ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein 825 0.0
2emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMW... 537 e-149
3emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMW... 337 2e-89
4ref|XM_476619.1| Oryza sativa (japonica cultivar-group), mRNA 234 2e-58
5dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 2e-58
6dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 5e-56
7ref|XM_476620.1| Oryza sativa (japonica cultivar-group), mRNA 180 3e-42
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
9dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
10gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (... 103 5e-19
11dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
12gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA 72 2e-09
13emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10 72 2e-09
14gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA 68 3e-08
15gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypept... 60 7e-06
16emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-speci... 60 7e-06
17gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypep... 56 1e-04
18dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone... 46 0.10
19dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone... 46 0.10
20emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD... 44 0.40
21gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 1.6
22gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.6
23gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 6.2
24gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, com... 40 6.2
25gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, co... 40 6.2
26gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, co... 40 6.2
27gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome... 40 6.2
28gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosom... 40 6.2
29emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section... 40 6.2
30emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N... 40 6.2
31gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, comple... 40 6.2
32dbj|AK083570.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 40 6.2
33gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-relat... 40 6.2
34dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor... 40 6.2
35gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, comple... 40 6.2
36dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full ... 40 6.2 
>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score =  825 bits (416), Expect = 0.0
 Identities = 448/459 (97%), Gaps = 2/459 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatttgtatccattanatatgtgcctgacggttataanaccgcactattatacacatcg 60
           |||||||||||||||| |||||| ||||||||||||||  ||||||||||||||||||||
Sbjct: 535 atatttgtatccattacatatgt-cctgacggttataat-ccgcactattatacacatcg 478

                                                                       
Query: 61  tttggtgcatagcttggtttgctgcacataggcttcaggaagccaaggcgctagtactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tttggtgcatagcttggtttgctgcacataggcttcaggaagccaaggcgctagtactgt 418

                                                                       
Query: 121 agacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaacagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaacagcc 358

                                                                       
Query: 181 ccgtctttcctccaacataaacgtcgccacttgnanaccactcttctggtgtgtatatag 240
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 357 ccgtctttcctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatag 298

                                                                       
Query: 241 ggctgtacccatcaacatttgctccatacttgncggcaaactggtaaacacccttcccct 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 297 ggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 238

                                                                       
Query: 301 tggctacccttccagacgcatcgacgccttncttgaacgccactccaccaccaggcccgt 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 237 tggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcccgt 178

                                                                       
Query: 361 anggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcctcn 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 177 agggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcctcg 118

                                                  
Query: 421 ccgatggtcgcacgcctccaagcttgnatcgttgtaaca 459
           |||||||||||||||||||||||||| ||||||||||||
Sbjct: 117 ccgatggtcgcacgcctccaagcttggatcgttgtaaca 79
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>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658
          Length = 377

 Score =  537 bits (271), Expect = e-149
 Identities = 301/312 (96%), Gaps = 2/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 150 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 318

                                                                       
Query: 210 cttgnanaccactcttctggtgtgtatatagggctgtacccatcaacatttgctccatac 269
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgctccatac 258

                                                                       
Query: 270 ttgncgg-caaactggtaaacacccttccccttggctacccttcca-gacgcatcgacgc 327
           ||| |||   |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 257 ttgtcggnhdaactggtaaacacccttccccttggctacccttccaagacgcatcgacgc 198

                                                                       
Query: 328 cttncttgaacgccactccaccaccaggcccgtanggttgggcagtctggaccttcttcg 387
           ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 197 cttccttgaacgccactccaccaccaggcccgtagggttgggcagtctggaccttcttcg 138

                                                                       
Query: 388 ccttcttggccactatgaccaacgacggcctcnccgatggtcgcacgcctccaagcttgn 447
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 137 ccttcttggccactatgaccaacgacggcctcgccgatggtcgcacgcctccaagcttgg 78

                       
Query: 448 atcgttgtaaca 459
           ||||||||||||
Sbjct: 77  atcgttgtaaca 66
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>emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMWG0681
          Length = 247

 Score =  337 bits (170), Expect = 2e-89
 Identities = 178/182 (97%)
 Strand = Plus / Minus

                                                                       
Query: 278 aaactggtaaacacccttccccttggctacccttccagacgcatcgacgccttncttgaa 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 247 aaactggtaaacacccttccccttggctacccttccagacgcatcgacgccttccttgaa 188

                                                                       
Query: 338 cgccactccaccaccaggcccgtanggttgggcagtctggaccttcttcgccttcttggc 397
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 187 cgccactccaccaccaggcccgtagggttgggcagtctggaccttcttcgccttcttggc 128

                                                                       
Query: 398 cactatgaccaacgacggcctcnccgatggtcgcacgcctccaagcttgnatcgttgtaa 457
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 127 cactatgaccaacgacggcctcgccgatggtcgcacgcctccaagcttggatcgttgtaa 68

             
Query: 458 ca 459
           ||
Sbjct: 67  ca 66
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>ref|XM_476619.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 620

 Score =  234 bits (118), Expect = 2e-58
 Identities = 254/301 (84%)
 Strand = Plus / Minus

                                                                       
Query: 118 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 177
           |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                                                       
Query: 178 gccccgtctttcctccaacataaacgtcgccacttgnanaccactcttctggtgtgtata 237
             || | ||||||||||||||| || || ||| ||| | |||| |||||||| || ||||
Sbjct: 400 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 341

                                                                       
Query: 238 tagggctgtacccatcaacatttgctccatacttgncggcaaactggtaaacacccttcc 297
           | |||||||||||||||||||||||||||||||||  || ||||||||||| |||||| |
Sbjct: 340 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 281

                                                                       
Query: 298 ccttggctacccttccagacgcatcgacgccttncttgaacgccactccaccaccaggcc 357
           ||||||||||||||||||| ||||| || |||| ||||||| ||||||| ||| ||||||
Sbjct: 280 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 221

                                                                       
Query: 358 cgtanggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcc 417
           | || || ||||  ||||| | |||||| || |||||||||||||||| ||| || ||||
Sbjct: 220 catagggctgggatgtctgaatcttctttgctttcttggccactatgatcaaagatggcc 161

            
Query: 418 t 418
           |
Sbjct: 160 t 160
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>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full
           insert sequence
          Length = 620

 Score =  234 bits (118), Expect = 2e-58
 Identities = 254/301 (84%)
 Strand = Plus / Minus

                                                                       
Query: 118 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 177
           |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                                                       
Query: 178 gccccgtctttcctccaacataaacgtcgccacttgnanaccactcttctggtgtgtata 237
             || | ||||||||||||||| || || ||| ||| | |||| |||||||| || ||||
Sbjct: 400 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 341

                                                                       
Query: 238 tagggctgtacccatcaacatttgctccatacttgncggcaaactggtaaacacccttcc 297
           | |||||||||||||||||||||||||||||||||  || ||||||||||| |||||| |
Sbjct: 340 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 281

                                                                       
Query: 298 ccttggctacccttccagacgcatcgacgccttncttgaacgccactccaccaccaggcc 357
           ||||||||||||||||||| ||||| || |||| ||||||| ||||||| ||| ||||||
Sbjct: 280 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 221

                                                                       
Query: 358 cgtanggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcc 417
           | || || ||||  ||||| | |||||| || |||||||||||||||| ||| || ||||
Sbjct: 220 catagggctgggatgtctgaatcttctttgctttcttggccactatgatcaaagatggcc 161

            
Query: 418 t 418
           |
Sbjct: 160 t 160
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>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full
           insert sequence
          Length = 777

 Score =  226 bits (114), Expect = 5e-56
 Identities = 253/301 (84%)
 Strand = Plus / Minus

                                                                       
Query: 118 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 177
           |||||||||||| ||| ||||| |  ||| ||||||||||||| | |||||||||||  |
Sbjct: 461 tgtagacaagaatagcgccgccaactagacttccagcaagagtgattgcccagagaagta 402

                                                                       
Query: 178 gccccgtctttcctccaacataaacgtcgccacttgnanaccactcttctggtgtgtata 237
             || | ||||||||||||||| || || ||| ||| | |||| |||||||| || ||||
Sbjct: 401 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 342

                                                                       
Query: 238 tagggctgtacccatcaacatttgctccatacttgncggcaaactggtaaacacccttcc 297
           | |||||||||||||||||||||||||||||||||  || ||||||||||| |||||| |
Sbjct: 341 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 282

                                                                       
Query: 298 ccttggctacccttccagacgcatcgacgccttncttgaacgccactccaccaccaggcc 357
           ||||||||||||||||||| ||||| || |||| ||||||| ||||||| ||| ||||||
Sbjct: 281 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 222

                                                                       
Query: 358 cgtanggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcc 417
           | || || ||||  ||||| | |||||| || |||||||||||||||| ||| || ||||
Sbjct: 221 catagggctgggatgtctgaatcttctttgctttcttggccactatgatcaaagatggcc 162

            
Query: 418 t 418
           |
Sbjct: 161 t 161
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>ref|XM_476620.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score =  180 bits (91), Expect = 3e-42
 Identities = 175/204 (85%)
 Strand = Plus / Minus

                                                                       
Query: 99  gaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagcaaga 158
           ||||||||||| |||||| |||||||||||||||||||  ||||||||||||||| ||||
Sbjct: 401 gaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattccagaaaga 342

                                                                       
Query: 159 gtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgccacttgnanac 218
           || ||||||||||| |||| ||| ||||||||||||  |||||| || |||||||   ||
Sbjct: 341 gtgactgcccagagcaacaaccctgtctttcctccagtataaacatcaccacttggtgac 282

                                                                       
Query: 219 cactcttctggtgtgtatatagggctgtacccatcaacatttgctccatacttgncggca 278
           || || |||||  | ||||| |||||||| ||||||||||| ||||||||||||  ||||
Sbjct: 281 cattcctctgggttatatattgggctgtatccatcaacattagctccatacttgctggca 222

                                   
Query: 279 aactggtaaacacccttccccttg 302
           |||||||| || || |||||||||
Sbjct: 221 aactggtagacccctttccccttg 198
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  119 bits (60), Expect = 8e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                           
Query: 92      gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 151
               |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 2490122 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 2490063

                                                       
Query: 152     agcaagagtcactgcccagagaaacagccccgtctttcct 191
               || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 2490062 agaaagagtgactgcccagagcaacaaccctgtctttcct 2490023



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                         
Query: 243     ctgtacccatcaacatttgctccatacttgncggcaaactggtaaacacccttcccct 300
               ||||||||||||||||||||||||||||||  || ||||||||||| |||||| ||||
Sbjct: 2487136 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 2487079



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                           
Query: 298     ccttggctacccttccagacgcatcgacgccttncttgaacgccactccaccaccaggcc 357
               ||||||||||||||||||| ||||| || |||| ||||||| ||||||| ||| ||||||
Sbjct: 2486995 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 2486936

                
Query: 358     c 358
               |
Sbjct: 2486935 c 2486935



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                         
Query: 243     ctgtacccatcaacatttgctccatacttgncggcaaactggtaaacacccttcccct 300
               ||||| ||||||||||| ||||||||||||  |||||||||||| || || |||||||
Sbjct: 2489753 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 2489696



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                        
Query: 118     tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 174
               |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 2487628 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 2487572



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 49/59 (83%)
 Strand = Plus / Minus

                                                                          
Query: 189     cctccaacataaacgtcgccacttgnanaccactcttctggtgtgtatatagggctgta 247
               ||||||||||| || || ||| ||| | |||| |||||||| || ||||| ||||||||
Sbjct: 2487433 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 2487375
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score =  119 bits (60), Expect = 8e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                         
Query: 92    gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 151
             |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 55102 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 55043

                                                     
Query: 152   agcaagagtcactgcccagagaaacagccccgtctttcct 191
             || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 55042 agaaagagtgactgcccagagcaacaaccctgtctttcct 55003



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                       
Query: 243   ctgtacccatcaacatttgctccatacttgncggcaaactggtaaacacccttcccct 300
             ||||||||||||||||||||||||||||||  || ||||||||||| |||||| ||||
Sbjct: 52116 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 52059



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 298   ccttggctacccttccagacgcatcgacgccttncttgaacgccactccaccaccaggcc 357
             ||||||||||||||||||| ||||| || |||| ||||||| ||||||| ||| ||||||
Sbjct: 51975 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 51916

              
Query: 358   c 358
             |
Sbjct: 51915 c 51915



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 243   ctgtacccatcaacatttgctccatacttgncggcaaactggtaaacacccttcccct 300
             ||||| ||||||||||| ||||||||||||  |||||||||||| || || |||||||
Sbjct: 54733 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 54676



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 118   tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 174
             |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 52608 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 52552



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 49/59 (83%)
 Strand = Plus / Minus

                                                                        
Query: 189   cctccaacataaacgtcgccacttgnanaccactcttctggtgtgtatatagggctgta 247
             ||||||||||| || || ||| ||| | |||| |||||||| || ||||| ||||||||
Sbjct: 52413 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 52355
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>gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (PsbR) mRNA,
           complete cds
          Length = 698

 Score =  103 bits (52), Expect = 5e-19
 Identities = 151/185 (81%)
 Strand = Plus / Minus

                                                                       
Query: 117 ctgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaac 176
           ||||| |||||||||||||| ||   ||||| |||||||||||| | |||||||| ||  
Sbjct: 474 ctgtacacaagaagagcacctccacccagaagtccagcaagagtgattgcccagacaatg 415

                                                                       
Query: 177 agccccgtctttcctccaacataaacgtcgccacttgnanaccactcttctggtgtgtat 236
           || || ||  |||||||||||||||| || ||||| | | |||| || ||||||| ||| 
Sbjct: 414 agaccagtggttcctccaacataaacatcaccactaggagaccattcgtctggtgagtag 355

                                                                       
Query: 237 atagggctgtacccatcaacatttgctccatacttgncggcaaactggtaaacacccttc 296
           || |||||||| |||||||||||||| ||||| ||| |  |||| ||||| |||||||| 
Sbjct: 354 atcgggctgtagccatcaacatttgcaccatatttgtccacaaattggtagacacccttt 295

                
Query: 297 ccctt 301
           |||||
Sbjct: 294 ccctt 290
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>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                       
Query: 243   ctgtacccatcaacatttgctccatacttgncggcaaactggtaaacacccttcccct 300
             ||||||||||||||||||||||||||||||  || ||||||||||| |||||| ||||
Sbjct: 60883 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 60826



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 298   ccttggctacccttccagacgcatcgacgccttncttgaacgccactccaccaccaggcc 357
             ||||||||||||||||||| ||||| || |||| ||||||| ||||||| ||| ||||||
Sbjct: 60742 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 60683

              
Query: 358   c 358
             |
Sbjct: 60682 c 60682



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 118   tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 174
             |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 61375 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 61319



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 49/59 (83%)
 Strand = Plus / Minus

                                                                        
Query: 189   cctccaacataaacgtcgccacttgnanaccactcttctggtgtgtatatagggctgta 247
             ||||||||||| || || ||| ||| | |||| |||||||| || ||||| ||||||||
Sbjct: 61180 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 61122
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>gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA
          Length = 373

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 189 cctccaacataaacgtcgccacttgnanaccactcttctggtgtgtatatagggctgtac 248
           ||||||||||| || || || |||||| |||| || ||||   |||| || |||||||| 
Sbjct: 133 cctccaacatanacatcaccgcttgnagaccagtcatctgtgttgtagatggggctgtat 74

                                                                  
Query: 249 ccatcaacatttgctccatacttgncggcaaactggtaaacacccttccccttgg 303
           |||||||||||||||||||| ||| |  | || |||||||||||||| |||||||
Sbjct: 73  ccatcaacatttgctccatatttgtcaacnaattggtaaacaccctttcccttgg 19
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>emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10
          Length = 639

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 93/113 (82%)
 Strand = Plus / Minus

                                                                       
Query: 189 cctccaacataaacgtcgccacttgnanaccactcttctggtgtgtatatagggctgtac 248
           ||||||||||| || || ||||||| | |||| || ||||   |||| || |||||||| 
Sbjct: 342 cctccaacatagacatcaccacttggagaccagtcatctgtgttgtagatggggctgtat 283

                                                                
Query: 249 ccatcaacatttgctccatacttgncggcaaactggtaaacacccttcccctt 301
           |||||||||||||||||||| ||| |  | || |||||||||||||| |||||
Sbjct: 282 ccatcaacatttgctccatatttgtcaacgaattggtaaacaccctttccctt 230
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>gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA
          Length = 438

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                       
Query: 189 cctccaacataaacgtcgccacttgnanaccactcttctggtgtgtatatagggctgtac 248
           ||||||||||| || || || |||| | |||| || ||||   |||| || |||||||| 
Sbjct: 197 cctccaacatagacatcaccgcttggagaccagtcatctgtgttgtagatggggctgtat 138

                                                                  
Query: 249 ccatcaacatttgctccatacttgncggcaaactggtaaacacccttccccttgg 303
           |||||||||||||||||||| ||| |  | || |||||||||||||| |||||||
Sbjct: 137 ccatcaacatttgctccatatttgtcaacgaattggtaaacaccctttcccttgg 83
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>gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypeptide mRNA, complete
           cds
          Length = 584

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 237 atagggctgtacccatcaacatttgctccatacttgncggcaaactggtaaacacccttc 296
           ||||| ||||| ||||||||||| || ||||| ||| |  ||||||||||||||||||| 
Sbjct: 276 ataggactgtatccatcaacattagcaccatatttgtccacaaactggtaaacacccttt 217

                
Query: 297 ccctt 301
           |||||
Sbjct: 216 ccctt 212
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>emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-specific ST-LS1 gene
          Length = 560

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 93/115 (80%)
 Strand = Plus / Minus

                                                                       
Query: 189 cctccaacataaacgtcgccacttgnanaccactcttctggtgtgtatatagggctgtac 248
           ||||||||||| || || ||||||| | ||||||| ||||   |||| || || ||||| 
Sbjct: 323 cctccaacatagacatcaccacttggagaccactcatctgtgttgtagatgggactgtat 264

                                                                  
Query: 249 ccatcaacatttgctccatacttgncggcaaactggtaaacacccttccccttgg 303
           ||||||||||| |||||||| ||| |  || | ||||| |||||||| |||||||
Sbjct: 263 ccatcaacattagctccatatttgtcaacatattggtacacaccctttcccttgg 209
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>gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypeptide of photosystem II,
           complete cds
          Length = 590

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 74/87 (85%), Gaps = 2/87 (2%)
 Strand = Plus / Minus

                                                                       
Query: 243 ctgtacccatcaacatttgctccatacttgncggcaaactggtaaacaccctt-cccctt 301
           ||||| ||||||||||| || ||||||||| |  |||| |||||||||||||| ||| ||
Sbjct: 292 ctgtaaccatcaacattggcaccatacttgtcaacaaattggtaaacacccttgcccgtt 233

                                      
Query: 302 ggctacccttccagacgcatcgacgcc 328
           ||||  ||||||||||| ||| |||||
Sbjct: 232 ggct-tccttccagacgaatcaacgcc 207
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>dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT17N21, TM0403,
             complete sequence
          Length = 97807

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                       
Query: 243   ctgtacccatcaacatttgctccatacttgncggcaaactggtaaacacccttcccct 300
             ||||| ||||||||||| || || |||||| |  || |||||||||||||||| ||||
Sbjct: 84239 ctgtatccatcaacattagcaccgtacttgtccacatactggtaaacaccctttccct 84296
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>dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT26P21, TM0279b,
             complete sequence
          Length = 28275

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                       
Query: 243   ctgtacccatcaacatttgctccatacttgncggcaaactggtaaacacccttcccct 300
             ||||| ||||||||||| || || |||||| |  || |||||||||||||||| ||||
Sbjct: 14725 ctgtatccatcaacattagcaccgtacttgtccacatactggtaaacaccctttccct 14668
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>emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD protein
          Length = 540

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 91/115 (79%)
 Strand = Plus / Minus

                                                                       
Query: 189 cctccaacataaacgtcgccacttgnanaccactcttctggtgtgtatatagggctgtac 248
           ||||||||||| || || ||||||| | |||| || || |   |||| || || ||||| 
Sbjct: 300 cctccaacatagacatcaccacttggagaccattcatccgtgttgtagatgggactgtat 241

                                                                  
Query: 249 ccatcaacatttgctccatacttgncggcaaactggtaaacacccttccccttgg 303
           ||||||||||| |||||||| ||| |  || | ||||| |||||||| |||||||
Sbjct: 240 ccatcaacattagctccatatttgtcaacatattggtacacaccctttcccttgg 186
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 379     ccttcttcgccttcttggcca 399
               |||||||||||||||||||||
Sbjct: 2184158 ccttcttcgccttcttggcca 2184178
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 379     ccttcttcgccttcttggcca 399
               |||||||||||||||||||||
Sbjct: 2523514 ccttcttcgccttcttggcca 2523534
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 250     catcaacatttgctccatac 269
               ||||||||||||||||||||
Sbjct: 1176164 catcaacatttgctccatac 1176145
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>gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, complete sequence
          Length = 205300

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    cactcttctggtgtgtatat 238
              ||||||||||||||||||||
Sbjct: 143554 cactcttctggtgtgtatat 143573
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>gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, complete sequence
          Length = 197242

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 113  agtactgtagacaagaagag 132
            ||||||||||||||||||||
Sbjct: 4569 agtactgtagacaagaagag 4550
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>gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, complete sequence
          Length = 153145

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 288   acacccttccccttggctac 307
             ||||||||||||||||||||
Sbjct: 35663 acacccttccccttggctac 35644
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>gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome 18, complete sequence
          Length = 155887

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   ccagcagaattccagcaaga 158
             ||||||||||||||||||||
Sbjct: 25861 ccagcagaattccagcaaga 25880
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>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete
            sequence
          Length = 215137

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 139  ccagcagaattccagcaaga 158
            ||||||||||||||||||||
Sbjct: 7108 ccagcagaattccagcaaga 7089
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>emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section 19 of 21): from 3608981 to
              3809670
          Length = 200690

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     ttggtttgctgcacataggc 93
              ||||||||||||||||||||
Sbjct: 125094 ttggtttgctgcacataggc 125075
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>emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] genes
          Length = 14047

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   ttggtttgctgcacataggc 93
            ||||||||||||||||||||
Sbjct: 1312 ttggtttgctgcacataggc 1331
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>gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, complete sequence
          Length = 187624

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   taaacacccttccccttggc 304
             ||||||||||||||||||||
Sbjct: 65315 taaacacccttccccttggc 65296
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>dbj|AK083570.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:D030046K16
           product:unclassifiable, full insert sequence
          Length = 2480

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 cactcttctggtgtgtatat 238
           ||||||||||||||||||||
Sbjct: 278 cactcttctggtgtgtatat 259
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>gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-related kinase (PRK2) mRNA,
            partial cds
          Length = 2892

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 194  aacataaacgtcgccacttg 213
            ||||||||||||||||||||
Sbjct: 1465 aacataaacgtcgccacttg 1484
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>dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor protein, complete
           cds, clone: citb004m11
          Length = 2001

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  catcgtttggtgcatagctt 75
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442
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>gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, complete sequence
          Length = 187014

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    agtactgtagacaagaagag 132
              ||||||||||||||||||||
Sbjct: 166431 agtactgtagacaagaagag 166412
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>dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full insert sequence
          Length = 2001

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  catcgtttggtgcatagctt 75
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,091,789
Number of Sequences: 3902068
Number of extensions: 3091789
Number of successful extensions: 98774
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98659
Number of HSP's gapped (non-prelim): 107
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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