ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25o11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016505.1| Zea mays clone Contig338 mRNA sequence Length = 1048 Score = 222 bits (112), Expect = 8e-55 Identities = 223/260 (85%) Strand = Plus / Minus Query: 218 cttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtactttgac 277 ||||| |||||||||||||||||||| || |||| || ||||| || || ||||| ||| Sbjct: 734 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 675 Query: 278 cagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccattgtaa 337 |||||||| || |||||||| || |||||||| | ||||||||||| ||||||||||||| Sbjct: 674 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 615 Query: 338 tgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaacctagaccg 397 ||||||||||| ||| |||| | |||||| ||| | ||||| || |||||||||||||| Sbjct: 614 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 555 Query: 398 agaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagacctgga 457 |||||||||||||| | |||||| |||||||||||||||||||| |||| ||| ||| Sbjct: 554 agaacatgccatgactggctgaggggaaatgtcttgttccagaatgtgaccaaacccgga 495 Query: 458 gggagagtgccaagtttcca 477 |||||||| ||||||||||| Sbjct: 494 gggagagtaccaagtttcca 475
>ref|XM_481635.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2371 Score = 206 bits (104), Expect = 5e-50 Identities = 227/268 (84%) Strand = Plus / Minus Query: 213 tcttgcttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtact 272 |||| ||||| ||||||||||| || |||||||| || ||||| ||||| || ||||| Sbjct: 1995 tctttcttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatg 1936 Query: 273 ttgaccagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccat 332 ||||||||| ||||||| ||||| || |||||||| ||||| ||||||| ||||||| Sbjct: 1935 ccgaccagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccat 1876 Query: 333 tgtaatgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaaccta 392 ||||||||||||| |||||||| || | ||||| ||||| ||||| ||||||||||| | Sbjct: 1875 tgtaatgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaa 1816 Query: 393 gaccgagaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagac 452 |||| || ||||||||||| |||| |||||| | ||||| ||||||||||||| || || Sbjct: 1815 gaccaaggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaac 1756 Query: 453 ctggagggagagtgccaagtttccatag 480 ||||||| |||||||||||||||||||| Sbjct: 1755 ctggaggcagagtgccaagtttccatag 1728
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 206 bits (104), Expect = 5e-50 Identities = 227/268 (84%) Strand = Plus / Minus Query: 213 tcttgcttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtact 272 |||| ||||| ||||||||||| || |||||||| || ||||| ||||| || ||||| Sbjct: 14395454 tctttcttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatg 14395395 Query: 273 ttgaccagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccat 332 ||||||||| ||||||| ||||| || |||||||| ||||| ||||||| ||||||| Sbjct: 14395394 ccgaccagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccat 14395335 Query: 333 tgtaatgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaaccta 392 ||||||||||||| |||||||| || | ||||| ||||| ||||| ||||||||||| | Sbjct: 14395334 tgtaatgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaa 14395275 Query: 393 gaccgagaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagac 452 |||| || ||||||||||| |||| |||||| | ||||| ||||||||||||| || || Sbjct: 14395274 gaccaaggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaac 14395215 Query: 453 ctggagggagagtgccaagtttccatag 480 ||||||| |||||||||||||||||||| Sbjct: 14395214 ctggaggcagagtgccaagtttccatag 14395187
>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0670E08 Length = 133106 Score = 206 bits (104), Expect = 5e-50 Identities = 227/268 (84%) Strand = Plus / Minus Query: 213 tcttgcttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtact 272 |||| ||||| ||||||||||| || |||||||| || ||||| ||||| || ||||| Sbjct: 39737 tctttcttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatg 39678 Query: 273 ttgaccagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccat 332 ||||||||| ||||||| ||||| || |||||||| ||||| ||||||| ||||||| Sbjct: 39677 ccgaccagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccat 39618 Query: 333 tgtaatgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaaccta 392 ||||||||||||| |||||||| || | ||||| ||||| ||||| ||||||||||| | Sbjct: 39617 tgtaatgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaa 39558 Query: 393 gaccgagaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagac 452 |||| || ||||||||||| |||| |||||| | ||||| ||||||||||||| || || Sbjct: 39557 gaccaaggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaac 39498 Query: 453 ctggagggagagtgccaagtttccatag 480 ||||||| |||||||||||||||||||| Sbjct: 39497 ctggaggcagagtgccaagtttccatag 39470
>dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1136_A10 Length = 101249 Score = 206 bits (104), Expect = 5e-50 Identities = 227/268 (84%) Strand = Plus / Minus Query: 213 tcttgcttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtact 272 |||| ||||| ||||||||||| || |||||||| || ||||| ||||| || ||||| Sbjct: 98534 tctttcttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatg 98475 Query: 273 ttgaccagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccat 332 ||||||||| ||||||| ||||| || |||||||| ||||| ||||||| ||||||| Sbjct: 98474 ccgaccagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccat 98415 Query: 333 tgtaatgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaaccta 392 ||||||||||||| |||||||| || | ||||| ||||| ||||| ||||||||||| | Sbjct: 98414 tgtaatgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaa 98355 Query: 393 gaccgagaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagac 452 |||| || ||||||||||| |||| |||||| | ||||| ||||||||||||| || || Sbjct: 98354 gaccaaggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaac 98295 Query: 453 ctggagggagagtgccaagtttccatag 480 ||||||| |||||||||||||||||||| Sbjct: 98294 ctggaggcagagtgccaagtttccatag 98267
>dbj|AK073839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070B13, full insert sequence Length = 2371 Score = 206 bits (104), Expect = 5e-50 Identities = 227/268 (84%) Strand = Plus / Minus Query: 213 tcttgcttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtact 272 |||| ||||| ||||||||||| || |||||||| || ||||| ||||| || ||||| Sbjct: 1995 tctttcttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatg 1936 Query: 273 ttgaccagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccat 332 ||||||||| ||||||| ||||| || |||||||| ||||| ||||||| ||||||| Sbjct: 1935 ccgaccagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccat 1876 Query: 333 tgtaatgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaaccta 392 ||||||||||||| |||||||| || | ||||| ||||| ||||| ||||||||||| | Sbjct: 1875 tgtaatgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaa 1816 Query: 393 gaccgagaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagac 452 |||| || ||||||||||| |||| |||||| | ||||| ||||||||||||| || || Sbjct: 1815 gaccaaggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaac 1756 Query: 453 ctggagggagagtgccaagtttccatag 480 ||||||| |||||||||||||||||||| Sbjct: 1755 ctggaggcagagtgccaagtttccatag 1728
>gb|AY110251.1| Zea mays CL21732_1 mRNA sequence Length = 707 Score = 198 bits (100), Expect = 1e-47 Identities = 220/260 (84%) Strand = Plus / Plus Query: 218 cttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtactttgac 277 ||||| |||||||||||||||||||| || |||| || ||||| || || ||||| ||| Sbjct: 303 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 362 Query: 278 cagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccattgtaa 337 |||||||| || |||||||| || |||||||| | ||||||||||| ||||||||||||| Sbjct: 363 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 422 Query: 338 tgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaacctagaccg 397 ||||||||||| ||| |||| | |||||| ||| | ||||| || |||||||||||||| Sbjct: 423 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 482 Query: 398 agaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagacctgga 457 |||||||||||||| | |||||| |||||||||||||||||||| |||| || | Sbjct: 483 agaacatgccatgactggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 542 Query: 458 gggagagtgccaagtttcca 477 |||||||| ||||||||||| Sbjct: 543 gggagagtaccaagtttcca 562
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 302 ccaatctcaagccagggcttcaggttgccattgtaatgtatgac 345 ||||||||||||||||| ||||| || |||||||| |||||||| Sbjct: 18390149 ccaatctcaagccagggtttcagattaccattgtagtgtatgac 18390106
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 302 ccaatctcaagccagggcttcaggttgccattgtaatgtatgac 345 ||||||||||||||||| ||||| || |||||||| |||||||| Sbjct: 104885 ccaatctcaagccagggtttcagattaccattgtagtgtatgac 104842
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463D04 Length = 145828 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 302 ccaatctcaagccagggcttcaggttgccattgtaatgtatgac 345 ||||||||||||||||| ||||| || |||||||| |||||||| Sbjct: 52023 ccaatctcaagccagggtttcagattaccattgtagtgtatgac 51980
>dbj|AK100641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110G15, full insert sequence Length = 2535 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 302 ccaatctcaagccagggcttcaggttgccattgtaatgtatgac 345 ||||||||||||||||| ||||| || |||||||| |||||||| Sbjct: 2196 ccaatctcaagccagggtttcagattaccattgtagtgtatgac 2153
>gb|BT024133.1| Zea mays clone EL01N0447F06 mRNA sequence Length = 1658 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 302 ccaatctcaagccagggcttcaggttgccattgtaatgtatgac 345 |||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 1367 ccaatctcaagccagggcttcaggtttccgttgtagtggatgac 1324
>gb|AC102197.7| Mus musculus chromosome 1, clone RP24-466J11, complete sequence Length = 150253 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 ttcaggttgccattgtaatgt 340 ||||||||||||||||||||| Sbjct: 105248 ttcaggttgccattgtaatgt 105228
>gb|AC150421.2| Branchiostoma floridae clone CH302-78B15, complete sequence Length = 159541 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 acaatggcatgccaaaaagca 53 ||||||||||||||||||||| Sbjct: 33321 acaatggcatgccaaaaagca 33301
>gb|AC119897.8| Mus musculus chromosome 1, clone RP24-227F14, complete sequence Length = 195375 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 actttttcctacacaacaatg 38 ||||||||||||||||||||| Sbjct: 84282 actttttcctacacaacaatg 84262
>emb|AL442634.13| Human DNA sequence from clone RP11-297L11 on chromosome 9 Contains part of a novel gene (LOC158135), complete sequence Length = 57943 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 aagagagacaaatagatcaaa 161 ||||||||||||||||||||| Sbjct: 3974 aagagagacaaatagatcaaa 3994
>gb|AC021735.8| Homo sapiens chromosome 18, clone RP11-107G7, complete sequence Length = 170510 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 58 gagtgcagaattattattttcccct 82 ||||||||||||||| ||||||||| Sbjct: 80001 gagtgcagaattatttttttcccct 80025
>dbj|AK087054.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030022O08 product:unclassifiable, full insert sequence Length = 1177 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 actttttcctacacaacaatg 38 ||||||||||||||||||||| Sbjct: 783 actttttcctacacaacaatg 803
>emb|AL035402.7|HS88J8 Human DNA sequence from clone RP1-88J8 on chromosome 6p21.31-21.33 Contains the OR2W1 gene for olfactory receptor 2W1, olfactory receptor 2P1 pseudogene OR2P1P and a GTP binding protein pseudogene. Contains ESTs, an STS and GSS, complete sequence Length = 47216 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 132 acaaaaatcaagagagacaaataga 156 |||||||| |||||||||||||||| Sbjct: 26254 acaaaaataaagagagacaaataga 26230
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence Length = 1194300 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 gaatggcttggagtcggagg 206 |||||||||||||||||||| Sbjct: 1072379 gaatggcttggagtcggagg 1072398
>gb|AC147343.2| Pan troglodytes BAC clone CH251-14P15 from Y, complete sequence Length = 277007 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 caaaaagcatttggagtgca 64 |||||||||||||||||||| Sbjct: 168994 caaaaagcatttggagtgca 169013
>gb|AC147117.2| Pan troglodytes BAC clone CH251-532B3 from Y, complete sequence Length = 207020 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 caaaaagcatttggagtgca 64 |||||||||||||||||||| Sbjct: 11745 caaaaagcatttggagtgca 11726
>ref|XM_572234.1| Cryptococcus neoformans var. neoformans JEC21 sister chromatid cohesion-related protein (CNH00420) partial mRNA Length = 2679 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gaatggcttggagtcggagg 206 |||||||||||||||||||| Sbjct: 978 gaatggcttggagtcggagg 959
>gb|AC133210.3| Mus musculus chromosome UNK clone RP23-27L12, complete sequence Length = 210702 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 gagggggaatgtcttgttcc 437 |||||||||||||||||||| Sbjct: 17877 gagggggaatgtcttgttcc 17896
>gb|AC107819.8| Mus musculus chromosome 9, clone RP23-158E1, complete sequence Length = 172309 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 agaatggcttggagtcggag 205 |||||||||||||||||||| Sbjct: 36841 agaatggcttggagtcggag 36860
>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete sequence Length = 172016 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 acggattgatgttgcattcccgca 245 ||||||||||||||||||| |||| Sbjct: 52027 acggattgatgttgcattctcgca 52050
>emb|AL139182.24| Human DNA sequence from clone RP11-278A16 on chromosome 13 Contains a proteasome (prosome, macropain) activator subunit 2 (PA28 beta) (PSME2) pseudogene, complete sequence Length = 133202 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 aagagagacaaatagatcaa 160 |||||||||||||||||||| Sbjct: 70958 aagagagacaaatagatcaa 70939
>emb|AL139113.21| Human DNA sequence from clone RP11-176F3 on chromosome 9 Contains the 3' end of the PRSS3 gene for serine protease 3 (mesotrypsin) (MTG, TRY3, TRY4, PRSS4), the 5' end of a novel gene, two novel pseudogenes, a DC2 protein pseudogene, the UBC3B gene for ubiquitin-conjugating enzyme, two novel genes, the 3' end of a novel gene (KIAA1491, FLJ22435, FLJ21704, FLJ22148, FLJ33002) and a CpG island, complete sequence Length = 193280 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 26 ctacacaacaatggcatgccaaaaagca 53 |||||| |||||||||||| |||||||| Sbjct: 46047 ctacactacaatggcatgctaaaaagca 46020
>dbj|BS000578.1| Pan troglodytes chromosome Y clone:PTB-519P18, complete sequences Length = 175850 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 caaaaagcatttggagtgca 64 |||||||||||||||||||| Sbjct: 42140 caaaaagcatttggagtgca 42159
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 caaaaagcatttggagtgca 64 |||||||||||||||||||| Sbjct: 238013 caaaaagcatttggagtgca 238032
>gb|AC022844.8| Homo sapiens chromosome 8, clone RP11-250P18, complete sequence Length = 171732 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 ttggagtgcagaattattat 74 |||||||||||||||||||| Sbjct: 59046 ttggagtgcagaattattat 59065
>gb|DP000032.1| Felis catus target 116 genomic scaffold Length = 376810 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 gcatgtaatctcaaccccta 106 |||||||||||||||||||| Sbjct: 10047 gcatgtaatctcaaccccta 10028
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ccattgtaatgtatgactgc 348 |||||||||||||||||||| Sbjct: 23970261 ccattgtaatgtatgactgc 23970280
>gb|AC008068.4| Homo sapiens BAC clone RP11-334F17 from 2, complete sequence Length = 154036 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 taaccagacctggagggaga 463 |||||||||||||||||||| Sbjct: 149760 taaccagacctggagggaga 149779
>ref|XM_234281.3| PREDICTED: Rattus norvegicus AT rich interactive domain 4A (Rbp1 like) (predicted) (Arid4a_predicted), mRNA Length = 4822 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 246 gaaaaggctgatcatagtcaaggtactt 273 |||||||||| ||| ||||||||||||| Sbjct: 96 gaaaaggctggtcaaagtcaaggtactt 123
>gb|AC084308.8| Homo sapiens chromosome 8, clone RP1-155O2, complete sequence Length = 121239 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 tgatgttgcattcccgcaga 247 |||||||||||||||||||| Sbjct: 69192 tgatgttgcattcccgcaga 69173
>gb|AC005191.1|AC005191 Homo sapiens PAC clone RP1-269O5 from Xq23, complete sequence Length = 185893 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 atcaagagagacaaatagat 157 |||||||||||||||||||| Sbjct: 143134 atcaagagagacaaatagat 143153
>dbj|AK065485.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003G01, full insert sequence Length = 2519 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 ccattgtaatgtatgactgc 348 |||||||||||||||||||| Sbjct: 2014 ccattgtaatgtatgactgc 1995
>dbj|AP006250.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-632H17, complete sequence Length = 197556 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 tgatgttgcattcccgcaga 247 |||||||||||||||||||| Sbjct: 122489 tgatgttgcattcccgcaga 122470
>dbj|AP006206.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-65L4, complete sequence Length = 156296 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 tgatgttgcattcccgcaga 247 |||||||||||||||||||| Sbjct: 24892 tgatgttgcattcccgcaga 24873
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ccattgtaatgtatgactgc 348 |||||||||||||||||||| Sbjct: 23898467 ccattgtaatgtatgactgc 23898486
>emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa0014A07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144767 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 ccattgtaatgtatgactgc 348 |||||||||||||||||||| Sbjct: 2921 ccattgtaatgtatgactgc 2902
>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 176388 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 ccattgtaatgtatgactgc 348 |||||||||||||||||||| Sbjct: 117135 ccattgtaatgtatgactgc 117116
>dbj|AP000077.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region, section 13/19, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 tgatgttgcattcccgcaga 247 |||||||||||||||||||| Sbjct: 99667 tgatgttgcattcccgcaga 99686 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,460,435 Number of Sequences: 3902068 Number of extensions: 4460435 Number of successful extensions: 78175 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77988 Number of HSP's gapped (non-prelim): 179 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
