ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25o16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL078591.18|HSDJ198I9 Human DNA sequence from clone RP1-198I... 46 0.14
2gb|AC104920.10| Mus musculus chromosome 10, clone RP23-360H23, c... 44 0.54
3gb|AC098887.4| Mus musculus BAC clone RP23-122N6 from 10, comple... 44 0.54
4gb|AC165226.3| Sorex araneus, clone XX-26483857F19, complete seq... 42 2.2
5gb|U97004.2| Caenorhabditis elegans cosmid R08E5, complete sequence 42 2.2
6gb|AC122244.5| Mus musculus BAC clone RP23-149I9 from chromosome... 42 2.2
7gb|AC011248.8| Homo sapiens 12 BAC RP11-14P21 (Roswell Park Canc... 42 2.2
8emb|AL360231.16| Human DNA sequence from clone RP11-110H10 on ch... 42 2.2
9gb|AC016587.9| Homo sapiens chromosome 19 clone CTD-2632B17, com... 42 2.2
10gb|AC108930.3| Homo sapiens BAC clone RP11-204C12 from 4, comple... 42 2.2
11ref|NM_071644.2| Caenorhabditis elegans R08E5.3 (R08E5.3) mRNA, ... 42 2.2
12gb|AC078846.2|AC078846 Homo sapiens chromosome 7 clone RP11-448A... 42 2.2
13gb|AC147282.3| Pan troglodytes BAC clone RP43-86L11 from chromos... 42 2.2
14gb|AC145873.3| Pan troglodytes BAC clone RP43-20K16 from chromos... 42 2.2
15emb|BX005052.6| Zebrafish DNA sequence from clone CH211-42O7 in ... 42 2.2
16gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BAC T2P... 42 2.2
17gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 8.5
18ref|XM_479616.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.5
19ref|NM_001004362.1| Mus musculus RIKEN cDNA 2610008E11 gene (261... 40 8.5
20gb|BC082302.1| Mus musculus RIKEN cDNA 2610008E11 gene, mRNA (cD... 40 8.5
21gb|AC115360.6| Mus musculus BAC clone RP23-191N22 from chromosom... 40 8.5
22emb|CR628410.11| Zebrafish DNA sequence from clone CH211-198D23 ... 40 8.5
23gb|AC124394.4| Mus musculus BAC clone RP24-335M3 from chromosome... 40 8.5
24emb|CR376849.29| Zebrafish DNA sequence from clone CH211-145A9 i... 40 8.5
25gb|AC125456.4| Mus musculus BAC clone RP24-193M20 from chromosom... 40 8.5
26gb|AC127431.1| Mus musculus BAC clone RP24-481H21 from 7, comple... 40 8.5
27gb|AC110240.8| Mus musculus chromosome 3, clone RP23-113O9, comp... 40 8.5
28ref|XM_724400.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 8.5
29gb|AC164638.4| Mus musculus BAC clone RP23-198N12 from chromosom... 40 8.5
30emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 40 8.5
31emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 40 8.5
32emb|BX640429.1| Bordetella parapertussis strain 12822, complete ... 40 8.5
33gb|AC135329.12| Homo sapiens chromosome 15, clone RP11-1365A12, ... 40 8.5
34gb|AC157780.9| Mus musculus chromosome 3, clone RP23-331L5, comp... 40 8.5
35gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytans... 40 8.5
36dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 8.5
37gb|AF154043.2| Streptococcus pneumoniae strain srf15 surface pro... 40 8.5
38gb|AF154034.1| Streptococcus pneumoniae strain g54 surface prote... 40 8.5
39gb|AF154019.1| Streptococcus pneumoniae strain g385 surface prot... 40 8.5
40dbj|AK148309.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-len... 40 8.5
41gb|AC080172.5| Homo sapiens chromosome 11, clone CTC-790M5, comp... 40 8.5
42gb|AC073648.7| Homo sapiens BAC clone RP11-747H12 from 4, comple... 40 8.5
43gb|AC161814.2| Mus musculus BAC clone RP24-120E13 from chromosom... 40 8.5
44dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
45dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
46emb|BX813381.1|CNS0ADZJ Arabidopsis thaliana Full-length cDNA Co... 40 8.5
47gb|AC154553.3| Mus musculus BAC clone RP23-416K11 from chromosom... 40 8.5
48ref|NM_174447.2| Bos taurus RAB3B, member RAS oncogene family (R... 40 8.5
49gb|AC114772.5| Homo sapiens BAC clone RP11-427H3 from 2, complet... 40 8.5
50gb|AF225404.1|AF225400S05 Homo sapiens HERC2 (HERC2) gene, exon ... 40 8.5
51gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome 40 8.5
52dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
53gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, co... 40 8.5
54dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
55gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis tha... 40 8.5
56emb|BX005217.5| Zebrafish DNA sequence from clone CH211-87L3 in ... 40 8.5
57emb|AL805974.8| Mouse DNA sequence from clone RP23-334F21 on chr... 40 8.5
58dbj|AK108769.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.5
59dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
60gb|AC101774.6| Mus musculus chromosome 19, clone RP24-113J17, co... 40 8.5
61dbj|AP002444.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.5
62gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 8.5
63dbj|AP006368.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 8.5
64gb|M19886.1|BOVBPGTPB Bovine GTP-binding protein (smg p25B) mRNA... 40 8.5
65gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 8.5
66emb|AL627347.10| Mouse DNA sequence from clone RP23-120A10 on ch... 40 8.5 
>emb|AL078591.18|HSDJ198I9 Human DNA sequence from clone RP1-198I9 on chromosome 6q12-13 Contains
             the 3' end of a novel gene (KIAA1411, FLJ20176, FLJ11049),
             complete sequence
          Length = 144649

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 206   actaattttgtttaatttttgtt 228
             |||||||||||||||||||||||
Sbjct: 78243 actaattttgtttaatttttgtt 78265
to top
>gb|AC104920.10| Mus musculus chromosome 10, clone RP23-360H23, complete sequence
          Length = 212273

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 239    tctggagattaactgcttttct 260
              ||||||||||||||||||||||
Sbjct: 157627 tctggagattaactgcttttct 157648
to top
>gb|AC098887.4| Mus musculus BAC clone RP23-122N6 from 10, complete sequence
          Length = 211397

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 239    tctggagattaactgcttttct 260
              ||||||||||||||||||||||
Sbjct: 211200 tctggagattaactgcttttct 211179
to top
>gb|AC165226.3| Sorex araneus, clone XX-26483857F19, complete sequence
          Length = 39750

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 208   taattttgtttaatttttgtt 228
             |||||||||||||||||||||
Sbjct: 16636 taattttgtttaatttttgtt 16656
to top
>gb|U97004.2| Caenorhabditis elegans cosmid R08E5, complete sequence
          Length = 8163

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 208  taattttgtttaatttttgtt 228
            |||||||||||||||||||||
Sbjct: 5613 taattttgtttaatttttgtt 5633
to top
>gb|AC122244.5| Mus musculus BAC clone RP23-149I9 from chromosome 10, complete sequence
          Length = 187474

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 332   gaagagaaaacctcaatcaat 352
             |||||||||||||||||||||
Sbjct: 95872 gaagagaaaacctcaatcaat 95892
to top
>gb|AC011248.8| Homo sapiens 12 BAC RP11-14P21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 111312

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 207   ctaattttgtttaatttttgt 227
             |||||||||||||||||||||
Sbjct: 69281 ctaattttgtttaatttttgt 69261
to top
>emb|AL360231.16| Human DNA sequence from clone RP11-110H10 on chromosome 10 Contains the
              5' end of the CACNB2 gene for calcium channel
              voltage-dependent beta 2 subunit, the 3' end of a novel
              gene (FLJ30499), the 5' end of a novel gene (FLJ30450) and
              CpG island, complete sequence
          Length = 154244

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 251    ctgcttttctgcacataatat 271
              |||||||||||||||||||||
Sbjct: 130026 ctgcttttctgcacataatat 130006
to top
>gb|AC016587.9| Homo sapiens chromosome 19 clone CTD-2632B17, complete sequence
          Length = 155221

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 207   ctaattttgtttaatttttgt 227
             |||||||||||||||||||||
Sbjct: 67793 ctaattttgtttaatttttgt 67773
to top
>gb|AC108930.3| Homo sapiens BAC clone RP11-204C12 from 4, complete sequence
          Length = 72790

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 202   aaacactaattttgtttaatt 222
             |||||||||||||||||||||
Sbjct: 32088 aaacactaattttgtttaatt 32068
to top
>ref|NM_071644.2| Caenorhabditis elegans R08E5.3 (R08E5.3) mRNA, complete cds
          Length = 1472

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 208  taattttgtttaatttttgtt 228
            |||||||||||||||||||||
Sbjct: 1256 taattttgtttaatttttgtt 1276
to top
>gb|AC078846.2|AC078846 Homo sapiens chromosome 7 clone RP11-448A19, complete sequence
          Length = 219428

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 206   actaattttgtttaatttttg 226
             |||||||||||||||||||||
Sbjct: 10200 actaattttgtttaatttttg 10220
to top
>gb|AC147282.3| Pan troglodytes BAC clone RP43-86L11 from chromosome 7, complete sequence
          Length = 223086

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 206    actaattttgtttaatttttg 226
              |||||||||||||||||||||
Sbjct: 126768 actaattttgtttaatttttg 126788
to top
>gb|AC145873.3| Pan troglodytes BAC clone RP43-20K16 from chromosome 7, complete sequence
          Length = 149916

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 206    actaattttgtttaatttttg 226
              |||||||||||||||||||||
Sbjct: 109954 actaattttgtttaatttttg 109934
to top
>emb|BX005052.6| Zebrafish DNA sequence from clone CH211-42O7 in linkage group 15,
             complete sequence
          Length = 177681

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   ttttgtttaatttttgttctt 231
             |||||||||||||||||||||
Sbjct: 21903 ttttgtttaatttttgttctt 21923
to top
>gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete
             sequence
          Length = 85372

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 208   taattttgtttaatttttgtt 228
             |||||||||||||||||||||
Sbjct: 40775 taattttgtttaatttttgtt 40755
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 422     gcaacctcgtcgaggacgcgcgca 445
               |||||||||||||| |||||||||
Sbjct: 2304518 gcaacctcgtcgagaacgcgcgca 2304541
to top
>ref|XM_479616.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2019

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 349 caatcaagaagaatcatcaa 368
           ||||||||||||||||||||
Sbjct: 389 caatcaagaagaatcatcaa 408
to top
>ref|NM_001004362.1| Mus musculus RIKEN cDNA 2610008E11 gene (2610008E11Rik), mRNA
          Length = 4202

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 atgaacagatggttgaagca 305
           ||||||||||||||||||||
Sbjct: 492 atgaacagatggttgaagca 511
to top
>gb|BC082302.1| Mus musculus RIKEN cDNA 2610008E11 gene, mRNA (cDNA clone MGC:90797
           IMAGE:6838422), complete cds
          Length = 4202

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 atgaacagatggttgaagca 305
           ||||||||||||||||||||
Sbjct: 492 atgaacagatggttgaagca 511
to top
>gb|AC115360.6| Mus musculus BAC clone RP23-191N22 from chromosome 19, complete sequence
          Length = 217325

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    aattttgtttaatttttgtt 228
              ||||||||||||||||||||
Sbjct: 210144 aattttgtttaatttttgtt 210125
to top
>emb|CR628410.11| Zebrafish DNA sequence from clone CH211-198D23 in linkage group 23,
              complete sequence
          Length = 172610

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 487    cgccgctcctccgagcggac 506
              ||||||||||||||||||||
Sbjct: 145457 cgccgctcctccgagcggac 145438
to top
>gb|AC124394.4| Mus musculus BAC clone RP24-335M3 from chromosome 19, complete sequence
          Length = 171122

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 603   gcacagcaccacgcacacct 622
             ||||||||||||||||||||
Sbjct: 46400 gcacagcaccacgcacacct 46419
to top
>emb|CR376849.29| Zebrafish DNA sequence from clone CH211-145A9 in linkage group 11,
              complete sequence
          Length = 147098

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 322    catgaccaaggaagagaaaa 341
              ||||||||||||||||||||
Sbjct: 139946 catgaccaaggaagagaaaa 139965
to top
>gb|AC125456.4| Mus musculus BAC clone RP24-193M20 from chromosome 18, complete
             sequence
          Length = 142347

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   gcttttctgcacataatatg 272
             ||||||||||||||||||||
Sbjct: 69093 gcttttctgcacataatatg 69074
to top
>gb|AC127431.1| Mus musculus BAC clone RP24-481H21 from 7, complete sequence
          Length = 166978

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 208   taattttgtttaatttttgttctt 231
             ||||||||||||| ||||||||||
Sbjct: 41708 taattttgtttaacttttgttctt 41731
to top
>gb|AC110240.8| Mus musculus chromosome 3, clone RP23-113O9, complete sequence
          Length = 237590

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    actaattttgtttaattttt 225
              ||||||||||||||||||||
Sbjct: 151513 actaattttgtttaattttt 151532
to top
>ref|XM_724400.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01698)
           partial mRNA
          Length = 1224

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 208 taattttgtttaatttttgt 227
           ||||||||||||||||||||
Sbjct: 715 taattttgtttaatttttgt 696
to top
>gb|AC164638.4| Mus musculus BAC clone RP23-198N12 from chromosome 7, complete sequence
          Length = 242297

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   taattttgtttaatttttgttctt 231
             ||||||||||||| ||||||||||
Sbjct: 10095 taattttgtttaacttttgttctt 10072
to top
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 587    ccggcgttgccctggcgcac 606
              ||||||||||||||||||||
Sbjct: 165407 ccggcgttgccctggcgcac 165388
to top
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 587    ccggcgttgccctggcgcac 606
              ||||||||||||||||||||
Sbjct: 242615 ccggcgttgccctggcgcac 242634
to top
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14
          Length = 344321

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 587    ccggcgttgccctggcgcac 606
              ||||||||||||||||||||
Sbjct: 188307 ccggcgttgccctggcgcac 188326
to top
>gb|AC135329.12| Homo sapiens chromosome 15, clone RP11-1365A12, complete sequence
          Length = 188766

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   aatcaatcaagaagaatcat 365
             ||||||||||||||||||||
Sbjct: 43169 aatcaatcaagaagaatcat 43150
to top
>gb|AC157780.9| Mus musculus chromosome 3, clone RP23-331L5, complete sequence
          Length = 184569

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 203   aacactaattttgtttaatttttg 226
             |||||||||||| |||||||||||
Sbjct: 57632 aacactaattttttttaatttttg 57609
to top
>gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytansinoid antitumor agent
             ansamitocin biosynthetic gene cluster I, partial sequence
          Length = 82746

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 505   acctcggcccggctcctcgc 524
             ||||||||||||||||||||
Sbjct: 41884 acctcggcccggctcctcgc 41865
to top
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 288     gaacagatggttgaagcatc 307
               ||||||||||||||||||||
Sbjct: 2606029 gaacagatggttgaagcatc 2606048
to top
>gb|AF154043.2| Streptococcus pneumoniae strain srf15 surface protein PspC (pspC)
            gene, pspC-7.4 allele, complete cds
          Length = 6097

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 352  tcaagaagaatcatcaaatc 371
            ||||||||||||||||||||
Sbjct: 4050 tcaagaagaatcatcaaatc 4031
to top
>gb|AF154034.1| Streptococcus pneumoniae strain g54 surface protein PspC (pspC) gene,
            pspC-7.1 allele, complete cds; and IS3-Spn1 putative
            transposase and hypothetical protein genes, complete cds
          Length = 6108

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 352  tcaagaagaatcatcaaatc 371
            ||||||||||||||||||||
Sbjct: 4050 tcaagaagaatcatcaaatc 4031
to top
>gb|AF154019.1| Streptococcus pneumoniae strain g385 surface protein PspC (pspC)
            gene, pspC-7.3 allele, complete cds
          Length = 6099

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 352  tcaagaagaatcatcaaatc 371
            ||||||||||||||||||||
Sbjct: 4052 tcaagaagaatcatcaaatc 4033
to top
>dbj|AK148309.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched
           library, clone:G370085O05 product:hypothetical
           Zn-finger, C2H2 type/KRAB box containing protein, full
           insert sequence
          Length = 1186

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 atgaacagatggttgaagca 305
           ||||||||||||||||||||
Sbjct: 536 atgaacagatggttgaagca 555
to top
>gb|AC080172.5| Homo sapiens chromosome 11, clone CTC-790M5, complete sequence
          Length = 152435

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   agaagaatcatcaaatcata 374
             ||||||||||||||||||||
Sbjct: 72492 agaagaatcatcaaatcata 72473
to top
>gb|AC073648.7| Homo sapiens BAC clone RP11-747H12 from 4, complete sequence
          Length = 180659

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 208   taattttgtttaatttttgttctt 231
             |||||||||||||||||| |||||
Sbjct: 10018 taattttgtttaattttttttctt 10041
to top
>gb|AC161814.2| Mus musculus BAC clone RP24-120E13 from chromosome 17, complete sequence
          Length = 196752

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 322    catgaccaaggaagagaaaa 341
              ||||||||||||||||||||
Sbjct: 131022 catgaccaaggaagagaaaa 131041
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 349      caatcaagaagaatcatcaa 368
                ||||||||||||||||||||
Sbjct: 29416954 caatcaagaagaatcatcaa 29416973
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 479     ccaccacacgccgctcctcc 498
               ||||||||||||||||||||
Sbjct: 6700059 ccaccacacgccgctcctcc 6700078
to top
>emb|BX813381.1|CNS0ADZJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB13ZH10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 2591

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 209 aattttgtttaatttttgtt 228
           ||||||||||||||||||||
Sbjct: 936 aattttgtttaatttttgtt 955
to top
>gb|AC154553.3| Mus musculus BAC clone RP23-416K11 from chromosome 17, complete sequence
          Length = 186842

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 322    catgaccaaggaagagaaaa 341
              ||||||||||||||||||||
Sbjct: 133013 catgaccaaggaagagaaaa 132994
to top
>ref|NM_174447.2| Bos taurus RAB3B, member RAS oncogene family (RAB3B), mRNA
          Length = 735

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 513 ccggctcctcgcagagcagc 532
           ||||||||||||||||||||
Sbjct: 493 ccggctcctcgcagagcagc 512
to top
>gb|AC114772.5| Homo sapiens BAC clone RP11-427H3 from 2, complete sequence
          Length = 163318

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   ttttgtttaatttttgttct 230
             ||||||||||||||||||||
Sbjct: 86799 ttttgtttaatttttgttct 86818
to top
>gb|AF225404.1|AF225400S05 Homo sapiens HERC2 (HERC2) gene, exon 80 and partial cds
          Length = 199

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 aatcaatcaagaagaatcat 365
           ||||||||||||||||||||
Sbjct: 69  aatcaatcaagaagaatcat 50
to top
>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 352     tcaagaagaatcatcaaatc 371
               ||||||||||||||||||||
Sbjct: 1035162 tcaagaagaatcatcaaatc 1035143
to top
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0425F05
          Length = 162858

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 479    ccaccacacgccgctcctcc 498
              ||||||||||||||||||||
Sbjct: 134185 ccaccacacgccgctcctcc 134204
to top
>gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, complete sequence
          Length = 220443

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 325    gaccaaggaagagaaaacctcaat 348
              |||||||||||||||||| |||||
Sbjct: 173753 gaccaaggaagagaaaacatcaat 173776
to top
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0525F01
          Length = 151668

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   ccaccacacgccgctcctcc 498
             ||||||||||||||||||||
Sbjct: 29738 ccaccacacgccgctcctcc 29757
to top
>gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 111686

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   aattttgtttaatttttgtt 228
             ||||||||||||||||||||
Sbjct: 55077 aattttgtttaatttttgtt 55058
to top
>emb|BX005217.5| Zebrafish DNA sequence from clone CH211-87L3 in linkage group 15,
             complete sequence
          Length = 154452

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   tttgtttaatttttgttctt 231
             ||||||||||||||||||||
Sbjct: 84358 tttgtttaatttttgttctt 84377
to top
>emb|AL805974.8| Mouse DNA sequence from clone RP23-334F21 on chromosome X, complete
             sequence
          Length = 95826

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   aattttgtttaatttttgtt 228
             ||||||||||||||||||||
Sbjct: 56348 aattttgtttaatttttgtt 56329
to top
>dbj|AK108769.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H04, full
           insert sequence
          Length = 1709

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 349 caatcaagaagaatcatcaa 368
           ||||||||||||||||||||
Sbjct: 117 caatcaagaagaatcatcaa 136
to top
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0034A04
          Length = 151263

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   caatcaagaagaatcatcaa 368
             ||||||||||||||||||||
Sbjct: 79876 caatcaagaagaatcatcaa 79895
to top
>gb|AC101774.6| Mus musculus chromosome 19, clone RP24-113J17, complete sequence
          Length = 209547

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   aattttgtttaatttttgtt 228
             ||||||||||||||||||||
Sbjct: 89816 aattttgtttaatttttgtt 89835
to top
>dbj|AP002444.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-262A12, complete
             sequence
          Length = 174558

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   agaagaatcatcaaatcata 374
             ||||||||||||||||||||
Sbjct: 93558 agaagaatcatcaaatcata 93577
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 422     gcaacctcgtcgaggacgcgcgca 445
               |||||||||||||| |||||||||
Sbjct: 2370794 gcaacctcgtcgagaacgcgcgca 2370771
to top
>dbj|AP006368.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT21K08, TM0191,
             complete sequence
          Length = 76693

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 201   gaaacactaattttgtttaatttt 224
             |||||||||| |||||||||||||
Sbjct: 12493 gaaacactaaatttgtttaatttt 12470
to top
>gb|M19886.1|BOVBPGTPB Bovine GTP-binding protein (smg p25B) mRNA, complete cds
          Length = 735

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 513 ccggctcctcgcagagcagc 532
           ||||||||||||||||||||
Sbjct: 493 ccggctcctcgcagagcagc 512
to top
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 288     gaacagatggttgaagcatc 307
               ||||||||||||||||||||
Sbjct: 1711020 gaacagatggttgaagcatc 1711001
to top
>emb|AL627347.10| Mouse DNA sequence from clone RP23-120A10 on chromosome 4, complete
             sequence
          Length = 144239

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 334   agagaaaacctcaatcaatcaaga 357
             |||||||||| |||||||||||||
Sbjct: 64776 agagaaaaccacaatcaatcaaga 64753


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,099,479
Number of Sequences: 3902068
Number of extensions: 5099479
Number of successful extensions: 106211
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105874
Number of HSP's gapped (non-prelim): 337
length of query: 624
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 601
effective length of database: 17,143,297,704
effective search space: 10303121920104
effective search space used: 10303121920104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top