ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26d12 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 194 bits (494), Expect = 1e-49 Identities = 98/118 (83%), Positives = 98/118 (83%) Frame = -2 Query: 510 MSACVMXXXXXXXXXXXXLQRSKLGGVRPSARPSLVIXXXXXXXVQTAQPYGPGGGVAFK 331 MSACVM LQRSKLGGVRPSARPSLVI VQTAQPYGPGGGVAFK Sbjct: 1 MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFK 60 Query: 330 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVXVGGKTGLFLWAVT 157 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDV VGGKTGLFLWAVT Sbjct: 61 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 118
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 116 bits (290), Expect = 4e-26 Identities = 52/73 (71%), Positives = 60/73 (82%) Frame = -2 Query: 375 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVX 196 +T +PYG G +A ++GVDASGR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDV Sbjct: 46 KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105 Query: 195 VGGKTGLFLWAVT 157 VGG TGL +WAVT Sbjct: 106 VGGTTGLAIWAVT 118
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 116 bits (290), Expect = 4e-26 Identities = 52/73 (71%), Positives = 60/73 (82%) Frame = -2 Query: 375 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVX 196 +T +PYG G +A ++GVDASGR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDV Sbjct: 46 KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105 Query: 195 VGGKTGLFLWAVT 157 VGG TGL +WAVT Sbjct: 106 VGGTTGLAIWAVT 118
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 115 bits (287), Expect = 1e-25 Identities = 51/73 (69%), Positives = 60/73 (82%) Frame = -2 Query: 375 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVX 196 +T +PYG G ++ ++GVDASGR KGKGVYQF DKYGANVDGYSPIY ++WSPSGDV Sbjct: 44 KTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVY 103 Query: 195 VGGKTGLFLWAVT 157 VGG TGL +WAVT Sbjct: 104 VGGTTGLAIWAVT 116
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 110 bits (276), Expect = 2e-24 Identities = 55/120 (45%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Frame = -2 Query: 510 MSACVMXXXXXXXXXXXXLQRSKLGGVRPSARPS--LVIXXXXXXXVQTAQPYGPGGGVA 337 M+ VM +S + G+ +R S + ++ +P G GGG+ Sbjct: 1 MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60 Query: 336 FKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVXVGGKTGLFLWAVT 157 ++GVD+SGR GKGVYQF DKYGANVDGYSPIY EEW+P+GDV GG TGL +WAVT Sbjct: 61 LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 108 bits (271), Expect = 7e-24 Identities = 58/121 (47%), Positives = 74/121 (61%), Gaps = 3/121 (2%) Frame = -2 Query: 510 MSACVMXXXXXXXXXXXXLQRSKLGGVRPS---ARPSLVIXXXXXXXVQTAQPYGPGGGV 340 M+A VM ++++ G+ PS ARPS I ++T +P+G G + Sbjct: 1 MAASVMLSSVTLKPAGFTVEKTAARGL-PSLTRARPSFKIVASGVKKIKTDKPFGINGSM 59 Query: 339 AFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVXVGGKTGLFLWAV 160 ++GVDASGR KG GVY++ DKYGANVDGYSPIY EWS SGDV GG TGL +WAV Sbjct: 60 DLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAV 119 Query: 159 T 157 T Sbjct: 120 T 120
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 104 bits (259), Expect = 2e-22 Identities = 47/73 (64%), Positives = 56/73 (76%) Frame = -2 Query: 375 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVX 196 +T +P+G G + ++GVDASGR KG GVY+F DKYGANVDGYSPIY +EWS SGDV Sbjct: 49 KTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVY 108 Query: 195 VGGKTGLFLWAVT 157 GG TGL +WAVT Sbjct: 109 KGGVTGLAIWAVT 121
>AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7.11.1)| Length = 799 Score = 33.5 bits (75), Expect = 0.37 Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 9/103 (8%) Frame = +2 Query: 131 APPSRIPA---RVTAQRNSPVFPPTXTSPLGD-----HSSGVYIGLYPSTFAPYLSANW* 286 APP+ +PA V A PV P P+G + P A L+A+W Sbjct: 341 APPAHVPAVPAPVGAPDGGPVRLPGAAVPIGPGPRVADMRAAAVAAPPPESA--LAASWS 398 Query: 287 TPFPLATLPDASTPSLNATPPPG-P*GWAVWTFFAFLATMTND 412 P P D + P+ PP P GW W F M+ND Sbjct: 399 RPRPGVNGADPAVPAPAPAPPEASPAGWRPWRF-----RMSND 436
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 31.2 bits (69), Expect = 1.9 Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 7/82 (8%) Frame = +2 Query: 122 TRRAPPSRIPARVTAQRNSPVFPP--TXTSPLGDHSSGVYIGL----YPSTFAPYLSANW 283 T APPS A T + PP T TSP G + G G PST ++ W Sbjct: 4248 TSTAPPSTPTAPTTTSGGHTLSPPPSTTTSPPGTPTRGTTTGSSSAPTPSTVQTTTTSAW 4307 Query: 284 -*TPFPLATLPDASTPSLNATP 346 TP PL+T T L P Sbjct: 4308 TPTPTPLSTPSIIRTTGLRPYP 4329 Score = 29.6 bits (65), Expect = 5.4 Identities = 23/79 (29%), Positives = 30/79 (37%) Frame = +2 Query: 122 TRRAPPSRIPARVTAQRNSPVFPPTXTSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPL 301 T PP+ P+ T SP T T P S I PS ++ T P Sbjct: 1648 TTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSP-ITTTPSPPTTTMTTPSPTTTPS 1706 Query: 302 ATLPDASTPSLNATPPPGP 358 + + +TPS TP P P Sbjct: 1707 SPITTTTTPSSTTTPSPPP 1725
>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112| Length = 2799 Score = 30.8 bits (68), Expect = 2.4 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +2 Query: 146 IPARVTAQRNSPVFPPTXTSPLGDHSSGVYIGLYPSTFAPYLSA 277 +P + A +P T SPL S+G + +TF+P+LSA Sbjct: 1595 VPTTIMAGIVTPFVGTTAFSPLSSKSTGAISSIPKTTFSPFLSA 1638
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 30.8 bits (68), Expect = 2.4 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Frame = +2 Query: 134 PPSRIPARVTAQRNSPV---FPPTXTSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPLA 304 PP A T SP+ P SP G G+ P + SA+ P PLA Sbjct: 519 PPPSSAAAATGGSPSPIGGLIKPLAGSPTG--------GMPPHHPSRPDSASPPLPLPLA 570 Query: 305 TLPDASTPSLNATPPPG 355 P +P+LN PPG Sbjct: 571 RPPSTPSPTLNPGSPPG 587
>TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) (mTCF-3) Length = 584 Score = 30.4 bits (67), Expect = 3.2 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Frame = +2 Query: 176 SPVFPPTXTSPLGDHSSGVYIGLYPSTFAPYL----SANW*TPFPLATLPDASTPSLNAT 343 SP PPT SP D +G+ +PS +PY A P PL L + + Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSL 259 Query: 344 PPPG 355 PP G Sbjct: 260 PPGG 263
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 30.4 bits (67), Expect = 3.2 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 348 GGVAFKEGVDASGRVAKGKGVYQFADKYGAN 256 GGV +G A+ R+A+G + FADK GA+ Sbjct: 400 GGVRLPDGKGATIRLARGASLADFADKIGAD 430
>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)| Length = 312 Score = 29.6 bits (65), Expect = 5.4 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Frame = -1 Query: 328 RRRCVWKGS---QGEGCLPVCRQVWSKC*WVQPYIHTRRVVSKWRRXCWRKDGAVS-LGS 161 R R ++GS +GEG P+ VW W Q ++ R + +K KD V LG+ Sbjct: 63 RLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNK-------KDAPVDHLGT 115 Query: 160 DSCWNSA 140 + C++S+ Sbjct: 116 EHCYDSS 122
>METX_RALSO (Q8Y3F3) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) (Homoserine transacetylase) (HTA) Length = 403 Score = 29.6 bits (65), Expect = 5.4 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -2 Query: 375 QTAQPYGPGGGVAFKEG-VDASGRVAKGKGVYQFADKYGANVDG 247 QT QPYG V E V+A RVA G+ QFA G ++ G Sbjct: 138 QTGQPYGARFPVVTVEDWVNAQARVADRFGIRQFAAVMGGSLGG 181
>ALB2_PEA (P08688) Albumin-2 (PA2)| Length = 231 Score = 29.6 bits (65), Expect = 5.4 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -2 Query: 345 GVAFKEGVDASGRVAKGKGVYQFADKYGANVD 250 G F+ G+DA+ R +GK VY F A +D Sbjct: 114 GTVFENGIDAAYRSTRGKEVYLFKGDQYARID 145
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 29.6 bits (65), Expect = 5.4 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -2 Query: 327 GVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPS 208 G+ A+GR G F+ ++ G+SP Y+P WSP+ Sbjct: 27 GLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSP-AWSPT 65
>CELR1_MOUSE (O35161) Cadherin EGF LAG seven-pass G-type receptor 1 precursor| Length = 3034 Score = 29.6 bits (65), Expect = 5.4 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = -1 Query: 406 GHSGQEGEEGPDCPTLRAWWWSGVQGRRRCVWKGSQGEGCLPVCRQVWSKC 254 GH GQ E D P + WW + V G C + +G P C + +C Sbjct: 1954 GHYGQYCENKVDLPCPKGWWGNPVCGPCHC----AVSQGFDPDCNKTNGQC 2000
>TF7L1_HUMAN (Q9HCS4) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) Length = 588 Score = 29.3 bits (64), Expect = 7.1 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Frame = +2 Query: 176 SPVFPPTXTSPLGDHSSGVYIGLYPSTFAPYL----SANW*TPFPLATLPDASTPSLNAT 343 SP PPT SP D +G+ +PS +PY A P PL L + + Sbjct: 203 SPGSPPTHLSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSL 262 Query: 344 PPPG 355 PP G Sbjct: 263 PPGG 266
>BCHZ_RHOGE (Q9JPB9) Chlorophyllide reductase subunit Z (EC 1.18.-.-) (Chlorin| reductase subunit Z) Length = 487 Score = 28.9 bits (63), Expect = 9.2 Identities = 15/33 (45%), Positives = 17/33 (51%) Frame = +1 Query: 259 CSILVGKLVNTLPLGYPSRRIDAFLERHSTTRP 357 C+ L L N LPLG RIDA R +RP Sbjct: 396 CNALFDALFNILPLGTELDRIDATPSRRGDSRP 428
>WNK1_RAT (Q9JIH7) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein| kinase with no lysine 1) (Protein kinase, lysine-deficient 1) Length = 2126 Score = 28.9 bits (63), Expect = 9.2 Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 4/79 (5%) Frame = +2 Query: 134 PPSRIPARVTAQRNSPVFPPTXTSPLGDHSS---GVYIGLYPSTFAPYLSANW*TPFPLA 304 PP+ +P PV P S G H+S G P T P S P+ Sbjct: 1454 PPTNLPLGTAGMPVMPVGTPGQVSTPGTHASAPASTATGAKPGTTPPKPSLTKTVVPPVG 1513 Query: 305 TLPDASTPSLNATPP-PGP 358 T A T PP PGP Sbjct: 1514 TELSAGTVPCEQLPPFPGP 1532
>KI13B_HUMAN (Q9NQT8) Kinesin-like protein KIF13B (Kinesin-like protein GAKIN)| Length = 1826 Score = 28.9 bits (63), Expect = 9.2 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 8/97 (8%) Frame = +2 Query: 89 RLQEAKA-----LVL*TRRAPPSRI---PARVTAQRNSPVFPPTXTSPLGDHSSGVYIGL 244 R++EA+ +++ T AP +I PA+V + PV T +P + G Sbjct: 1504 RMEEAQPEMGPDVLVQTMGAPALKICDKPAKVPSP--PPVIAVTAVTPAPEAQDGP---- 1557 Query: 245 YPSTFAPYLSANW*TPFPLATLPDASTPSLNATPPPG 355 PS + S + ATL DA P L+A PPG Sbjct: 1558 -PSPLSEASSGYFSHSVSTATLSDALGPGLDAAAPPG 1593
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 28.9 bits (63), Expect = 9.2 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 1/77 (1%) Frame = +2 Query: 131 APPSRIPARVTAQRNSPVFPPTXTSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPLATL 310 +PP+ P P PT P H+ Y +P T+ P + P P Sbjct: 208 SPPTYTPTPKPPATKPPTSTPTHPKPT-PHTP--YPQAHPPTYKPAPKPSPPAPTPPTYT 264 Query: 311 PDAS-TPSLNATPPPGP 358 P S TPS PPP P Sbjct: 265 PPVSHTPSSPPPPPPPP 281 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,355,711 Number of Sequences: 219361 Number of extensions: 1863629 Number of successful extensions: 6188 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5576 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6146 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
