ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26d19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102931.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 3e-40
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
3dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
4emb|AL670413.19| Mouse DNA sequence from clone RP23-298E4 on chr... 50 0.010
5emb|AL670227.7| Mouse DNA sequence from clone RP23-317N1 on chro... 50 0.010
6gb|AC145740.4| Mus musculus BAC clone RP24-233K8 from chromosome... 46 0.16
7gb|AC115037.16| Mus musculus chromosome 12, clone RP24-276C17, c... 46 0.16
8gb|AC119156.9| Mus musculus chromosome 1, clone RP24-534J20, com... 44 0.63
9dbj|AP000781.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 44 0.63
10ref|XM_481520.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.5
11gb|AY360386.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.5
12gb|AC101882.14| Mus musculus chromosome 10, clone RP23-394M6, co... 42 2.5
13gb|AC123769.5| Homo sapiens chromosome 17, clone RP11-1086I4, co... 42 2.5
14gb|AC103948.4| Homo sapiens chromosome 17, clone CTD-3058D16, co... 42 2.5
15gb|AC008942.6| Homo sapiens chromosome 5 clone CTD-2320O4, compl... 42 2.5
16gb|AC008807.10| Homo sapiens chromosome 5 clone CTD-2087C24, com... 42 2.5
17dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
18dbj|AP005832.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
19dbj|AP004228.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
20gb|AC109257.8| Mus musculus chromosome 7, clone RP23-362F15, com... 40 9.8
21gb|AC132119.2| Mus musculus BAC clone RP23-467E2 from chromosome... 40 9.8
22emb|CT025566.7| Mouse DNA sequence from clone RP24-151A22 on chr... 40 9.8
23gb|AC124590.4| Mus musculus BAC clone RP23-133P12 from chromosom... 40 9.8
24ref|NM_016721.1| Mus musculus IQ motif containing GTPase activat... 40 9.8
25ref|XM_650691.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 9.8
26emb|AL731560.4| Human DNA sequence from clone RP11-481O16 on chr... 40 9.8
27emb|AL365502.57| Human DNA sequence from clone RP11-48C7 on chro... 40 9.8
28emb|AL137003.12| Human DNA sequence from clone RP1-151F17 on chr... 40 9.8
29emb|AL118506.27|HSJ591C20 Human DNA sequence from clone RP4-591C... 40 9.8
30emb|Y12540.1|AGIDHC A.graveolens mRNA for isocitrate dehydrogena... 40 9.8
31emb|CR405705.11| Zebrafish DNA sequence from clone DKEY-64E13 in... 40 9.8
32emb|BX323574.12| Zebrafish DNA sequence from clone DKEY-180F8, c... 40 9.8
33emb|AL672072.18| Zebrafish DNA sequence from clone BUSM1-55H21 C... 40 9.8
34gb|BC046385.1| Mus musculus IQ motif containing GTPase activatin... 40 9.8
35emb|CR595822.1| full-length cDNA clone CS0DC021YA18 of Neuroblas... 40 9.8
36emb|CR594251.1| full-length cDNA clone CS0DF033YH05 of Fetal bra... 40 9.8
37dbj|AB243085.1| Codonopsis lanceolata mRNA for NADP-isocitrate d... 40 9.8
38dbj|AK160892.1| Mus musculus 12 days embryo embryonic body below... 40 9.8
39dbj|AK154213.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 9.8
40dbj|AK029631.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 9.8
41gb|AC159297.3| Mus musculus BAC clone RP23-258F9 from chromosome... 40 9.8
42dbj|AK077354.1| Mus musculus adult male pituitary gland cDNA, RI... 40 9.8
43gb|AY997887.1| Lathrocasis tenerrima voucher Johnson 93-103 WS i... 40 9.8
44gb|AC039056.7|AC039056 Homo sapiens chromosome 15 clone CTD-2382... 40 9.8
45gb|AC084693.2|AC084693 Homo sapiens chromosome 15 clone RP11-35K... 40 9.8
46gb|AC009224.6| Homo sapiens BAC clone RP11-92G23 from 2, complet... 40 9.8
47gb|AC073912.38| Homo sapiens 12 BAC RP11-989F5 (Roswell Park Can... 40 9.8
48gb|AC108673.11| Homo sapiens 3 BAC RP11-434H6 (Roswell Park Canc... 40 9.8
49emb|BX005249.6| Zebrafish DNA sequence from clone CH211-188M4, c... 40 9.8
50gb|AC087623.21| Homo sapiens chromosome 8, clone RP11-350N15, co... 40 9.8
51emb|BX572082.4| Mouse DNA sequence from clone RP23-114B24 on chr... 40 9.8
52gb|AF240630.1|AF240630 Mus musculus IQ motif containing GTPase a... 40 9.8
53emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on ch... 40 9.8
54dbj|AK129044.1| Mus musculus mRNA for mKIAA0051 protein 40 9.8
55emb|AL672171.8| Zebrafish DNA sequence from clone BUSM1-270G24 i... 40 9.8
56gb|AC122424.4| Mus musculus BAC clone RP24-173E19 from 8, comple... 40 9.8
57gb|AC142262.3| Mus musculus BAC clone RP24-486I4 from 8, complet... 40 9.8
58gb|AC142112.3| Mus musculus BAC clone RP24-87H1 from 12, complet... 40 9.8
59emb|BX088546.7| Mouse DNA sequence from clone RP23-96D6 on chrom... 40 9.8
60gb|AC002112.1|AC002112 Genomic sequence from Human 6, complete s... 40 9.8
61emb|AL772291.9| Mouse DNA sequence from clone RP23-395G1 on chro... 40 9.8
62gb|AC087362.13| Homo sapiens chromosome 8, clone RP11-513D5, com... 40 9.8
63gb|AC165250.2| Mus musculus BAC clone RP24-209D3 from chromosome... 40 9.8 
>dbj|AK102931.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114H01, full
           insert sequence
          Length = 1222

 Score =  174 bits (88), Expect = 3e-40
 Identities = 181/212 (85%)
 Strand = Plus / Minus

                                                                       
Query: 285 atgtcccgatgaaagtgccctggaatcgagttgccctgctgagattgtctgaggtgcatg 344
           ||||||||||| ||||||||||||||||||||| | ||||||| ||| || || ||||||
Sbjct: 907 atgtcccgatggaagtgccctggaatcgagttggcttgctgagcttgcctaagatgcatg 848

                                                                       
Query: 345 gacaaggcgtagttgtttatctcgagacttctaatttgttcccggtactgcataaccaac 404
           ||||  || |||||||||| ||| || ||||||||||| ||  |||||||   ||||| |
Sbjct: 847 gacagtgcatagttgtttacctccaggcttctaatttgctcttggtactgagcaaccagc 788

                                                                       
Query: 405 tgctttagttgctgaagctcctggtttctctcgtcatgctccttctggcgttcatgttga 464
           ||||| |||||||||| ||||||||||||| | ||||||||||| ||||| || || |||
Sbjct: 787 tgcttgagttgctgaatctcctggtttctcccatcatgctccttttggcgctcgtgctga 728

                                           
Query: 465 attgccacagctttcttaagaatagtattttc 496
           ||||| || |||||||| ||||||||||||||
Sbjct: 727 attgcaacggctttctttagaatagtattttc 696



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                       
Query: 598 cctccagtactattgacgcacgagcctttgcatcatctgaattagaggcacttgccatct 657
           |||||| |||| | || ||||||||||||||||||||    ||||||||| | | |||||
Sbjct: 600 cctccaatactctagaggcacgagcctttgcatcatccatgttagaggcattagtcatct 541

                                        
Query: 658 cattcataagaatctcaacccattgggtg 686
           | |||| ||||||||||||||| ||||||
Sbjct: 540 cgttcacaagaatctcaacccactgggtg 512
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  105 bits (53), Expect = 2e-19
 Identities = 107/125 (85%)
 Strand = Plus / Plus

                                                                           
Query: 372     cttctaatttgttcccggtactgcataaccaactgctttagttgctgaagctcctggttt 431
               ||||||||||| ||  |||||||   ||||| |||||| |||||||||| ||||||||||
Sbjct: 1411553 cttctaatttgctcttggtactgagcaaccagctgcttgagttgctgaatctcctggttt 1411612

                                                                           
Query: 432     ctctcgtcatgctccttctggcgttcatgttgaattgccacagctttcttaagaatagta 491
               ||| | ||||||||||| ||||| || || |||||||| || |||||||| |||||||||
Sbjct: 1411613 ctcccatcatgctccttttggcgctcgtgctgaattgcaacggctttctttagaatagta 1411672

                    
Query: 492     ttttc 496
               |||||
Sbjct: 1411673 ttttc 1411677



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                           
Query: 285     atgtcccgatgaaagtgccctggaatcgagttgccctgctgagattgtctgaggtgcatg 344
               ||||||||||| ||||||||||||||||||||| | ||||||| ||| || || ||||||
Sbjct: 1411356 atgtcccgatggaagtgccctggaatcgagttggcttgctgagcttgcctaagatgcatg 1411415

                                  
Query: 345     gacaaggcgtagttgttta 363
               ||||  || ||||||||||
Sbjct: 1411416 gacagtgcatagttgttta 1411434



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                           
Query: 598     cctccagtactattgacgcacgagcctttgcatcatctgaattagaggcacttgccatct 657
               |||||| |||| | || ||||||||||||||||||||    ||||||||| | | |||||
Sbjct: 1414369 cctccaatactctagaggcacgagcctttgcatcatccatgttagaggcattagtcatct 1414428

                                            
Query: 658     cattcataagaatctcaacccattgggtg 686
               | |||| ||||||||||||||| ||||||
Sbjct: 1414429 cgttcacaagaatctcaacccactgggtg 1414457
to top
>dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1512_E04
          Length = 157848

 Score =  105 bits (53), Expect = 2e-19
 Identities = 107/125 (85%)
 Strand = Plus / Plus

                                                                         
Query: 372   cttctaatttgttcccggtactgcataaccaactgctttagttgctgaagctcctggttt 431
             ||||||||||| ||  |||||||   ||||| |||||| |||||||||| ||||||||||
Sbjct: 29666 cttctaatttgctcttggtactgagcaaccagctgcttgagttgctgaatctcctggttt 29725

                                                                         
Query: 432   ctctcgtcatgctccttctggcgttcatgttgaattgccacagctttcttaagaatagta 491
             ||| | ||||||||||| ||||| || || |||||||| || |||||||| |||||||||
Sbjct: 29726 ctcccatcatgctccttttggcgctcgtgctgaattgcaacggctttctttagaatagta 29785

                  
Query: 492   ttttc 496
             |||||
Sbjct: 29786 ttttc 29790



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                         
Query: 285   atgtcccgatgaaagtgccctggaatcgagttgccctgctgagattgtctgaggtgcatg 344
             ||||||||||| ||||||||||||||||||||| | ||||||| ||| || || ||||||
Sbjct: 29469 atgtcccgatggaagtgccctggaatcgagttggcttgctgagcttgcctaagatgcatg 29528

                                
Query: 345   gacaaggcgtagttgttta 363
             ||||  || ||||||||||
Sbjct: 29529 gacagtgcatagttgttta 29547



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                         
Query: 598   cctccagtactattgacgcacgagcctttgcatcatctgaattagaggcacttgccatct 657
             |||||| |||| | || ||||||||||||||||||||    ||||||||| | | |||||
Sbjct: 32482 cctccaatactctagaggcacgagcctttgcatcatccatgttagaggcattagtcatct 32541

                                          
Query: 658   cattcataagaatctcaacccattgggtg 686
             | |||| ||||||||||||||| ||||||
Sbjct: 32542 cgttcacaagaatctcaacccactgggtg 32570
to top
>emb|AL670413.19| Mouse DNA sequence from clone RP23-298E4 on chromosome 4, complete
              sequence
          Length = 243792

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 91     caggctgggctgccttccctccctc 115
              |||||||||||||||||||||||||
Sbjct: 243479 caggctgggctgccttccctccctc 243503
to top
>emb|AL670227.7| Mouse DNA sequence from clone RP23-317N1 on chromosome 4, complete
            sequence
          Length = 219973

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 91   caggctgggctgccttccctccctc 115
            |||||||||||||||||||||||||
Sbjct: 1687 caggctgggctgccttccctccctc 1711
to top
>gb|AC145740.4| Mus musculus BAC clone RP24-233K8 from chromosome 12, complete sequence
          Length = 178285

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 490   tattttctttattgacagcttcaaatt 516
             |||||||||||| ||||||||||||||
Sbjct: 65008 tattttctttatagacagcttcaaatt 65034
to top
>gb|AC115037.16| Mus musculus chromosome 12, clone RP24-276C17, complete sequence
          Length = 214848

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 490   tattttctttattgacagcttcaaatt 516
             |||||||||||| ||||||||||||||
Sbjct: 43378 tattttctttatagacagcttcaaatt 43352
to top
>gb|AC119156.9| Mus musculus chromosome 1, clone RP24-534J20, complete sequence
          Length = 185873

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 474   gctttcttaagaatagtatttt 495
             ||||||||||||||||||||||
Sbjct: 22882 gctttcttaagaatagtatttt 22861
to top
>dbj|AP000781.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-872D17, complete
              sequence
          Length = 190251

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 98     ggctgccttccctccctcccca 119
              ||||||||||||||||||||||
Sbjct: 108017 ggctgccttccctccctcccca 108038
to top
>ref|XM_481520.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 570

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 296 aaagtgccctggaatcgagttgccctgctgagattgtctgaggtgcatg 344
           |||| |||||||||| ||| |||||||||||| ||| || ||| |||||
Sbjct: 552 aaagcgccctggaattgagctgccctgctgagcttgcctaaggagcatg 504
to top
>gb|AY360386.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0017M13,
              complete sequence
          Length = 161902

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                               
Query: 296    aaagtgccctggaatcgagttgccctgctgagattgtctgaggtgcatg 344
              |||| |||||||||| ||| |||||||||||| ||| || ||| |||||
Sbjct: 110080 aaagcgccctggaattgagctgccctgctgagcttgcctaaggagcatg 110128
to top
>gb|AC101882.14| Mus musculus chromosome 10, clone RP23-394M6, complete sequence
          Length = 209838

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 546    tatttctgcattgcttctgta 566
              |||||||||||||||||||||
Sbjct: 107118 tatttctgcattgcttctgta 107138
to top
>gb|AC123769.5| Homo sapiens chromosome 17, clone RP11-1086I4, complete sequence
          Length = 190245

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 471   acagctttcttaagaatagtatttt 495
             |||||||||||||| ||||||||||
Sbjct: 60516 acagctttcttaagtatagtatttt 60492
to top
>gb|AC103948.4| Homo sapiens chromosome 17, clone CTD-3058D16, complete sequence
          Length = 72416

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 471   acagctttcttaagaatagtatttt 495
             |||||||||||||| ||||||||||
Sbjct: 69659 acagctttcttaagtatagtatttt 69683
to top
>gb|AC008942.6| Homo sapiens chromosome 5 clone CTD-2320O4, complete sequence
          Length = 148917

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 479   cttaagaatagtattttcttt 499
             |||||||||||||||||||||
Sbjct: 23881 cttaagaatagtattttcttt 23901
to top
>gb|AC008807.10| Homo sapiens chromosome 5 clone CTD-2087C24, complete sequence
          Length = 126189

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 479   cttaagaatagtattttcttt 499
             |||||||||||||||||||||
Sbjct: 81415 cttaagaatagtattttcttt 81435
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                 
Query: 296      aaagtgccctggaatcgagttgccctgctgagattgtctgaggtgcatg 344
                |||| |||||||||| ||| |||||||||||| ||| || ||| |||||
Sbjct: 13385607 aaagcgccctggaattgagctgccctgctgagcttgcctaaggagcatg 13385655
to top
>dbj|AP005832.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1136D08
          Length = 176635

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                               
Query: 296    aaagtgccctggaatcgagttgccctgctgagattgtctgaggtgcatg 344
              |||| |||||||||| ||| |||||||||||| ||| || ||| |||||
Sbjct: 137076 aaagcgccctggaattgagctgccctgctgagcttgcctaaggagcatg 137124
to top
>dbj|AP004228.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1120_B07
          Length = 118763

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 296   aaagtgccctggaatcgagttgccctgctgagattgtctgaggtgcatg 344
             |||| |||||||||| ||| |||||||||||| ||| || ||| |||||
Sbjct: 22334 aaagcgccctggaattgagctgccctgctgagcttgcctaaggagcatg 22382
to top
>gb|AC109257.8| Mus musculus chromosome 7, clone RP23-362F15, complete sequence
          Length = 158694

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 461  ttgaattgccacagctttct 480
            ||||||||||||||||||||
Sbjct: 4374 ttgaattgccacagctttct 4393
to top
>gb|AC132119.2| Mus musculus BAC clone RP23-467E2 from chromosome 6, complete sequence
          Length = 161817

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    caccataaatcaacctgtgg 186
              ||||||||||||||||||||
Sbjct: 141098 caccataaatcaacctgtgg 141117
to top
>emb|CT025566.7| Mouse DNA sequence from clone RP24-151A22 on chromosome 13, complete
            sequence
          Length = 149381

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 37   ctacttactttcaaacttataaca 60
            |||||||||||||||| |||||||
Sbjct: 8945 ctacttactttcaaacatataaca 8968
to top
>gb|AC124590.4| Mus musculus BAC clone RP23-133P12 from chromosome 6, complete
            sequence
          Length = 215946

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 167  caccataaatcaacctgtgg 186
            ||||||||||||||||||||
Sbjct: 2416 caccataaatcaacctgtgg 2435
to top
>ref|NM_016721.1| Mus musculus IQ motif containing GTPase activating protein 1
            (Iqgap1), mRNA
          Length = 6124

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  ttgaattgccacagctttct 480
            ||||||||||||||||||||
Sbjct: 4144 ttgaattgccacagctttct 4125
to top
>ref|XM_650691.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (23.t00026)
           partial mRNA
          Length = 519

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 480 ttaagaatagtattttcttt 499
           ||||||||||||||||||||
Sbjct: 422 ttaagaatagtattttcttt 403
to top
>emb|AL731560.4| Human DNA sequence from clone RP11-481O16 on chromosome 10 Contains
             part of the KCNMA1 gene for potassium large conductance
             calcium-activated channel subfamily M alpha member 1,
             complete sequence
          Length = 102416

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    gggctgccttccctccctcc 116
             ||||||||||||||||||||
Sbjct: 12747 gggctgccttccctccctcc 12728
to top
>emb|AL365502.57| Human DNA sequence from clone RP11-48C7 on chromosome 9q34.2-34.3
             Contains the gene for nasal embryonic luteinizing
             hormone-releasing hormone factor (DKFZP586J1624), a novel
             gene (FLJ31318), the MRPL41 gene for mitochondrial
             ribosomal protein L41 (RPML27, MRP-L270), a novel gene
             (LOC9271), the gene for melanin-concentrating hormone
             receptor 1 interacting zinc-finger protein (ZMYND17)
             (MIZIP), a novel gene (MGC40555), a novel protein and
             eleven CpG islands, complete sequence
          Length = 174995

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   tccctccctccccatgggag 125
             ||||||||||||||||||||
Sbjct: 43350 tccctccctccccatgggag 43369
to top
>emb|AL137003.12| Human DNA sequence from clone RP1-151F17 on chromosome 6 Contains the
             3' end of the SCA1 gene for spinocerebellar ataxia
             1n(olivopontocerebellar ataxia 1, autosomal dominant,
             ataxin 1), complete sequence
          Length = 113802

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   tgctttagttgctgaagctc 424
             ||||||||||||||||||||
Sbjct: 83003 tgctttagttgctgaagctc 82984
to top
>emb|AL118506.27|HSJ591C20 Human DNA sequence from clone RP4-591C20 on chromosome 20 Contains the
             C20orf135 gene for chromosome 20 open reading frame 135,
             the TPD52L2 gene for tumor protein D52-like protein 2, the
             DNAJC5 gene for member 5 of DnaJ (Hsp40) homolog subfamily
             C, the URKL1 gene for uridine kinase-like 1, the gene for
             a novel protein (KIAA1196), the C20orf136 gene for
             chromosome 20 open reading frame 136, the 5' end of the
             C20orf14 gene for chromosome 20 open reading frame 14 and
             twelve CpG islands, complete sequence
          Length = 139505

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   tccctccctccccatgggag 125
             ||||||||||||||||||||
Sbjct: 80699 tccctccctccccatgggag 80718
to top
>emb|Y12540.1|AGIDHC A.graveolens mRNA for isocitrate dehydrogenase (NADP+)
          Length = 1535

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 476 tttcttaagaatagtatttt 495
           ||||||||||||||||||||
Sbjct: 720 tttcttaagaatagtatttt 701
to top
>emb|CR405705.11| Zebrafish DNA sequence from clone DKEY-64E13 in linkage group 17,
             complete sequence
          Length = 155058

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    aatgtgtttttctacttact 45
             ||||||||||||||||||||
Sbjct: 81687 aatgtgtttttctacttact 81668
to top
>emb|BX323574.12| Zebrafish DNA sequence from clone DKEY-180F8, complete sequence
          Length = 171724

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   atatttctgcattgcttctg 564
             ||||||||||||||||||||
Sbjct: 34416 atatttctgcattgcttctg 34397
to top
>emb|AL672072.18| Zebrafish DNA sequence from clone BUSM1-55H21 Contains a CpG island,
             complete sequence
          Length = 100697

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    aatgtgtttttctacttact 45
             ||||||||||||||||||||
Sbjct: 50026 aatgtgtttttctacttact 50007
to top
>gb|BC046385.1| Mus musculus IQ motif containing GTPase activating protein 1, mRNA
            (cDNA clone MGC:51367 IMAGE:3256630), complete cds
          Length = 5791

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  ttgaattgccacagctttct 480
            ||||||||||||||||||||
Sbjct: 4099 ttgaattgccacagctttct 4080
to top
>emb|CR595822.1| full-length cDNA clone CS0DC021YA18 of Neuroblastoma Cot
            25-normalized of Homo sapiens (human)
          Length = 1608

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 106  tccctccctccccatgggag 125
            ||||||||||||||||||||
Sbjct: 1496 tccctccctccccatgggag 1515
to top
>emb|CR594251.1| full-length cDNA clone CS0DF033YH05 of Fetal brain of Homo sapiens
            (human)
          Length = 1530

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  tccctccctccccatgggag 125
            ||||||||||||||||||||
Sbjct: 1480 tccctccctccccatgggag 1461
to top
>dbj|AB243085.1| Codonopsis lanceolata mRNA for NADP-isocitrate dehydrogenase,
           complete cds
          Length = 1500

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 476 tttcttaagaatagtatttt 495
           ||||||||||||||||||||
Sbjct: 751 tttcttaagaatagtatttt 732
to top
>dbj|AK160892.1| Mus musculus 12 days embryo embryonic body below diaphragm region
            cDNA, RIKEN full-length enriched library,
            clone:3732415J11 product:IQ motif containing GTPase
            activating protein 1, full insert sequence
          Length = 4890

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  ttgaattgccacagctttct 480
            ||||||||||||||||||||
Sbjct: 1716 ttgaattgccacagctttct 1697
to top
>dbj|AK154213.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630009O19
           product:IQ motif containing GTPase activating protein 1,
           full insert sequence
          Length = 2808

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 ttgaattgccacagctttct 480
           ||||||||||||||||||||
Sbjct: 896 ttgaattgccacagctttct 877
to top
>dbj|AK029631.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930417E17 product:IQ motif containing
            GTPase activating protein 1, full insert sequence
          Length = 3094

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  ttgaattgccacagctttct 480
            ||||||||||||||||||||
Sbjct: 1878 ttgaattgccacagctttct 1859
to top
>gb|AC159297.3| Mus musculus BAC clone RP23-258F9 from chromosome 12, complete sequence
          Length = 193434

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   ccttccctccctccccatgg 122
             ||||||||||||||||||||
Sbjct: 79512 ccttccctccctccccatgg 79531
to top
>dbj|AK077354.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length
            enriched library, clone:5330436H04 product:IQ motif
            containing GTPase activating protein 1, full insert
            sequence
          Length = 2833

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  ttgaattgccacagctttct 480
            ||||||||||||||||||||
Sbjct: 1106 ttgaattgccacagctttct 1087
to top
>gb|AY997887.1| Lathrocasis tenerrima voucher Johnson 93-103 WS isocitrate
           dehydrogenase gene, exons H-M and partial cds
          Length = 1046

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 476 tttcttaagaatagtatttt 495
           ||||||||||||||||||||
Sbjct: 192 tttcttaagaatagtatttt 173
to top
>gb|AC039056.7|AC039056 Homo sapiens chromosome 15 clone CTD-2382E5 map 15q14, complete sequence
          Length = 176708

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     gctgccttccctccctcccc 118
              ||||||||||||||||||||
Sbjct: 129469 gctgccttccctccctcccc 129450
to top
>gb|AC084693.2|AC084693 Homo sapiens chromosome 15 clone RP11-35K2 map 15q15, complete sequence
          Length = 173660

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    gctgccttccctccctcccc 118
             ||||||||||||||||||||
Sbjct: 50810 gctgccttccctccctcccc 50791
to top
>gb|AC009224.6| Homo sapiens BAC clone RP11-92G23 from 2, complete sequence
          Length = 144784

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 482   aagaatagtattttctttat 501
             ||||||||||||||||||||
Sbjct: 29813 aagaatagtattttctttat 29794
to top
>gb|AC073912.38| Homo sapiens 12 BAC RP11-989F5 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 211550

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  tccctccctccccatgggag 125
            ||||||||||||||||||||
Sbjct: 6913 tccctccctccccatgggag 6894
to top
>gb|AC108673.11| Homo sapiens 3 BAC RP11-434H6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 137864

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   ccttccctccctccccatgg 122
             ||||||||||||||||||||
Sbjct: 21200 ccttccctccctccccatgg 21181
to top
>emb|BX005249.6| Zebrafish DNA sequence from clone CH211-188M4, complete sequence
          Length = 154305

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    tctacttactttcaaactta 55
             ||||||||||||||||||||
Sbjct: 75397 tctacttactttcaaactta 75416
to top
>gb|AC087623.21| Homo sapiens chromosome 8, clone RP11-350N15, complete sequence
          Length = 162835

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 480    ttaagaatagtattttcttt 499
              ||||||||||||||||||||
Sbjct: 132110 ttaagaatagtattttcttt 132129
to top
>emb|BX572082.4| Mouse DNA sequence from clone RP23-114B24 on chromosome X, complete
             sequence
          Length = 88681

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 665   aagaatctcaacccattggg 684
             ||||||||||||||||||||
Sbjct: 38058 aagaatctcaacccattggg 38039
to top
>gb|AF240630.1|AF240630 Mus musculus IQ motif containing GTPase activating protein 1 (Iqgap1)
            mRNA, complete cds
          Length = 6124

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  ttgaattgccacagctttct 480
            ||||||||||||||||||||
Sbjct: 4144 ttgaattgccacagctttct 4125
to top
>emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on chromosome X, complete
             sequence
          Length = 167407

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   ctgccttccctccctcccca 119
             ||||||||||||||||||||
Sbjct: 16134 ctgccttccctccctcccca 16115
to top
>dbj|AK129044.1| Mus musculus mRNA for mKIAA0051 protein
          Length = 6100

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  ttgaattgccacagctttct 480
            ||||||||||||||||||||
Sbjct: 4119 ttgaattgccacagctttct 4100
to top
>emb|AL672171.8| Zebrafish DNA sequence from clone BUSM1-270G24 in linkage group 3
             Contains a CpG island, complete sequence
          Length = 114103

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    aatgtgtttttctacttact 45
             ||||||||||||||||||||
Sbjct: 51494 aatgtgtttttctacttact 51475
to top
>gb|AC122424.4| Mus musculus BAC clone RP24-173E19 from 8, complete sequence
          Length = 175181

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 104   cttccctccctccccatgggagagggaa 131
             ||||||||||||||| | ||||||||||
Sbjct: 20093 cttccctccctcccctttggagagggaa 20120
to top
>gb|AC142262.3| Mus musculus BAC clone RP24-486I4 from 8, complete sequence
          Length = 204183

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 104   cttccctccctccccatgggagagggaa 131
             ||||||||||||||| | ||||||||||
Sbjct: 46869 cttccctccctcccctttggagagggaa 46842
to top
>gb|AC142112.3| Mus musculus BAC clone RP24-87H1 from 12, complete sequence
          Length = 229085

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 412    gttgctgaagctcctggtttctct 435
              ||||||||||||||||| ||||||
Sbjct: 103274 gttgctgaagctcctggcttctct 103297



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 412   gttgctgaagctcctggtttctct 435
             ||||||||||||||||| ||||||
Sbjct: 60563 gttgctgaagctcctggcttctct 60540
to top
>emb|BX088546.7| Mouse DNA sequence from clone RP23-96D6 on chromosome X, complete
             sequence
          Length = 109456

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 587   cttttcataagcctccagtactat 610
             ||||||||||||||||||| ||||
Sbjct: 33508 cttttcataagcctccagtcctat 33531
to top
>gb|AC002112.1|AC002112 Genomic sequence from Human 6, complete sequence
          Length = 115967

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 405   tgctttagttgctgaagctc 424
             ||||||||||||||||||||
Sbjct: 58195 tgctttagttgctgaagctc 58214
to top
>emb|AL772291.9| Mouse DNA sequence from clone RP23-395G1 on chromosome 4, complete
             sequence
          Length = 222046

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   tctctcgtcatgctccttct 450
             ||||||||||||||||||||
Sbjct: 21483 tctctcgtcatgctccttct 21502
to top
>gb|AC087362.13| Homo sapiens chromosome 8, clone RP11-513D5, complete sequence
          Length = 142170

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 480    ttaagaatagtattttcttt 499
              ||||||||||||||||||||
Sbjct: 140213 ttaagaatagtattttcttt 140194
to top
>gb|AC165250.2| Mus musculus BAC clone RP24-209D3 from chromosome 13, complete
            sequence
          Length = 173581

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 37   ctacttactttcaaacttataaca 60
            |||||||||||||||| |||||||
Sbjct: 1279 ctacttactttcaaacatataaca 1256


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,345,969
Number of Sequences: 3902068
Number of extensions: 7345969
Number of successful extensions: 158520
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 158237
Number of HSP's gapped (non-prelim): 275
length of query: 715
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 692
effective length of database: 17,143,297,704
effective search space: 11863162011168
effective search space used: 11863162011168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top