctctcgagtttgtgctgtttccaaaggtgaatggcgctgcaccctgattgaataccatt 588
              ||||| |||||||||||| ||||| || ||||||| | ||   ||||||||||| | |||
Sbjct: 110294 tctcttgagtttgtgctgcttccatagttgaatggtgatgtgtcctgattgaatgctatt 110353

                                                            
Query: 589    ggaagggtattgctagctagtggcgcaacttgattctgcatctcat 634
              ||||    ||||||||||||||  || |||||   |||||||||||
Sbjct: 110354 ggaac---attgctagctagtgatgctacttggccctgcatctcat 110396
to top
>gb|AY105903.1| Zea mays PCO136772 mRNA sequence
          Length = 915

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 116/142 (81%), Gaps = 3/142 (2%)
 Strand = Plus / Minus

                                                                       
Query: 262 tccggcctgaacatgtcaacaacaatgtcatccaaaccaccactgagctccctttgcagc 321
           |||||||| |||||||| || ||||||||||||| ||||||||| ||  |||||||||||
Sbjct: 723 tccggcctaaacatgtccacgacaatgtcatccagaccaccactaagtcccctttgcagc 664

                                                                       
Query: 322 ccactcgtccccacgagatcattgttgctgtaattgagctgattaccaacagcttgctga 381
           | ||  ||||||| ||| ||   |||| |||| || || ||| | |  |||||||| |||
Sbjct: 663 ctacctgtccccatgagttc---gttgttgtagtttagatgactgctgacagcttggtga 607

                                 
Query: 382 tcaatcttgccatcctgcagag 403
           |||||| ||||||| |||||||
Sbjct: 606 tcaatcctgccatcttgcagag 585



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                       
Query: 463 atgcgaaggtttggcaaagaagtgttgatgcctgaattgctgaacgcaaggttgctattg 522
           ||||||||||| ||||| | || ||||| ||||||||| || | |||||||||| |||| 
Sbjct: 519 atgcgaaggttcggcaatgtagagttgacgcctgaattactaagcgcaaggttgttattc 460

                                         
Query: 523 tgtgcctctctcgagtttgtgctgtttcca 552
            |   |||||||||||| |||||| |||||
Sbjct: 459 agcatctctctcgagttcgtgctgcttcca 430



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 75  atgcaaaaggcatttgtgatgaaggcttgctactatggacaactttg 121
           ||||||| ||||||||||||| |  |||||||||||  |||||||||
Sbjct: 908 atgcaaagggcatttgtgatgcaatcttgctactataaacaactttg 862
to top
>gb|AC131912.6| Mus musculus chromosome 9, clone RP24-164A20, complete sequence
          Length = 204724

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 275    tgtcaacaacaatgtcatccaaacca 300
              |||| |||||||||||||||||||||
Sbjct: 117667 tgtctacaacaatgtcatccaaacca 117642
to top
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 67      aaaaccaaatgcaaaaggcat 87
               |||||||||||||||||||||
Sbjct: 3422426 aaaaccaaatgcaaaaggcat 3422406
to top
>gb|AC126959.6| Rattus norvegicus 8 BAC CH230-10P12 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 212481

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 280   acaacaatgtcatccaaacca 300
             |||||||||||||||||||||
Sbjct: 97480 acaacaatgtcatccaaacca 97460
to top
>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 166     acaaatgcggaaaatctcgcg 186
               |||||||||||||||||||||
Sbjct: 2673363 acaaatgcggaaaatctcgcg 2673343
to top
>gb|AC183538.4| Pan troglodytes BAC clone CH251-395P17 from chromosome x, complete
              sequence
          Length = 186120

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 294    caaaccaccactgagctccctttg 317
              ||||||||||||||||||| ||||
Sbjct: 126898 caaaccaccactgagctccttttg 126921
to top
>ref|XM_959687.1| Neurospora crassa OR74A hypothetical protein (NCU00864.1) partial
           mRNA
          Length = 852

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 catgtcaacaacaatgtcat 292
           ||||||||||||||||||||
Sbjct: 234 catgtcaacaacaatgtcat 215
to top
>ref|XM_325043.1| Neurospora crassa OR74A hypothetical protein (NCU00864.1) partial
           mRNA
          Length = 852

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 catgtcaacaacaatgtcat 292
           ||||||||||||||||||||
Sbjct: 234 catgtcaacaacaatgtcat 215
to top
>gb|U40238.2| Uncultured crenarchaeote 4B7 40 kb genomic fragment
          Length = 41327

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 473   ttggcaaagaagtgttgatg 492
             ||||||||||||||||||||
Sbjct: 39590 ttggcaaagaagtgttgatg 39571
to top
>ref|XM_950310.1| Theileria annulata strain Ankara hypothetical protein (TA17855)
           partial mRNA
          Length = 1392

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 270 gaacatgtcaacaacaatgtcatc 293
           |||||| |||||||||||||||||
Sbjct: 858 gaacatatcaacaacaatgtcatc 835
to top
>emb|Z98950.1|HS507I15 Human DNA sequence from clone RP3-507I15 on chromosome Xq26.3-27.3
             Contains a ribosomal protein L36a (RPL36A) pseudogene,
             complete sequence
          Length = 123556

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 294   caaaccaccactgagctccctttg 317
             ||||||||||||||||||| ||||
Sbjct: 32616 caaaccaccactgagctccttttg 32593
to top
>emb|AL162500.15| Human DNA sequence from clone RP11-318K19 on chromosome 13 Contains
             part of the UGCGL2 gene for UDP-glucose ceramide
             glucosyltransferase-like 2 (HUGT2 FLJ10873 FLJ11485), a
             novel gene and two CpG islands, complete sequence
          Length = 128554

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 394   tcctgcagagagggaacacc 413
             ||||||||||||||||||||
Sbjct: 72643 tcctgcagagagggaacacc 72624
to top
>emb|BX957219.1| Methanococcus maripaludis S2 complete genome; segment 1/5
          Length = 345730

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 270    gaacatgtcaacaacaatgtcatc 293
              |||||||||||| |||||||||||
Sbjct: 320048 gaacatgtcaactacaatgtcatc 320071
to top
>gb|AC090415.5| Homo sapiens chromosome 18, clone RP11-529J17, complete sequence
          Length = 155847

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    gaaaaccaaatgcaaaaggcattt 89
             ||||||||||||||||| ||||||
Sbjct: 92920 gaaaaccaaatgcaaaaagcattt 92897
to top
>gb|AC083807.17| Homo sapiens 12 BAC RP11-775A14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 123587

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    caggcaattgcatatgatgg 143
              ||||||||||||||||||||
Sbjct: 114108 caggcaattgcatatgatgg 114127
to top
>gb|AC091691.7| Homo sapiens chromosome 18, clone RP11-47G4, complete sequence
          Length = 164314

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 66   gaaaaccaaatgcaaaaggcattt 89
            ||||||||||||||||| ||||||
Sbjct: 1516 gaaaaccaaatgcaaaaagcattt 1493
to top
>gb|AF346498.1|AF346498 Photorhabdus luminescens strain W14 toxin complex tcb locus, partial
            sequence
          Length = 16190

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 358  agctgattaccaacagcttgctga 381
            |||||||| |||||||||||||||
Sbjct: 4267 agctgattgccaacagcttgctga 4244
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 354      attgagctgattaccaacag 373
                ||||||||||||||||||||
Sbjct: 26083190 attgagctgattaccaacag 26083209
to top
>gb|AC107210.5| Homo sapiens BAC clone RP11-70M19 from 4, complete sequence
          Length = 112895

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   caattgcatatgatggacaa 147
             ||||||||||||||||||||
Sbjct: 25715 caattgcatatgatggacaa 25696
to top
>ref|XM_573858.1| PREDICTED: Rattus norvegicus similar to chromosome 10 open reading
            frame 64 (LOC498582), mRNA
          Length = 5003

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  agcagcagacaccacacaaa 170
            ||||||||||||||||||||
Sbjct: 2096 agcagcagacaccacacaaa 2077
to top
>gb|AC007385.3| Homo sapiens BAC clone RP11-325M10 from 2, complete sequence
          Length = 188062

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    atgtcaacaacaatgtcatc 293
              ||||||||||||||||||||
Sbjct: 174581 atgtcaacaacaatgtcatc 174562
to top
>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0062J02
          Length = 151636

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 354   attgagctgattaccaacag 373
             ||||||||||||||||||||
Sbjct: 62435 attgagctgattaccaacag 62454
to top
>dbj|AK120334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059I04, full
            insert sequence
          Length = 4436

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 354  attgagctgattaccaacag 373
            ||||||||||||||||||||
Sbjct: 2753 attgagctgattaccaacag 2734
to top
>emb|CR354581.11| Zebrafish DNA sequence from clone CH211-231O17 in linkage group 7,
             complete sequence
          Length = 47648

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    aaacgctaaactgagaaaac 71
             ||||||||||||||||||||
Sbjct: 22221 aaacgctaaactgagaaaac 22240
to top
>emb|CR352257.8| Zebrafish DNA sequence from clone CH211-261B21 in linkage group 7,
              complete sequence
          Length = 159979

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     aaacgctaaactgagaaaac 71
              ||||||||||||||||||||
Sbjct: 142050 aaacgctaaactgagaaaac 142031
to top
>gb|AF047457.1|AF047457 Photorhabdus luminescens insecticidal toxin complex protein TcbA
            (tcbA) gene, complete cds
          Length = 7515

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 358  agctgattaccaacagcttgctga 381
            |||||||| |||||||||||||||
Sbjct: 1547 agctgattgccaacagcttgctga 1524
to top
>gb|AC091069.2| Homo sapiens chromosome 3 clone RP11-161L3 map 3p, complete sequence
          Length = 164802

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 58    taaactgagaaaaccaaatgcaaa 81
             ||||||||||||| ||||||||||
Sbjct: 88848 taaactgagaaaaacaaatgcaaa 88871
to top
>dbj|AB028205.1| Porphyra yezoensis gene for vacuolar-ATPase c subunit, complete cds
          Length = 1562

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 149 tcagcagcagacaccacaca 168
           ||||||||||||||||||||
Sbjct: 758 tcagcagcagacaccacaca 739


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,057,916
Number of Sequences: 3902068
Number of extensions: 5057916
Number of successful extensions: 94783
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94619
Number of HSP's gapped (non-prelim): 161
length of query: 634
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 611
effective length of database: 17,143,297,704
effective search space: 10474554897144
effective search space used: 10474554897144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top