ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25o16 |
|---|---|
| Clone Library Name | barley_pub |
>RNF38_MOUSE (Q8BI21) RING finger protein 38| Length = 518 Score = 32.7 bits (73), Expect = 0.89 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = +3 Query: 336 RKPQSIKKNHQIIQTEE----GIMYFSPSLQRQQPRRGRAHKHHSSGRGDHIHHTPLLRA 503 R+P S++ N E SP ++RQ+ RR R +H+S + ++ HH P + Sbjct: 96 RQPPSVRPNQHHFSGERCNTPARNRRSPPVRRQRGRRERLSRHNSISQDENYHHLPYAQQ 155 Query: 504 DLGPAPR 524 PR Sbjct: 156 QAIEEPR 162
>RNF38_HUMAN (Q9H0F5) RING finger protein 38| Length = 515 Score = 32.7 bits (73), Expect = 0.89 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 402 SPSLQRQQPRRGRAHKHHSSGRGDHIHHTPLLRADLGPAPR 524 SP ++RQ+ RR R +H+S + ++ HH P + PR Sbjct: 119 SPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPR 159
>SYH_MYCHJ (Q4AA96) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 428 Score = 32.7 bits (73), Expect = 0.89 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = +3 Query: 363 HQIIQTEEGIMYFSPSLQRQQPRRGRAHKHHSSG 464 H++ QTE+ YF P + + P++GR + + +G Sbjct: 95 HKLFQTEKKFFYFGPMFRYENPQKGRFRQFYQAG 128
>SYH_MYCH7 (Q4A8C3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 428 Score = 32.7 bits (73), Expect = 0.89 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = +3 Query: 363 HQIIQTEEGIMYFSPSLQRQQPRRGRAHKHHSSG 464 H++ QTE+ YF P + + P++GR + + +G Sbjct: 95 HKLFQTEKKFFYFGPMFRYENPQKGRFRQFYQAG 128
>SYH_MYCH2 (Q601R3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 428 Score = 32.7 bits (73), Expect = 0.89 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = +3 Query: 363 HQIIQTEEGIMYFSPSLQRQQPRRGRAHKHHSSG 464 H++ QTE+ YF P + + P++GR + + +G Sbjct: 95 HKLFQTEKKFFYFGPMFRYENPQKGRFRQFYQAG 128
>RS6E_ARCFU (O29739) 30S ribosomal protein S6e| Length = 129 Score = 32.0 bits (71), Expect = 1.5 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = -2 Query: 191 FPMRVISPELLGAVRRRLTLTGSVGGWP-HRAQQWRRGLSGASFS 60 FPMR P+L G RRRL L+G VG P + + R+G+ G S Sbjct: 61 FPMR---PDLPGTARRRLLLSGGVGFRPKEKGLRKRKGVRGRVIS 102
>GLIS1_HUMAN (Q8NBF1) Zinc finger protein GLIS1 (GLI-similar 1)| Length = 620 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = +1 Query: 49 GRSPENEAPDSPRRHCCAR*GHPPTLPVSVKRRRTAPSNSGDITRIGKS 195 G PE P+ + CC G PPT P S ++P S D+T I +S Sbjct: 50 GLQPETHLPEGSLKRCCVL-GLPPTSPAS-----SSPCASSDVTSIIRS 92
>HYPB_AZOVI (P31880) Hydrogenase nickel incorporation protein hypB| Length = 303 Score = 31.2 bits (69), Expect = 2.6 Identities = 20/52 (38%), Positives = 22/52 (42%) Frame = +3 Query: 447 KHHSSGRGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSEQTAAVRRCPG 602 +HH G H H P +R PAP AA GGP L Q A PG Sbjct: 17 EHHHHGHDHHHHEHPFVRR---PAPAEAAPPA-AGGPNLHFGQGPARAHAPG 64
>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 624 Score = 31.2 bits (69), Expect = 2.6 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +3 Query: 414 QRQQPRRGRAHKHHSSGRGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSEQ 575 +++ RRG H HH GR H HH R DLG + S P+ +S + Sbjct: 520 RQRHRRRGSHHHHHHPGR--HGHH----RCDLGSGSDSGSCSSSPSSPSSESSE 567
>GSH2_MOUSE (P31316) Homeobox protein GSH-2| Length = 305 Score = 30.4 bits (67), Expect = 4.4 Identities = 24/75 (32%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Frame = +3 Query: 399 FSPSLQRQQ--PRRGRAHKHHSSGRGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSE 572 FSP+ Q PR AH HH + H HH P A AAA+ Sbjct: 109 FSPAPGDAQFCPRVSHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAA----------- 157 Query: 573 QTAAVRRCPGAQHHA 617 AA QHHA Sbjct: 158 -AAAAAALGHPQHHA 171
>SDC3_CAEEL (P34706) Zinc finger protein sdc-3| Length = 2150 Score = 30.4 bits (67), Expect = 4.4 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 5/96 (5%) Frame = +1 Query: 115 PPTLPVSVKRRRTAPSNSGDITRIGKSITKH*FCLIFVLPVIWRLTAFLHIICEH----- 279 PP++ K R P D+ ++ K + K FC I V P +R L + Sbjct: 192 PPSVVHHSKIRPATP----DLLKLAKYLGKDRFCFI-VTPFKFRSQFRLRYYKKSPFKRS 246 Query: 280 GEMNRWLKHQPKEIHDQGRENLNQSRRIIKSYKQKK 387 + +WLK K++ DQG N+ + R +K Q+K Sbjct: 247 NILEKWLKF--KKVRDQGVFNIRDAAREVKKLLQRK 280
>VNUC_EBOZM (P18272) Nucleoprotein (Nucleocapsid protein)| Length = 739 Score = 30.0 bits (66), Expect = 5.8 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 6/36 (16%) Frame = +3 Query: 135 RQATTNSTKQLRRYNAHREIDH------ETLILFNF 224 R+A T + KQL++Y RE+DH E IL NF Sbjct: 344 REAATEAEKQLQQYAESRELDHLGLDDQEKKILMNF 379
>VNUC_EBOZ5 (O72142) Nucleoprotein (Nucleocapsid protein)| Length = 739 Score = 30.0 bits (66), Expect = 5.8 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 6/36 (16%) Frame = +3 Query: 135 RQATTNSTKQLRRYNAHREIDH------ETLILFNF 224 R+A T + KQL++Y RE+DH E IL NF Sbjct: 344 REAATEAEKQLQQYAESRELDHLGLDDQEKKILMNF 379
>VNUC_EBOG4 (Q9QCE9) Nucleoprotein (Nucleocapsid protein)| Length = 739 Score = 30.0 bits (66), Expect = 5.8 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 6/36 (16%) Frame = +3 Query: 135 RQATTNSTKQLRRYNAHREIDH------ETLILFNF 224 R+A T + KQL++Y RE+DH E IL NF Sbjct: 344 REAATEAEKQLQQYAESRELDHLGLDDQEKKILMNF 379
>SPB4_DEBHA (Q6BSM3) ATP-dependent rRNA helicase SPB4 (EC 3.6.1.-)| Length = 614 Score = 30.0 bits (66), Expect = 5.8 Identities = 20/59 (33%), Positives = 31/59 (52%) Frame = +1 Query: 109 GHPPTLPVSVKRRRTAPSNSGDITRIGKSITKH*FCLIFVLPVIWRLTAFLHIICEHGE 285 G+P PV T P SG+ + +++T L FV+PV+ +L+ L+ I E GE Sbjct: 29 GYPTMTPVQAS---TIPLFSGNKDVVVEAVTGSGKTLAFVIPVLQKLSNRLYNIDEEGE 84
>UVRC_VIBF1 (Q5E4C5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 608 Score = 29.6 bits (65), Expect = 7.6 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 5/75 (6%) Frame = +3 Query: 402 SPSLQRQQPRRGRAHKH----HSSGRGDHIHHTPLLRAD-LGPAPRRAAASRDGGGPALK 566 SP+L Q R +H H H + R + L D +GP R+A GG LK Sbjct: 521 SPALHLIQHIRDESHNHAIGGHRAQRAKVRKTSTLQNIDGVGPKRRQALLQYLGGLQELK 580 Query: 567 SEQTAAVRRCPGAQH 611 S + + PG H Sbjct: 581 SASVEEIAKVPGISH 595
>RAD5_CRYNE (Q5KPG8) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1198 Score = 29.6 bits (65), Expect = 7.6 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%) Frame = +3 Query: 363 HQIIQTEEGIMYFSPSLQRQQ-----PRRGR----AHKHHSSGRGDHIHHTPLLRAD 506 H + + I+ +P+ Q PRR R AH HHSS + P++RAD Sbjct: 78 HDNVDDDFSIVGHNPASSHPQGTIVAPRRKRSLQQAHSHHSSSSSSPVPSAPVIRAD 134
>RS15_METMA (Q8PVA5) 30S ribosomal protein S15P/S13e| Length = 152 Score = 29.6 bits (65), Expect = 7.6 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Frame = +1 Query: 286 MNRWLKHQPKEIHDQGRENLNQS--RRIIKSYKQKKV 390 + + L K++H++ NL +S RR++K YKQ+KV Sbjct: 98 LRKHLSTNKKDVHNKRALNLTESKIRRLVKYYKQEKV 134
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 29.3 bits (64), Expect = 9.9 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 1/112 (0%) Frame = +3 Query: 285 DEQMVEASTERNP*PRKRKPQSIKKNHQIIQTEEGIMYFSPSLQRQQPRRGRAHKHHSSG 464 DE + ER P P R P + + + SP R R + H H S Sbjct: 31 DEDGSRSPGERTPSPPSRDPSPYRSPGERTPSP------SPRRDRSLSPRDQPHSHPRSR 84 Query: 465 RGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSEQTAAVR-RCPGAQHHA 617 +P R+ P+PR+ G PA + +++++ R R P + H+ Sbjct: 85 SPTPRSQSPSRRSVRSPSPRQ-------GSPARRVDRSSSPRARSPPPRRHS 129
>GSH2_HUMAN (Q9BZM3) Homeobox protein GSH-2| Length = 304 Score = 29.3 bits (64), Expect = 9.9 Identities = 20/64 (31%), Positives = 22/64 (34%) Frame = +3 Query: 426 PRRGRAHKHHSSGRGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSEQTAAVRRCPGA 605 PR AH HH + H HH P A AAA+ AA Sbjct: 120 PRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAA-------------AAAAALGHP 166 Query: 606 QHHA 617 QHHA Sbjct: 167 QHHA 170
>RS15_METAC (Q8TS56) 30S ribosomal protein S15P/S13e| Length = 152 Score = 29.3 bits (64), Expect = 9.9 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Frame = +1 Query: 286 MNRWLKHQPKEIHDQGRENLNQS--RRIIKSYKQKKV 390 + + L K++H++ NL +S RR++K YKQ+KV Sbjct: 98 LRKHLSVNKKDVHNKRSLNLTESKIRRLVKYYKQEKV 134
>WBS14_HUMAN (Q9NP71) Williams-Beuren syndrome chromosome region 14 protein (WS| basic-helix-loop-helix leucine zipper protein) (WS-bHLH) (Mlx interactor) (MLX-interacting protein-like) Length = 852 Score = 29.3 bits (64), Expect = 9.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 81 PTAPLLRPVRPPSHATRQRQATTNSTKQLRRYN 179 P P+L RP S+ T R+ T S +Q RR+N Sbjct: 632 PPQPILSRGRPDSNKTENRRITHISAEQKRRFN 664 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,709,444 Number of Sequences: 219361 Number of extensions: 1804298 Number of successful extensions: 6229 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5882 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6208 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
