ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26d17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465528.1| Oryza sativa (japonica cultivar-group), mRNA 254 1e-64
2dbj|AK070377.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 1e-64
3gb|AY110121.1| Zea mays CL7385_1 mRNA sequence 149 6e-33
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 121 1e-24
5dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic D... 121 1e-24
6dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic D... 121 1e-24
7ref|XM_471716.1| Oryza sativa (japonica cultivar-group), predic... 111 1e-21
8gb|AF338431.1|AF338431 Aegilops tauschii starch branching enzyme... 42 1.0
9ref|XM_224299.3| PREDICTED: Rattus norvegicus similar to RIKEN c... 42 1.0
10gb|AC113509.14| Mus musculus chromosome 1, clone RP23-377L11, co... 40 4.1
11gb|AC120366.9| Mus musculus chromosome 1, clone RP24-294P1, comp... 40 4.1
12emb|CR974574.10| Pig DNA sequence from clone CH242-93P8 on chrom... 40 4.1
13gb|AC126028.4| Mus musculus BAC clone RP24-542M6 from chromosome... 40 4.1
14gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome III BAC... 40 4.1
15gb|AC154722.2| Mus musculus BAC clone RP24-371J2 from chromosome... 40 4.1
16emb|CR956634.3| Pig DNA sequence from clone CH242-277I8 on chrom... 40 4.1
17emb|BX890620.9| Zebrafish DNA sequence from clone DKEY-48C14 in ... 40 4.1
18gb|AC108860.14| Homo sapiens chromosome 8, clone RP11-22C11, com... 40 4.1
19dbj|AP005660.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 4.1
20emb|BX927393.12| Zebrafish DNA sequence from clone CH211-231B2 i... 40 4.1
21emb|CT025653.7| Mouse DNA sequence from clone RP23-62D21 on chro... 40 4.1
22gb|AC144632.4| Mus musculus BAC clone RP23-106G16 from chromosom... 40 4.1
23emb|AL929503.4| Zebrafish DNA sequence from clone CH211-158I6, c... 40 4.1
24emb|AL731713.8| Mouse DNA sequence from clone RP23-32L9 on chrom... 40 4.1
25dbj|AP004218.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 4.1 
>ref|XM_465528.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1268

 Score =  254 bits (128), Expect = 1e-64
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                       
Query: 4   gcttcctttctttagggtaccaccgggtgcacaaagccatgatactgctcacatcaacaa 63
           ||||||||||||| |||||||| | | ||||||||||||| |||||||||||||||||||
Sbjct: 848 gcttcctttctttggggtaccatctgatgcacaaagccattatactgctcacatcaacaa 789

                                                                       
Query: 64  tcacgtgagagaagatggctgcaagctgtggcatatacttctttagaaatagtaaatcta 123
           | |||||||||||||||||||||||||| |||||||| ||||| | |||||||||||| |
Sbjct: 788 taacgtgagagaagatggctgcaagctgcggcatataattcttcaaaaatagtaaatcca 729

                                                                       
Query: 124 cgtaaactgaattcccagctattgatggagtgcctgaacctacatgcttcatgaggaagt 183
           | ||||| ||||||||||||||| ||||||    |||||| ||||||||| | |  || |
Sbjct: 728 cataaacagaattcccagctattaatggaggagatgaaccaacatgcttcttaacaaaat 669

                                                                       
Query: 184 ctaacacctgtttctccgcgtcaccctcanaaatctcactctgtantactctctctgtca 243
           ||||||| ||| |||| ||||||  |||  |||||  |||||||| |||||||| |||||
Sbjct: 668 ctaacacttgtgtctctgcgtcatgctctgaaatcgtactctgtagtactctctgtgtca 609

                                                            
Query: 244 atccactanatgcatgatgggttttacaccattcattcatattatctaa 292
           ||||||||  ||||||||| ||||| |||||||||| ||| ||||||||
Sbjct: 608 atccactagctgcatgatgagttttgcaccattcatccatgttatctaa 560
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>dbj|AK070377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054H24, full
           insert sequence
          Length = 1268

 Score =  254 bits (128), Expect = 1e-64
 Identities = 248/289 (85%)
 Strand = Plus / Minus

                                                                       
Query: 4   gcttcctttctttagggtaccaccgggtgcacaaagccatgatactgctcacatcaacaa 63
           ||||||||||||| |||||||| | | ||||||||||||| |||||||||||||||||||
Sbjct: 848 gcttcctttctttggggtaccatctgatgcacaaagccattatactgctcacatcaacaa 789

                                                                       
Query: 64  tcacgtgagagaagatggctgcaagctgtggcatatacttctttagaaatagtaaatcta 123
           | |||||||||||||||||||||||||| |||||||| ||||| | |||||||||||| |
Sbjct: 788 taacgtgagagaagatggctgcaagctgcggcatataattcttcaaaaatagtaaatcca 729

                                                                       
Query: 124 cgtaaactgaattcccagctattgatggagtgcctgaacctacatgcttcatgaggaagt 183
           | ||||| ||||||||||||||| ||||||    |||||| ||||||||| | |  || |
Sbjct: 728 cataaacagaattcccagctattaatggaggagatgaaccaacatgcttcttaacaaaat 669

                                                                       
Query: 184 ctaacacctgtttctccgcgtcaccctcanaaatctcactctgtantactctctctgtca 243
           ||||||| ||| |||| ||||||  |||  |||||  |||||||| |||||||| |||||
Sbjct: 668 ctaacacttgtgtctctgcgtcatgctctgaaatcgtactctgtagtactctctgtgtca 609

                                                            
Query: 244 atccactanatgcatgatgggttttacaccattcattcatattatctaa 292
           ||||||||  ||||||||| ||||| |||||||||| ||| ||||||||
Sbjct: 608 atccactagctgcatgatgagttttgcaccattcatccatgttatctaa 560
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>gb|AY110121.1| Zea mays CL7385_1 mRNA sequence
          Length = 975

 Score =  149 bits (75), Expect = 6e-33
 Identities = 117/131 (89%)
 Strand = Plus / Plus

                                                                       
Query: 31  tgcacaaagccatgatactgctcacatcaacaatcacgtgagagaagatggctgcaagct 90
           |||| |||||||| |||||||||||||| ||||| || |||||||||| |||||||||||
Sbjct: 474 tgcataaagccattatactgctcacatcgacaattacatgagagaagacggctgcaagct 533

                                                                       
Query: 91  gtggcatatacttctttagaaatagtaaatctacgtaaactgaattcccagctattgatg 150
           ||||||| |||||||| |||||||| ||||| || ||||| ||||||||||||| | |||
Sbjct: 534 gtggcatgtacttcttcagaaatagaaaatccacataaacagaattcccagctaataatg 593

                      
Query: 151 gagtgcctgaa 161
           |||||||||||
Sbjct: 594 gagtgcctgaa 604



 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                       
Query: 219 tcactctgtantactctctctgtcaatccactanatgcatgatgggttttacaccattca 278
           |||||||| | |||||| || ||||| ||||||  ||||||||| ||||| |||||||||
Sbjct: 663 tcactctgcagtactctttccgtcaaaccactagctgcatgatgagttttgcaccattca 722

                                        
Query: 279 ttcatattatctaagcaagctttgctctg 307
           | |||||||||||| ||| ||||||||||
Sbjct: 723 tccatattatctaaacaatctttgctctg 751
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  121 bits (61), Expect = 1e-24
 Identities = 85/93 (91%)
 Strand = Plus / Plus

                                                                            
Query: 13       ctttagggtaccaccgggtgcacaaagccatgatactgctcacatcaacaatcacgtgag 72
                |||| |||||||| | | ||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 15751554 ctttggggtaccatctgatgcacaaagccattatactgctcacatcaacaataacgtgag 15751613

                                                 
Query: 73       agaagatggctgcaagctgtggcatatacttct 105
                ||||||||||||||||||| |||||||| ||||
Sbjct: 15751614 agaagatggctgcaagctgcggcatataattct 15751646



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 110      aaatagtaaatctacgtaaactgaattcccagctattgatggag 153
                |||||||||||| || ||||| ||||||||||||||| ||||||
Sbjct: 15751973 aaatagtaaatccacataaacagaattcccagctattaatggag 15752016
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>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1342_D02
          Length = 125460

 Score =  121 bits (61), Expect = 1e-24
 Identities = 85/93 (91%)
 Strand = Plus / Plus

                                                                        
Query: 13   ctttagggtaccaccgggtgcacaaagccatgatactgctcacatcaacaatcacgtgag 72
            |||| |||||||| | | ||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 9494 ctttggggtaccatctgatgcacaaagccattatactgctcacatcaacaataacgtgag 9553

                                             
Query: 73   agaagatggctgcaagctgtggcatatacttct 105
            ||||||||||||||||||| |||||||| ||||
Sbjct: 9554 agaagatggctgcaagctgcggcatataattct 9586



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                        
Query: 110  aaatagtaaatctacgtaaactgaattcccagctattgatggag 153
            |||||||||||| || ||||| ||||||||||||||| ||||||
Sbjct: 9913 aaatagtaaatccacataaacagaattcccagctattaatggag 9956
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>dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0035A24
          Length = 176446

 Score =  121 bits (61), Expect = 1e-24
 Identities = 85/93 (91%)
 Strand = Plus / Plus

                                                                          
Query: 13     ctttagggtaccaccgggtgcacaaagccatgatactgctcacatcaacaatcacgtgag 72
              |||| |||||||| | | ||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 160241 ctttggggtaccatctgatgcacaaagccattatactgctcacatcaacaataacgtgag 160300

                                               
Query: 73     agaagatggctgcaagctgtggcatatacttct 105
              ||||||||||||||||||| |||||||| ||||
Sbjct: 160301 agaagatggctgcaagctgcggcatataattct 160333



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                          
Query: 110    aaatagtaaatctacgtaaactgaattcccagctattgatggag 153
              |||||||||||| || ||||| ||||||||||||||| ||||||
Sbjct: 160660 aaatagtaaatccacataaacagaattcccagctattaatggag 160703
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>ref|XM_471716.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 750

 Score =  111 bits (56), Expect = 1e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                       
Query: 6   ttcctttctttagggtaccaccgggtgcacaaagccatgatactgctcacatcaacaatc 65
           ||||||||||| ||| |||| |||| ||||||||||   |||||||| |||||||| |||
Sbjct: 638 ttcctttctttggggaaccatcgggagcacaaagccgatatactgcttacatcaactatc 579

                                                                       
Query: 66  acgtgagagaagatggctgcaagctgtggcatatacttctttagaaatagtaaatctacg 125
           || |||||||| |||||||| || |||||||| |||||||| | |||||||||||| |  
Sbjct: 578 acatgagagaaaatggctgccagatgtggcatgtacttcttcaaaaatagtaaatccata 519

                               
Query: 126 taaactgaattcccagctat 145
           || || ||||||||||||||
Sbjct: 518 tagacagaattcccagctat 499
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>gb|AF338431.1|AF338431 Aegilops tauschii starch branching enzyme IIa gene, complete cds
          Length = 11475

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 271   accattcattcatattatcta 291
             |||||||||||||||||||||
Sbjct: 10745 accattcattcatattatcta 10765
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>ref|XM_224299.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933425F03
            (predicted) (LOC305974), mRNA
          Length = 2138

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 73   agaagatggctgcaagctgtg 93
            |||||||||||||||||||||
Sbjct: 1680 agaagatggctgcaagctgtg 1660
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>gb|AC113509.14| Mus musculus chromosome 1, clone RP23-377L11, complete sequence
          Length = 193588

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 291    aagcaagctttgctctgact 310
              ||||||||||||||||||||
Sbjct: 186092 aagcaagctttgctctgact 186111
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>gb|AC120366.9| Mus musculus chromosome 1, clone RP24-294P1, complete sequence
          Length = 156784

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    aagcaagctttgctctgact 310
              ||||||||||||||||||||
Sbjct: 130946 aagcaagctttgctctgact 130927
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>emb|CR974574.10| Pig DNA sequence from clone CH242-93P8 on chromosome 7, complete
             sequence
          Length = 66478

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    tggctgcaagctgtggcata 98
             ||||||||||||||||||||
Sbjct: 51850 tggctgcaagctgtggcata 51831
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>gb|AC126028.4| Mus musculus BAC clone RP24-542M6 from chromosome 15, complete sequence
          Length = 168344

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     actgctcacatcaacaatca 66
              ||||||||||||||||||||
Sbjct: 143724 actgctcacatcaacaatca 143743
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>gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome III BAC T1B9 genomic sequence, complete
             sequence
          Length = 99128

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   tcatattatctaagcaagct 299
             ||||||||||||||||||||
Sbjct: 63808 tcatattatctaagcaagct 63827
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>gb|AC154722.2| Mus musculus BAC clone RP24-371J2 from chromosome 9, complete sequence
          Length = 186951

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 291    aagcaagctttgctctgact 310
              ||||||||||||||||||||
Sbjct: 138376 aagcaagctttgctctgact 138395
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>emb|CR956634.3| Pig DNA sequence from clone CH242-277I8 on chromosome 17, complete
             sequence
          Length = 206278

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    tggctgcaagctgtggcata 98
             ||||||||||||||||||||
Sbjct: 58072 tggctgcaagctgtggcata 58091
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>emb|BX890620.9| Zebrafish DNA sequence from clone DKEY-48C14 in linkage group 14,
             complete sequence
          Length = 214857

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 262   gggttttacaccattcattcatattatc 289
             ||||||||||| |||||||||| |||||
Sbjct: 39566 gggttttacacaattcattcatgttatc 39539
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>gb|AC108860.14| Homo sapiens chromosome 8, clone RP11-22C11, complete sequence
          Length = 103481

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 217   tctcactctgtantactctctctgtca 243
             |||||||||||| | ||||||||||||
Sbjct: 52486 tctcactctgtaatcctctctctgtca 52460
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>dbj|AP005660.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1090H4, complete
             sequence
          Length = 161970

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 217   tctcactctgtantactctctctgtca 243
             |||||||||||| | ||||||||||||
Sbjct: 26934 tctcactctgtaatcctctctctgtca 26908
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>emb|BX927393.12| Zebrafish DNA sequence from clone CH211-231B2 in linkage group 1,
             complete sequence
          Length = 152923

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   cattcattcatattatctaa 292
             ||||||||||||||||||||
Sbjct: 12688 cattcattcatattatctaa 12707
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>emb|CT025653.7| Mouse DNA sequence from clone RP23-62D21 on chromosome 9, complete
             sequence
          Length = 256470

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   aagcaagctttgctctgact 310
             ||||||||||||||||||||
Sbjct: 21354 aagcaagctttgctctgact 21373
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>gb|AC144632.4| Mus musculus BAC clone RP23-106G16 from chromosome 15, complete sequence
          Length = 206265

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     actgctcacatcaacaatca 66
              ||||||||||||||||||||
Sbjct: 159586 actgctcacatcaacaatca 159567
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>emb|AL929503.4| Zebrafish DNA sequence from clone CH211-158I6, complete sequence
          Length = 174012

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 262    gggttttacaccattcattcatattatc 289
              ||||||||||| |||||||||| |||||
Sbjct: 171136 gggttttacacaattcattcatgttatc 171163
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>emb|AL731713.8| Mouse DNA sequence from clone RP23-32L9 on chromosome 2, complete
              sequence
          Length = 219076

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    gttttacaccattcattcat 283
              ||||||||||||||||||||
Sbjct: 134404 gttttacaccattcattcat 134423
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>dbj|AP004218.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1198A1
          Length = 195623

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 217    tctcactctgtantactctctctgtca 243
              |||||||||||| | ||||||||||||
Sbjct: 187306 tctcactctgtaatcctctctctgtca 187280


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,462,515
Number of Sequences: 3902068
Number of extensions: 3462515
Number of successful extensions: 48048
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47986
Number of HSP's gapped (non-prelim): 60
length of query: 311
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 289
effective length of database: 17,147,199,772
effective search space: 4955540734108
effective search space used: 4955540734108
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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