ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloropla... 194 1e-49
2PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloropla... 116 4e-26
3PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloropla... 116 4e-26
4PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloropla... 115 1e-25
5PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloropla... 110 2e-24
6PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloropla... 108 7e-24
7PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloropla... 104 2e-22
8AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7... 33 0.37
9MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2) 31 1.9
10GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112 31 2.4
11BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein) 31 2.4
12TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box tran... 30 3.2
13IF2_CORGL (Q8NP40) Translation initiation factor IF-2 30 3.2
14NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18) 30 5.4
15METX_RALSO (Q8Y3F3) Homoserine O-acetyltransferase (EC 2.3.1.31)... 30 5.4
16ALB2_PEA (P08688) Albumin-2 (PA2) 30 5.4
17RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun... 30 5.4
18CELR1_MOUSE (O35161) Cadherin EGF LAG seven-pass G-type receptor... 30 5.4
19TF7L1_HUMAN (Q9HCS4) Transcription factor 7-like 1 (HMG box tran... 29 7.1
20BCHZ_RHOGE (Q9JPB9) Chlorophyllide reductase subunit Z (EC 1.18.... 29 9.2
21WNK1_RAT (Q9JIH7) Serine/threonine-protein kinase WNK1 (EC 2.7.1... 29 9.2
22KI13B_HUMAN (Q9NQT8) Kinesin-like protein KIF13B (Kinesin-like p... 29 9.2
23EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein) 29 9.2

>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  194 bits (494), Expect = 1e-49
 Identities = 98/118 (83%), Positives = 98/118 (83%)
 Frame = -2

Query: 510 MSACVMXXXXXXXXXXXXLQRSKLGGVRPSARPSLVIXXXXXXXVQTAQPYGPGGGVAFK 331
           MSACVM            LQRSKLGGVRPSARPSLVI       VQTAQPYGPGGGVAFK
Sbjct: 1   MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFK 60

Query: 330 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVXVGGKTGLFLWAVT 157
           EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDV VGGKTGLFLWAVT
Sbjct: 61  EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 118



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>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score =  116 bits (290), Expect = 4e-26
 Identities = 52/73 (71%), Positives = 60/73 (82%)
 Frame = -2

Query: 375 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVX 196
           +T +PYG  G +A ++GVDASGR  KGKGVYQ+ DKYGANVDGYSPIY  +EWSPSGDV 
Sbjct: 46  KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105

Query: 195 VGGKTGLFLWAVT 157
           VGG TGL +WAVT
Sbjct: 106 VGGTTGLAIWAVT 118



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>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  116 bits (290), Expect = 4e-26
 Identities = 52/73 (71%), Positives = 60/73 (82%)
 Frame = -2

Query: 375 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVX 196
           +T +PYG  G +A ++GVDASGR  KGKGVYQ+ DKYGANVDGYSPIY  +EWSPSGDV 
Sbjct: 46  KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105

Query: 195 VGGKTGLFLWAVT 157
           VGG TGL +WAVT
Sbjct: 106 VGGTTGLAIWAVT 118



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>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score =  115 bits (287), Expect = 1e-25
 Identities = 51/73 (69%), Positives = 60/73 (82%)
 Frame = -2

Query: 375 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVX 196
           +T +PYG  G ++ ++GVDASGR  KGKGVYQF DKYGANVDGYSPIY  ++WSPSGDV 
Sbjct: 44  KTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVY 103

Query: 195 VGGKTGLFLWAVT 157
           VGG TGL +WAVT
Sbjct: 104 VGGTTGLAIWAVT 116



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>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  110 bits (276), Expect = 2e-24
 Identities = 55/120 (45%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
 Frame = -2

Query: 510 MSACVMXXXXXXXXXXXXLQRSKLGGVRPSARPS--LVIXXXXXXXVQTAQPYGPGGGVA 337
           M+  VM              +S + G+   +R S    +       ++  +P G GGG+ 
Sbjct: 1   MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60

Query: 336 FKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVXVGGKTGLFLWAVT 157
            ++GVD+SGR   GKGVYQF DKYGANVDGYSPIY  EEW+P+GDV  GG TGL +WAVT
Sbjct: 61  LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120



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>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  108 bits (271), Expect = 7e-24
 Identities = 58/121 (47%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
 Frame = -2

Query: 510 MSACVMXXXXXXXXXXXXLQRSKLGGVRPS---ARPSLVIXXXXXXXVQTAQPYGPGGGV 340
           M+A VM            ++++   G+ PS   ARPS  I       ++T +P+G  G +
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGL-PSLTRARPSFKIVASGVKKIKTDKPFGINGSM 59

Query: 339 AFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVXVGGKTGLFLWAV 160
             ++GVDASGR  KG GVY++ DKYGANVDGYSPIY   EWS SGDV  GG TGL +WAV
Sbjct: 60  DLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAV 119

Query: 159 T 157
           T
Sbjct: 120 T 120



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>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score =  104 bits (259), Expect = 2e-22
 Identities = 47/73 (64%), Positives = 56/73 (76%)
 Frame = -2

Query: 375 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVX 196
           +T +P+G  G +  ++GVDASGR  KG GVY+F DKYGANVDGYSPIY  +EWS SGDV 
Sbjct: 49  KTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVY 108

Query: 195 VGGKTGLFLWAVT 157
            GG TGL +WAVT
Sbjct: 109 KGGVTGLAIWAVT 121



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>AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7.11.1)|
          Length = 799

 Score = 33.5 bits (75), Expect = 0.37
 Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
 Frame = +2

Query: 131 APPSRIPA---RVTAQRNSPVFPPTXTSPLGD-----HSSGVYIGLYPSTFAPYLSANW* 286
           APP+ +PA    V A    PV  P    P+G            +   P   A  L+A+W 
Sbjct: 341 APPAHVPAVPAPVGAPDGGPVRLPGAAVPIGPGPRVADMRAAAVAAPPPESA--LAASWS 398

Query: 287 TPFPLATLPDASTPSLNATPPPG-P*GWAVWTFFAFLATMTND 412
            P P     D + P+    PP   P GW  W F      M+ND
Sbjct: 399 RPRPGVNGADPAVPAPAPAPPEASPAGWRPWRF-----RMSND 436



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>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
 Frame = +2

Query: 122  TRRAPPSRIPARVTAQRNSPVFPP--TXTSPLGDHSSGVYIGL----YPSTFAPYLSANW 283
            T  APPS   A  T      + PP  T TSP G  + G   G      PST     ++ W
Sbjct: 4248 TSTAPPSTPTAPTTTSGGHTLSPPPSTTTSPPGTPTRGTTTGSSSAPTPSTVQTTTTSAW 4307

Query: 284  -*TPFPLATLPDASTPSLNATP 346
              TP PL+T     T  L   P
Sbjct: 4308 TPTPTPLSTPSIIRTTGLRPYP 4329



 Score = 29.6 bits (65), Expect = 5.4
 Identities = 23/79 (29%), Positives = 30/79 (37%)
 Frame = +2

Query: 122  TRRAPPSRIPARVTAQRNSPVFPPTXTSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPL 301
            T   PP+  P+  T    SP    T T P     S   I   PS     ++    T  P 
Sbjct: 1648 TTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSP-ITTTPSPPTTTMTTPSPTTTPS 1706

Query: 302  ATLPDASTPSLNATPPPGP 358
            + +   +TPS   TP P P
Sbjct: 1707 SPITTTTTPSSTTTPSPPP 1725



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>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112|
          Length = 2799

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 146  IPARVTAQRNSPVFPPTXTSPLGDHSSGVYIGLYPSTFAPYLSA 277
            +P  + A   +P    T  SPL   S+G    +  +TF+P+LSA
Sbjct: 1595 VPTTIMAGIVTPFVGTTAFSPLSSKSTGAISSIPKTTFSPFLSA 1638



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>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)|
          Length = 606

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = +2

Query: 134 PPSRIPARVTAQRNSPV---FPPTXTSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPLA 304
           PP    A  T    SP+     P   SP G        G+ P   +   SA+   P PLA
Sbjct: 519 PPPSSAAAATGGSPSPIGGLIKPLAGSPTG--------GMPPHHPSRPDSASPPLPLPLA 570

Query: 305 TLPDASTPSLNATPPPG 355
             P   +P+LN   PPG
Sbjct: 571 RPPSTPSPTLNPGSPPG 587



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>TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box transcription|
           factor 3) (TCF-3) (mTCF-3)
          Length = 584

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +2

Query: 176 SPVFPPTXTSPLGDHSSGVYIGLYPSTFAPYL----SANW*TPFPLATLPDASTPSLNAT 343
           SP  PPT  SP  D  +G+    +PS  +PY      A    P PL  L       + + 
Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSL 259

Query: 344 PPPG 355
           PP G
Sbjct: 260 PPGG 263



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>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 348 GGVAFKEGVDASGRVAKGKGVYQFADKYGAN 256
           GGV   +G  A+ R+A+G  +  FADK GA+
Sbjct: 400 GGVRLPDGKGATIRLARGASLADFADKIGAD 430



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>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)|
          Length = 312

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -1

Query: 328 RRRCVWKGS---QGEGCLPVCRQVWSKC*WVQPYIHTRRVVSKWRRXCWRKDGAVS-LGS 161
           R R  ++GS   +GEG  P+   VW    W Q  ++ R + +K       KD  V  LG+
Sbjct: 63  RLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNK-------KDAPVDHLGT 115

Query: 160 DSCWNSA 140
           + C++S+
Sbjct: 116 EHCYDSS 122



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>METX_RALSO (Q8Y3F3) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 403

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 375 QTAQPYGPGGGVAFKEG-VDASGRVAKGKGVYQFADKYGANVDG 247
           QT QPYG    V   E  V+A  RVA   G+ QFA   G ++ G
Sbjct: 138 QTGQPYGARFPVVTVEDWVNAQARVADRFGIRQFAAVMGGSLGG 181



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>ALB2_PEA (P08688) Albumin-2 (PA2)|
          Length = 231

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 345 GVAFKEGVDASGRVAKGKGVYQFADKYGANVD 250
           G  F+ G+DA+ R  +GK VY F     A +D
Sbjct: 114 GTVFENGIDAAYRSTRGKEVYLFKGDQYARID 145



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>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 327 GVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPS 208
           G+ A+GR     G   F+    ++  G+SP Y+P  WSP+
Sbjct: 27  GLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSP-AWSPT 65



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>CELR1_MOUSE (O35161) Cadherin EGF LAG seven-pass G-type receptor 1 precursor|
          Length = 3034

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 406  GHSGQEGEEGPDCPTLRAWWWSGVQGRRRCVWKGSQGEGCLPVCRQVWSKC 254
            GH GQ  E   D P  + WW + V G   C    +  +G  P C +   +C
Sbjct: 1954 GHYGQYCENKVDLPCPKGWWGNPVCGPCHC----AVSQGFDPDCNKTNGQC 2000



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>TF7L1_HUMAN (Q9HCS4) Transcription factor 7-like 1 (HMG box transcription|
           factor 3) (TCF-3)
          Length = 588

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +2

Query: 176 SPVFPPTXTSPLGDHSSGVYIGLYPSTFAPYL----SANW*TPFPLATLPDASTPSLNAT 343
           SP  PPT  SP  D  +G+    +PS  +PY      A    P PL  L       + + 
Sbjct: 203 SPGSPPTHLSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSL 262

Query: 344 PPPG 355
           PP G
Sbjct: 263 PPGG 266



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>BCHZ_RHOGE (Q9JPB9) Chlorophyllide reductase subunit Z (EC 1.18.-.-) (Chlorin|
           reductase subunit Z)
          Length = 487

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +1

Query: 259 CSILVGKLVNTLPLGYPSRRIDAFLERHSTTRP 357
           C+ L   L N LPLG    RIDA   R   +RP
Sbjct: 396 CNALFDALFNILPLGTELDRIDATPSRRGDSRP 428



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>WNK1_RAT (Q9JIH7) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein|
            kinase with no lysine 1) (Protein kinase,
            lysine-deficient 1)
          Length = 2126

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
 Frame = +2

Query: 134  PPSRIPARVTAQRNSPVFPPTXTSPLGDHSS---GVYIGLYPSTFAPYLSANW*TPFPLA 304
            PP+ +P         PV  P   S  G H+S       G  P T  P  S       P+ 
Sbjct: 1454 PPTNLPLGTAGMPVMPVGTPGQVSTPGTHASAPASTATGAKPGTTPPKPSLTKTVVPPVG 1513

Query: 305  TLPDASTPSLNATPP-PGP 358
            T   A T      PP PGP
Sbjct: 1514 TELSAGTVPCEQLPPFPGP 1532



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>KI13B_HUMAN (Q9NQT8) Kinesin-like protein KIF13B (Kinesin-like protein GAKIN)|
          Length = 1826

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
 Frame = +2

Query: 89   RLQEAKA-----LVL*TRRAPPSRI---PARVTAQRNSPVFPPTXTSPLGDHSSGVYIGL 244
            R++EA+      +++ T  AP  +I   PA+V +    PV   T  +P  +   G     
Sbjct: 1504 RMEEAQPEMGPDVLVQTMGAPALKICDKPAKVPSP--PPVIAVTAVTPAPEAQDGP---- 1557

Query: 245  YPSTFAPYLSANW*TPFPLATLPDASTPSLNATPPPG 355
             PS  +   S  +      ATL DA  P L+A  PPG
Sbjct: 1558 -PSPLSEASSGYFSHSVSTATLSDALGPGLDAAAPPG 1593



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>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)|
          Length = 283

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
 Frame = +2

Query: 131 APPSRIPARVTAQRNSPVFPPTXTSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPLATL 310
           +PP+  P         P   PT   P   H+   Y   +P T+ P    +   P P    
Sbjct: 208 SPPTYTPTPKPPATKPPTSTPTHPKPT-PHTP--YPQAHPPTYKPAPKPSPPAPTPPTYT 264

Query: 311 PDAS-TPSLNATPPPGP 358
           P  S TPS    PPP P
Sbjct: 265 PPVSHTPSSPPPPPPPP 281


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,355,711
Number of Sequences: 219361
Number of extensions: 1863629
Number of successful extensions: 6188
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6146
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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