ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25o08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IE68_SHV21 (Q01042) Immediate-early protein 28 5.3
2PMYT1_MOUSE (Q9ESG9) Membrane-associated tyrosine- and threonine... 28 7.0

>IE68_SHV21 (Q01042) Immediate-early protein|
          Length = 407

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 301 KVPKMKASSSRYCSSFKVSKLKASQRSXCWVVFSFG 194
           KVPK   + +++ S    S L  S +S CWVV  +G
Sbjct: 289 KVPKKYQARNKFFSQAAPSVLDLSPKSWCWVVDFWG 324



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>PMYT1_MOUSE (Q9ESG9) Membrane-associated tyrosine- and threonine-specific|
           cdc2-inhibitory kinase (EC 2.7.11.1) (Myt1 kinase)
          Length = 490

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -2

Query: 306 VSRSQR*RPPAAGTVPVSRFQS*RLPRDPXAGW 208
           +SRS   RPPA G +PVSR    R P     GW
Sbjct: 38  LSRSLPPRPPAKGCIPVSRLFPPRTP-----GW 65


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,463,074
Number of Sequences: 219361
Number of extensions: 872251
Number of successful extensions: 1645
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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