ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd25o11 |
|---|---|
| Clone Library Name | barley_pub |
>QUA1_ARATH (Q9LSG3) Glycosyltransferase QUASIMODO1 (EC 2.4.1.-)| Length = 559 Score = 131 bits (330), Expect = 9e-31 Identities = 53/88 (60%), Positives = 72/88 (81%) Frame = -1 Query: 495 NEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGYNPHVSSRDLERAAVIHYNGNLKP 316 NE+ LWKLGTLPPGL+TF++ T PLD+SWHVLGLGYNP +S ++ AAV+H+NGN+KP Sbjct: 469 NENRALWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKP 528 Query: 315 WLEIGLPKFRSYWSKYLDYDQPFLRECN 232 WL+I + +FR W+K++DYD F++ CN Sbjct: 529 WLDIAMNQFRPLWTKHVDYDLEFVQACN 556
>GLTR_ARATH (Q9FWA4) Probable glycosyltransferase At3g02350 (EC 2.4.1.-)| Length = 561 Score = 130 bits (326), Expect = 2e-30 Identities = 54/88 (61%), Positives = 71/88 (80%) Frame = -1 Query: 495 NEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGYNPHVSSRDLERAAVIHYNGNLKP 316 NED LWKLGTLPPGL+TF++KT LD+SWHVLGLGYNP VS ++ A VIHYNGN+KP Sbjct: 471 NEDRTLWKLGTLPPGLITFYSKTKSLDKSWHVLGLGYNPGVSMDEIRNAGVIHYNGNMKP 530 Query: 315 WLEIGLPKFRSYWSKYLDYDQPFLRECN 232 WL+I + +++S W+KY+D + F++ CN Sbjct: 531 WLDIAMNQYKSLWTKYVDNEMEFVQMCN 558
>NS1_IADU3 (P08270) Nonstructural protein 1 (NS1) (NS1A) (Fragment)| Length = 227 Score = 30.0 bits (66), Expect = 3.5 Identities = 12/45 (26%), Positives = 24/45 (53%) Frame = -2 Query: 269 TLTMISLFCGNATSIREARPVPPTPSHSDSSLGSSVFDLFVSLDF 135 TL ++ F + + E P+P P H+D + +++ DL L++ Sbjct: 140 TLILLRAFTEDGAIVGEISPLPSLPGHTDEDVKNAIGDLIGGLEW 184
>NS1_IATRS (P08278) Nonstructural protein 1 (NS1) (NS1A) (Fragment)| Length = 227 Score = 29.6 bits (65), Expect = 4.6 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = -2 Query: 269 TLTMISLFCGNATSIREARPVPPTPSHSDSSLGSSVFDLFVSLDF 135 TL ++ F + E P+P P H+D + +++ DL L++ Sbjct: 140 TLILLRAFTEEGAIVGEISPLPSLPGHTDEDVKNAIGDLIGGLEW 184
>METE_BUCAP (Q8KA71) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 757 Score = 29.6 bits (65), Expect = 4.6 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Frame = -1 Query: 456 PGLVTFWN---KTFPLDRSWHVLGLGYNPHVSSRDLERAAVIHYNGNLKPWLEIGLPKFR 286 P + FW+ + L++ +GL V + E+ +I + +P L GLP + Sbjct: 554 PVTILFWSFPREDISLEKIAKQIGLALRDEVLDLEKEKIEIIQID---EPALREGLPLRK 610 Query: 285 SYWSKYLDY 259 S W++YL + Sbjct: 611 SLWNEYLSW 619
>SCNNG_MOUSE (Q9WU39) Amiloride-sensitive sodium channel gamma-subunit| (Epithelial Na+ channel gamma subunit) (Gamma ENaC) (Nonvoltage-gated sodium channel 1 gamma subunit) (SCNEG) (Gamma NaCH) Length = 655 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +3 Query: 15 LTFSYTTMACQKAFGVQNYYFPLLA-CNLNPYKY 113 L FS+ T++ Q FP + CN+NPYKY Sbjct: 74 LVFSFYTVSVSIKVHFQKLDFPAVTICNINPYKY 107
>SCNNG_HUMAN (P51170) Amiloride-sensitive sodium channel gamma-subunit| (Epithelial Na+ channel gamma subunit) (Gamma ENaC) (Nonvoltage-gated sodium channel 1 gamma subunit) (SCNEG) (Gamma NaCH) Length = 649 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = +3 Query: 15 LTFSYTTMACQKAFGVQNYYFPLLA-CNLNPYKYPT 119 L FS+ T++ + FP + CN+NPYKY T Sbjct: 74 LVFSFYTVSVSIKVHFRKLDFPAVTICNINPYKYST 109
>SCNNG_RAT (P37091) Amiloride-sensitive sodium channel gamma-subunit| (Epithelial Na+ channel gamma subunit) (Gamma ENaC) (Nonvoltage-gated sodium channel 1 gamma subunit) (SCNEG) (Gamma NaCH) Length = 650 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +3 Query: 15 LTFSYTTMACQKAFGVQNYYFPLLA-CNLNPYKY 113 L FS+ T++ Q FP + CN+NPYKY Sbjct: 74 LVFSFYTVSVSIKVHFQKLDFPAVTICNINPYKY 107
>PDR10_YEAST (P51533) ATP-dependent permease PDR10| Length = 1564 Score = 29.3 bits (64), Expect = 6.0 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 15/61 (24%) Frame = +2 Query: 116 NMGYRHKNQERQIDQTLNYL---------------G*SQNGLESEVLVLLHGLMLHSRRK 250 N GYRHKN+ R + L Y+ G QNG E+LV H ++ ++K Sbjct: 783 NYGYRHKNKWRSVGIGLAYIIFFLFLYLFFCEYNEGAKQNG---EMLVFPHSVVKKMKKK 839 Query: 251 G 253 G Sbjct: 840 G 840
>SCNNG_RABIT (Q28738) Amiloride-sensitive sodium channel gamma-subunit| (Epithelial Na+ channel gamma subunit) (Gamma ENaC) (Nonvoltage-gated sodium channel 1 gamma subunit) (SCNEG) (Gamma NaCH) Length = 653 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +3 Query: 15 LTFSYTTMACQKAFGVQNYYFPLLA-CNLNPYKY 113 L FS+ T++ Q FP + CN+NPYKY Sbjct: 74 LVFSFYTVSVSIKVHFQKLDFPAVTICNINPYKY 107
>ANI2_CAEEL (Q09994) Anillin-like protein 2| Length = 1009 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Frame = -2 Query: 302 ASPSSEATGQSTLTMISLFCGNATSIREARPVPPTPSHSD----SSLGSSVFDLFVSLDF 135 ASP S + T T++ + S+R++ P P P+ +D SSL S+ + F DF Sbjct: 280 ASPMSRRNRRGTQTIVLPSFDSPASVRKSIPSPGLPTKTDIRSPSSLVKSIANDFEKADF 339 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,079,214 Number of Sequences: 219361 Number of extensions: 1623055 Number of successful extensions: 4666 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4564 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4666 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
