Clone Name | rbasd25n24 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB182641.1| Zea mays zcyb mRNA for cytochrome b561, complete cds Length = 958 Score = 254 bits (128), Expect = 2e-64 Identities = 287/340 (84%) Strand = Plus / Minus Query: 156 actagttttctgggattggagcgtaaccctgtggttcttcaaggcgagctggggcaacag 215 ||||||||||||| |||||| | |||||||||||||||||||||||| |||| || | || Sbjct: 751 actagttttctggaattggatcataaccctgtggttcttcaaggcgaactggagctatag 692 Query: 216 cagctacaacaactgaggcaccaaatagcacaacaaccaacgccgtgaagttcaccagaa 275 |||| || ||||| ||||||||||||| ||| |||||||| || ||||||||||| | | Sbjct: 691 cagccaccacaacagaggcaccaaataacacgacaaccaatgctgtgaagttcactaaga 632 Query: 276 atgactctggcccatatttgtcgatgcctgagctttggaggaaggtgagcttctccagaa 335 ||| ||||| ||||||||||||| |||||||| | |||||| ||||||||||| |||| Sbjct: 631 atgcctctgtgccatatttgtcgagacctgagctctcgaggaaagtgagcttctcaagaa 572 Query: 336 acccaagttctgccgttgccagggctaaaatgtaaacgaagattccaagaagtacgtgcc 395 | || |||||||| | ||||| ||||| ||||| || |||| |||| |||||||||| Sbjct: 571 agccgagttctgcattagccagtgctaagatgtagacaaagagcccaaagagtacgtgcc 512 Query: 396 aaggaagagcacccttcctcacatttggcgcagccttggggaagaagaaggtcaagaatc 455 |||||||| |||||||| |||| ||||||||||| ||||||||||| || | ||||| Sbjct: 511 aaggaagaacacccttcttcacgtttggcgcagcaccagggaagaagaacgtgacgaatc 452 Query: 456 caaatatccactgaataccatatagagaaattgttcctat 495 ||| |||||||||||||||||| | || |||||||||||| Sbjct: 451 caattatccactgaataccatacaaagtaattgttcctat 412
>gb|AY104321.1| Zea mays PCO083972 mRNA sequence Length = 1138 Score = 252 bits (127), Expect = 9e-64 Identities = 286/339 (84%) Strand = Plus / Minus Query: 157 ctagttttctgggattggagcgtaaccctgtggttcttcaaggcgagctggggcaacagc 216 |||||||||||| |||||| | |||||||||||||||||||||||| |||| || | ||| Sbjct: 926 ctagttttctggaattggatcataaccctgtggttcttcaaggcgaactggagctatagc 867 Query: 217 agctacaacaactgaggcaccaaatagcacaacaaccaacgccgtgaagttcaccagaaa 276 ||| || ||||| ||||||||||||| ||| |||||||| || ||||||||||| | || Sbjct: 866 agccaccacaacagaggcaccaaataacacgacaaccaatgctgtgaagttcactaagaa 807 Query: 277 tgactctggcccatatttgtcgatgcctgagctttggaggaaggtgagcttctccagaaa 336 || ||||| ||||||||||||| |||||||| | |||||| ||||||||||| ||||| Sbjct: 806 tgcctctgtgccatatttgtcgagacctgagctctcgaggaaagtgagcttctcaagaaa 747 Query: 337 cccaagttctgccgttgccagggctaaaatgtaaacgaagattccaagaagtacgtgcca 396 || |||||||| | ||||| ||||| ||||| || |||| |||| ||||||||||| Sbjct: 746 gccgagttctgcattagccagtgctaagatgtagacaaagagcccaaagagtacgtgcca 687 Query: 397 aggaagagcacccttcctcacatttggcgcagccttggggaagaagaaggtcaagaatcc 456 ||||||| |||||||| |||| ||||||||||| ||||||||||| || | |||||| Sbjct: 686 aggaagaacacccttcttcacgtttggcgcagcaccagggaagaagaacgtgacgaatcc 627 Query: 457 aaatatccactgaataccatatagagaaattgttcctat 495 || |||||||||||||||||| | || |||||||||||| Sbjct: 626 aattatccactgaataccatacaaagtaattgttcctat 588
>ref|XM_466997.1| Oryza sativa (japonica cultivar-group), mRNA Length = 750 Score = 228 bits (115), Expect = 1e-56 Identities = 277/331 (83%) Strand = Plus / Minus Query: 162 tttctgggattggagcgtaaccctgtggttcttcaaggcgagctggggcaacagcagcta 221 |||| ||||||||||| || | || |||||||||| |||||| || | ||||||||| | Sbjct: 745 tttcagggattggagcatactcatgcggttcttcaacgcgagcaggagaaacagcagcaa 686 Query: 222 caacaactgaggcaccaaatagcacaacaaccaacgccgtgaagttcaccagaaatgact 281 | || || || ||||| ||||||||||||| ||| |||||||||||||||| ||||| || Sbjct: 685 ccacgacggaagcaccgaatagcacaacaatcaaagccgtgaagttcaccaaaaatgcct 626 Query: 282 ctggcccatatttgtcgatgcctgagctttggaggaaggtgagcttctccagaaacccaa 341 ||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||| || | Sbjct: 625 ctgcgccatatttgtcgagccctgagctttggaggaaagtgagcttctcaagaaatccga 566 Query: 342 gttctgccgttgccagggctaaaatgtaaacgaagattccaagaagtacgtgccaaggaa 401 ||||||| || ||||||||||||||||| ||||||| |||| |||| |||||||||| Sbjct: 565 gttctgcggtggccagggctaaaatgtagacgaagagcccaaacagtatatgccaaggaa 506 Query: 402 gagcacccttcctcacatttggcgcagccttggggaagaagaaggtcaagaatccaaata 461 || ||||||||||||| |||||| ||| |||||||||||| | | || || |||| Sbjct: 505 gaacacccttcctcacgcttggcgaagcacgggggaagaagaaagcaacaaacccgaata 446 Query: 462 tccactgaataccatatagagaaattgttcc 492 |||||||||||||||| | | |||||||||| Sbjct: 445 tccactgaataccatacaaacaaattgttcc 415
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 212 bits (107), Expect = 8e-52 Identities = 239/283 (84%) Strand = Plus / Plus Query: 162 tttctgggattggagcgtaaccctgtggttcttcaaggcgagctggggcaacagcagcta 221 |||| ||||||||||| || | || |||||||||| |||||| || | ||||||||| | Sbjct: 25816034 tttcagggattggagcatactcatgcggttcttcaacgcgagcaggagaaacagcagcaa 25816093 Query: 222 caacaactgaggcaccaaatagcacaacaaccaacgccgtgaagttcaccagaaatgact 281 | || || || ||||| ||||||||||||| ||| |||||||||||||||| ||||| || Sbjct: 25816094 ccacgacggaagcaccgaatagcacaacaatcaaagccgtgaagttcaccaaaaatgcct 25816153 Query: 282 ctggcccatatttgtcgatgcctgagctttggaggaaggtgagcttctccagaaacccaa 341 ||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||| || | Sbjct: 25816154 ctgcgccatatttgtcgagccctgagctttggaggaaagtgagcttctcaagaaatccga 25816213 Query: 342 gttctgccgttgccagggctaaaatgtaaacgaagattccaagaagtacgtgccaaggaa 401 ||||||| || ||||||||||||||||| ||||||| |||| |||| |||||||||| Sbjct: 25816214 gttctgcggtggccagggctaaaatgtagacgaagagcccaaacagtatatgccaaggaa 25816273 Query: 402 gagcacccttcctcacatttggcgcagccttggggaagaagaa 444 || ||||||||||||| |||||| ||| |||||||||||| Sbjct: 25816274 gaacacccttcctcacgcttggcgaagcacgggggaagaagaa 25816316
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G03 Length = 106401 Score = 212 bits (107), Expect = 8e-52 Identities = 239/283 (84%) Strand = Plus / Plus Query: 162 tttctgggattggagcgtaaccctgtggttcttcaaggcgagctggggcaacagcagcta 221 |||| ||||||||||| || | || |||||||||| |||||| || | ||||||||| | Sbjct: 62640 tttcagggattggagcatactcatgcggttcttcaacgcgagcaggagaaacagcagcaa 62699 Query: 222 caacaactgaggcaccaaatagcacaacaaccaacgccgtgaagttcaccagaaatgact 281 | || || || ||||| ||||||||||||| ||| |||||||||||||||| ||||| || Sbjct: 62700 ccacgacggaagcaccgaatagcacaacaatcaaagccgtgaagttcaccaaaaatgcct 62759 Query: 282 ctggcccatatttgtcgatgcctgagctttggaggaaggtgagcttctccagaaacccaa 341 ||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||| || | Sbjct: 62760 ctgcgccatatttgtcgagccctgagctttggaggaaagtgagcttctcaagaaatccga 62819 Query: 342 gttctgccgttgccagggctaaaatgtaaacgaagattccaagaagtacgtgccaaggaa 401 ||||||| || ||||||||||||||||| ||||||| |||| |||| |||||||||| Sbjct: 62820 gttctgcggtggccagggctaaaatgtagacgaagagcccaaacagtatatgccaaggaa 62879 Query: 402 gagcacccttcctcacatttggcgcagccttggggaagaagaa 444 || ||||||||||||| |||||| ||| |||||||||||| Sbjct: 62880 gaacacccttcctcacgcttggcgaagcacgggggaagaagaa 62922
>dbj|AK062638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D05, full insert sequence Length = 553 Score = 212 bits (107), Expect = 8e-52 Identities = 239/283 (84%) Strand = Plus / Minus Query: 162 tttctgggattggagcgtaaccctgtggttcttcaaggcgagctggggcaacagcagcta 221 |||| ||||||||||| || | || |||||||||| |||||| || | ||||||||| | Sbjct: 309 tttcagggattggagcatactcatgcggttcttcaacgcgagcaggagaaacagcagcaa 250 Query: 222 caacaactgaggcaccaaatagcacaacaaccaacgccgtgaagttcaccagaaatgact 281 | || || || ||||| ||||||||||||| ||| |||||||||||||||| ||||| || Sbjct: 249 ccacgacggaagcaccgaatagcacaacaatcaaagccgtgaagttcaccaaaaatgcct 190 Query: 282 ctggcccatatttgtcgatgcctgagctttggaggaaggtgagcttctccagaaacccaa 341 ||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||| || | Sbjct: 189 ctgcgccatatttgtcgagccctgagctttggaggaaagtgagcttctcaagaaatccga 130 Query: 342 gttctgccgttgccagggctaaaatgtaaacgaagattccaagaagtacgtgccaaggaa 401 ||||||| || ||||||||||||||||| ||||||| |||| |||| |||||||||| Sbjct: 129 gttctgcggtggccagggctaaaatgtagacgaagagcccaaacagtatatgccaaggaa 70 Query: 402 gagcacccttcctcacatttggcgcagccttggggaagaagaa 444 || ||||||||||||| |||||| ||| |||||||||||| Sbjct: 69 gaacacccttcctcacgcttggcgaagcacgggggaagaagaa 27
>gb|AY108215.1| Zea mays PCO083971 mRNA sequence Length = 706 Score = 79.8 bits (40), Expect = 8e-12 Identities = 73/84 (86%) Strand = Plus / Minus Query: 394 ccaaggaagagcacccttcctcacatttggcgcagccttggggaagaagaaggtcaagaa 453 |||||||||| |||||||| |||| ||||||||||| ||||||||||| || | ||| Sbjct: 674 ccaaggaagaacacccttcttcacgtttggcgcagcaccagggaagaagaatgtaacgaa 615 Query: 454 tccaaatatccactgaataccata 477 ||||| |||||||||||||||||| Sbjct: 614 tccaactatccactgaataccata 591
>ref|XM_473298.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 711 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 258 ccgtgaagttcaccagaaatgactctggcccatatttgtcgatgcctgagctttggagga 317 |||||||||||||||| || | ||| | || || ||||||| ||| ||||| ||||||| Sbjct: 610 ccgtgaagttcaccaggaacgcctccgcgccgtacttgtcgaggccggagctctggagga 551 Query: 318 aggtgagcttctccag 333 |||| ||||||||||| Sbjct: 550 aggtcagcttctccag 535 Score = 48.1 bits (24), Expect = 0.028 Identities = 51/60 (85%) Strand = Plus / Minus Query: 433 ggggaagaagaaggtcaagaatccaaatatccactgaataccatatagagaaattgttcc 492 |||| ||||||| | || ||||||||||||||||||||| || || || || |||||||| Sbjct: 435 ggggtagaagaacgccacgaatccaaatatccactgaatgccgtacagcgagattgttcc 376
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24, complete sequence Length = 121056 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 258 ccgtgaagttcaccagaaatgactctggcccatatttgtcgatgcctgagctttggagga 317 |||||||||||||||| || | ||| | || || ||||||| ||| ||||| ||||||| Sbjct: 87625 ccgtgaagttcaccaggaacgcctccgcgccgtacttgtcgaggccggagctctggagga 87684 Query: 318 aggtgagcttctccag 333 |||| ||||||||||| Sbjct: 87685 aggtcagcttctccag 87700 Score = 40.1 bits (20), Expect = 6.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 433 ggggaagaagaaggtcaagaatccaaatatccactg 468 |||| ||||||| | || |||||||||||||||||| Sbjct: 87800 ggggtagaagaacgccacgaatccaaatatccactg 87835
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 258 ccgtgaagttcaccagaaatgactctggcccatatttgtcgatgcctgagctttggagga 317 |||||||||||||||| || | ||| | || || ||||||| ||| ||||| ||||||| Sbjct: 26648067 ccgtgaagttcaccaggaacgcctccgcgccgtacttgtcgaggccggagctctggagga 26648126 Query: 318 aggtgagcttctccag 333 |||| ||||||||||| Sbjct: 26648127 aggtcagcttctccag 26648142 Score = 40.1 bits (20), Expect = 6.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 433 ggggaagaagaaggtcaagaatccaaatatccactg 468 |||| ||||||| | || |||||||||||||||||| Sbjct: 26648242 ggggtagaagaacgccacgaatccaaatatccactg 26648277
>dbj|AK069219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012J01, full insert sequence Length = 1046 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 258 ccgtgaagttcaccagaaatgactctggcccatatttgtcgatgcctgagctttggagga 317 |||||||||||||||| || | ||| | || || ||||||| ||| ||||| ||||||| Sbjct: 793 ccgtgaagttcaccaggaacgcctccgcgccgtacttgtcgaggccggagctctggagga 734 Query: 318 aggtgagcttctccag 333 |||| ||||||||||| Sbjct: 733 aggtcagcttctccag 718 Score = 48.1 bits (24), Expect = 0.028 Identities = 51/60 (85%) Strand = Plus / Minus Query: 433 ggggaagaagaaggtcaagaatccaaatatccactgaataccatatagagaaattgttcc 492 |||| ||||||| | || ||||||||||||||||||||| || || || || |||||||| Sbjct: 618 ggggtagaagaacgccacgaatccaaatatccactgaatgccgtacagcgagattgttcc 559
>dbj|AK061426.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G12, full insert sequence Length = 1078 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 258 ccgtgaagttcaccagaaatgactctggcccatatttgtcgatgcctgagctttggagga 317 |||||||||||||||| || | ||| | || || ||||||| ||| ||||| ||||||| Sbjct: 791 ccgtgaagttcaccaggaacgcctccgcgccgtacttgtcgaggccggagctctggagga 732 Query: 318 aggtgagcttctccag 333 |||| ||||||||||| Sbjct: 731 aggtcagcttctccag 716 Score = 48.1 bits (24), Expect = 0.028 Identities = 51/60 (85%) Strand = Plus / Minus Query: 433 ggggaagaagaaggtcaagaatccaaatatccactgaataccatatagagaaattgttcc 492 |||| ||||||| | || ||||||||||||||||||||| || || || || |||||||| Sbjct: 616 ggggtagaagaacgccacgaatccaaatatccactgaatgccgtacagcgagattgttcc 557
>ref|NM_197235.1| Oryza sativa (japonica cultivar-group) putative cytochrome b-561 (OSJNBb0073N24.15), mRNA Length = 693 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 433 ggggaagaagaaggtcaagaatccaaatatccactgaataccatata 479 ||||||||||||||| | ||| |||||||||||||| | |||||||| Sbjct: 417 ggggaagaagaaggtgacgaagccaaatatccactgtacaccatata 371 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 314 aggaaggtgagcttctccagaaaccc 339 |||||||||||||||||||| ||||| Sbjct: 536 aggaaggtgagcttctccaggaaccc 511
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Plus Query: 433 ggggaagaagaaggtcaagaatccaaatatccactg 468 ||||||||||||||| | ||| |||||||||||||| Sbjct: 34787 ggggaagaagaaggtgacgaagccaaatatccactg 34822 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 aggaaggtgagcttctccagaaaccc 339 |||||||||||||||||||| ||||| Sbjct: 34668 aggaaggtgagcttctccaggaaccc 34693
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Plus Query: 433 ggggaagaagaaggtcaagaatccaaatatccactg 468 ||||||||||||||| | ||| |||||||||||||| Sbjct: 100645 ggggaagaagaaggtgacgaagccaaatatccactg 100680 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 aggaaggtgagcttctccagaaaccc 339 |||||||||||||||||||| ||||| Sbjct: 100526 aggaaggtgagcttctccaggaaccc 100551
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Plus Query: 433 ggggaagaagaaggtcaagaatccaaatatccactg 468 ||||||||||||||| | ||| |||||||||||||| Sbjct: 18739367 ggggaagaagaaggtgacgaagccaaatatccactg 18739402 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 aggaaggtgagcttctccagaaaccc 339 |||||||||||||||||||| ||||| Sbjct: 18739248 aggaaggtgagcttctccaggaaccc 18739273 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tatgtatttacatatacaca 32 |||||||||||||||||||| Sbjct: 14177035 tatgtatttacatatacaca 14177054
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Plus Query: 433 ggggaagaagaaggtcaagaatccaaatatccactg 468 ||||||||||||||| | ||| |||||||||||||| Sbjct: 18750220 ggggaagaagaaggtgacgaagccaaatatccactg 18750255 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 aggaaggtgagcttctccagaaaccc 339 |||||||||||||||||||| ||||| Sbjct: 18750101 aggaaggtgagcttctccaggaaccc 18750126 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tatgtatttacatatacaca 32 |||||||||||||||||||| Sbjct: 14185277 tatgtatttacatatacaca 14185296
>gb|AC155947.8| Mus musculus 6 BAC RP24-417N21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 156871 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 2 atatgtgcttgtatgtatttacatatacaca 32 |||||||| ||||||||| |||||||||||| Sbjct: 38830 atatgtgcatgtatgtatatacatatacaca 38800
>gb|AC153374.5| Mus musculus 6 BAC RP23-281H4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 204379 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 2 atatgtgcttgtatgtatttacatatacaca 32 |||||||| ||||||||| |||||||||||| Sbjct: 177021 atatgtgcatgtatgtatatacatatacaca 176991
>dbj|AK111107.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-A03, full insert sequence Length = 946 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 433 ggggaagaagaaggtcaagaatccaaatatccactgaataccatata 479 ||||||||||||||| | ||| |||||||| ||||| | |||||||| Sbjct: 496 ggggaagaagaaggtgacgaagccaaatattcactgtacaccatata 450 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 314 aggaaggtgagcttctccagaaaccc 339 |||||||||||||||||||| ||||| Sbjct: 615 aggaaggtgagcttctccaggaaccc 590
>gb|AC117630.11| Mus musculus chromosome 9, clone RP23-181A16, complete sequence Length = 245165 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 202 agctggggcaacagcagctaca 223 |||||||||||||||||||||| Sbjct: 76645 agctggggcaacagcagctaca 76624
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 252 ccaacgccgtgaagttcaccag 273 |||||||||||||||||||||| Sbjct: 320126 ccaacgccgtgaagttcaccag 320105
>emb|BX511062.12| Zebrafish DNA sequence from clone CH211-266M11 in linkage group 17, complete sequence Length = 131970 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 5 tgtgcttgtatgtatttacata 26 |||||||||||||||||||||| Sbjct: 116780 tgtgcttgtatgtatttacata 116759
>gb|AC068953.9| Homo sapiens chromosome 8, clone CTD1-2019D9, complete sequence Length = 176997 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 11 tgtatgtatttacatatacaca 32 |||||||||||||||||||||| Sbjct: 89379 tgtatgtatttacatatacaca 89400
>gb|AC080166.6| Homo sapiens BAC clone RP11-813C7 from 2, complete sequence Length = 179961 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 11 tgtatgtatttacatatacaca 32 |||||||||||||||||||||| Sbjct: 130488 tgtatgtatttacatatacaca 130509
>dbj|AP003468.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1205B2, complete sequence Length = 177515 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 11 tgtatgtatttacatatacaca 32 |||||||||||||||||||||| Sbjct: 113733 tgtatgtatttacatatacaca 113712
>gb|AC005358.1|AC005358 Homo sapiens chromosome 17, clone hRPK.746_E_8, complete sequence Length = 184886 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 11 tgtatgtatttacatatacaca 32 |||||||||||||||||||||| Sbjct: 61303 tgtatgtatttacatatacaca 61282
>dbj|AP004970.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT30P03, TM0148, complete sequence Length = 106000 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 314 aggaaggtgagcttctccagaaacccaagt 343 ||||| ||||||||||| |||||||||||| Sbjct: 98383 aggaatgtgagcttctctagaaacccaagt 98354
>ref|NM_103970.2| Arabidopsis thaliana unknown protein AT1G50900 mRNA, complete cds Length = 784 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 gcagccttggggaagaagaag 445 ||||||||||||||||||||| Sbjct: 151 gcagccttggggaagaagaag 131
>gb|AC119951.12| Mus musculus chromosome 9, clone RP24-448C4, complete sequence Length = 215131 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 395 caaggaagagcacccttcctc 415 ||||||||||||||||||||| Sbjct: 52464 caaggaagagcacccttcctc 52444
>ref|NM_001014957.1| Bos taurus pyrroline-5-carboxylate reductase family, member 2 (PYCR2), mRNA Length = 1698 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 cctgagctttggaggaaggtg 322 ||||||||||||||||||||| Sbjct: 1345 cctgagctttggaggaaggtg 1325
>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of 11 of the complete sequence Length = 613322 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 100 cactatggtgacagctaactttgtg 124 |||||||||||||| |||||||||| Sbjct: 399182 cactatggtgacagttaactttgtg 399158
>emb|AL354763.17| Human DNA sequence from clone RP11-357L1 on chromosome 13 Contains an ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G variant 1 (ATP6V1G1) pseudogene, complete sequence Length = 192963 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 100 cactatggtgacagctaactttgtg 124 |||||||||||||| |||||||||| Sbjct: 125720 cactatggtgacagttaactttgtg 125696
>gb|AY114573.1| Arabidopsis thaliana unknown protein (At1g50910) mRNA, complete cds Length = 624 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 gcagccttggggaagaagaag 445 ||||||||||||||||||||| Sbjct: 85 gcagccttggggaagaagaag 65
>gb|AY072348.1| Arabidopsis thaliana unknown protein (At1g50910) mRNA, complete cds Length = 681 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 gcagccttggggaagaagaag 445 ||||||||||||||||||||| Sbjct: 110 gcagccttggggaagaagaag 90
>gb|AC084732.1|AC084732 Homo sapiens BAC clone RP11-368G2 from 4, complete sequence Length = 181576 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 118 ctttgtgaatttctgtttatgcagt 142 ||||||||||||||||| ||||||| Sbjct: 64099 ctttgtgaatttctgttgatgcagt 64123
>emb|BX818673.1|CNS0AAWR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL91ZA02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 699 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 gcagccttggggaagaagaag 445 ||||||||||||||||||||| Sbjct: 123 gcagccttggggaagaagaag 103
>gb|AC097484.3| Homo sapiens BAC clone RP11-147K6 from 4, complete sequence Length = 170217 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 118 ctttgtgaatttctgtttatgcagt 142 ||||||||||||||||| ||||||| Sbjct: 21976 ctttgtgaatttctgttgatgcagt 21952
>gb|AC079284.4|AC079284 Arabidopsis thaliana chromosome 1 BAC F8A12 genomic sequence, complete sequence Length = 105445 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 gcagccttggggaagaagaag 445 ||||||||||||||||||||| Sbjct: 55562 gcagccttggggaagaagaag 55542
>gb|AY085852.1| Arabidopsis thaliana clone 19056 mRNA, complete sequence Length = 723 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 gcagccttggggaagaagaag 445 ||||||||||||||||||||| Sbjct: 151 gcagccttggggaagaagaag 131
>gb|AC156160.4| Monodelphis domestica, clone XX-23H4, complete sequence Length = 143400 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 426 cagccttggggaagaagaaggtcaa 450 |||||||||||||| |||||||||| Sbjct: 76678 cagccttggggaaggagaaggtcaa 76702
>gb|BT021513.1| Bos taurus pyrroline-5-carboxylate reductase 1 (PYCR1), mRNA, complete cds Length = 1698 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 cctgagctttggaggaaggtg 322 ||||||||||||||||||||| Sbjct: 1345 cctgagctttggaggaaggtg 1325
>gb|AC163702.3| Gallus gallus BAC clone CH261-124A8 from chromosome ul, complete sequence Length = 179537 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 4 atgtgcttgtatgtatttacatatacaca 32 ||||| |||||||||| |||||||||||| Sbjct: 157732 atgtgattgtatgtatgtacatatacaca 157760
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 aaggcgagctggggcaacagc 216 ||||||||||||||||||||| Sbjct: 889202 aaggcgagctggggcaacagc 889222
>gb|L39071.1|MSGINT Mycobacterium paratuberculosis integrase gene, partial cds Length = 575 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 aaggcgagctggggcaacagc 216 ||||||||||||||||||||| Sbjct: 485 aaggcgagctggggcaacagc 505
>ref|NM_121336.2| Arabidopsis thaliana DNA binding / transcription factor AT5G13330 mRNA, complete cds Length = 927 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gcaacagcagctacaacaac 228 |||||||||||||||||||| Sbjct: 641 gcaacagcagctacaacaac 660
>gb|AC113538.14| Mus musculus chromosome 8, clone RP23-118F24, complete sequence Length = 206380 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 aacagcagctacaacaactg 230 |||||||||||||||||||| Sbjct: 171678 aacagcagctacaacaactg 171697
>ref|XM_636130.1| Dictyostelium discoideum hypothetical protein (DDB0206355), partial mRNA Length = 4209 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gcaacagcagctacaacaac 228 |||||||||||||||||||| Sbjct: 3156 gcaacagcagctacaacaac 3175
>ref|XM_516126.1| PREDICTED: Pan troglodytes dedicator of cytokinesis 10 (LOC459984), mRNA Length = 6467 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tcagatcattcattttcaat 77 |||||||||||||||||||| Sbjct: 825 tcagatcattcattttcaat 806
>gb|AC161505.4| Mus musculus chromosome 8, clone RP24-307K17, complete sequence Length = 215514 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 aacagcagctacaacaactg 230 |||||||||||||||||||| Sbjct: 201072 aacagcagctacaacaactg 201053
>gb|AC150554.1| Drosophila melanogaster clone BACR21O10, complete sequence Length = 193926 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ctttgtgaatttctgtttat 137 |||||||||||||||||||| Sbjct: 36279 ctttgtgaatttctgtttat 36298
>gb|AC124027.2| Mus musculus chromosome X clone RP21-282L18 map qA7.2, complete sequence Length = 147432 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 aagaaggtcaagaatccaaa 459 |||||||||||||||||||| Sbjct: 134663 aagaaggtcaagaatccaaa 134644
>gb|AC124026.2| Mus musculus chromosome X clone RP21-564N13 map qA7.2, complete sequence Length = 178239 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 aagaaggtcaagaatccaaa 459 |||||||||||||||||||| Sbjct: 108035 aagaaggtcaagaatccaaa 108016
>gb|AC124022.2| Mus musculus chromosome X clone RP21-566N22 map qA7.2, complete sequence Length = 163107 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 aagaaggtcaagaatccaaa 459 |||||||||||||||||||| Sbjct: 9856 aagaaggtcaagaatccaaa 9837
>gb|AC124021.2| Mus musculus chromosome X clone RP21-566N22 map qA7.2, complete sequence Length = 152943 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 aagaaggtcaagaatccaaa 459 |||||||||||||||||||| Sbjct: 4015 aagaaggtcaagaatccaaa 3996
>gb|AC124020.2| Mus musculus chromosome X clone RP21-564N13 map qA7.2, complete sequence Length = 155466 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 aagaaggtcaagaatccaaa 459 |||||||||||||||||||| Sbjct: 100091 aagaaggtcaagaatccaaa 100072
>gb|AY514485.1| Avian infectious bronchitis virus strain Cal99, complete genome Length = 27693 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 aagattccaagaagtacgtg 393 |||||||||||||||||||| Sbjct: 12492 aagattccaagaagtacgtg 12511
>gb|AY560861.1| Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g13330) mRNA, complete cds Length = 639 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gcaacagcagctacaacaac 228 |||||||||||||||||||| Sbjct: 552 gcaacagcagctacaacaac 571
>ref|XM_718498.1| Candida albicans SC5314 putative protein kinase (CaO19_4909), mRNA Length = 2199 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gcaacagcagctacaacaac 228 |||||||||||||||||||| Sbjct: 84 gcaacagcagctacaacaac 103
>ref|XM_718310.1| Candida albicans SC5314 putative protein kinase (CaO19_12375), mRNA Length = 2199 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gcaacagcagctacaacaac 228 |||||||||||||||||||| Sbjct: 84 gcaacagcagctacaacaac 103
>gb|AC131669.3| Mus musculus BAC clone RP23-307E9 from chromosome 7, complete sequence Length = 189956 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tatgtatttacatatacaca 32 |||||||||||||||||||| Sbjct: 141835 tatgtatttacatatacaca 141816
>gb|AC137096.10| Mus musculus chromosome 8, clone RP24-473D4, complete sequence Length = 149463 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 aacagcagctacaacaactg 230 |||||||||||||||||||| Sbjct: 76266 aacagcagctacaacaactg 76247
>gb|BT012250.1| Arabidopsis thaliana At5g13330 gene, complete cds Length = 639 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gcaacagcagctacaacaac 228 |||||||||||||||||||| Sbjct: 552 gcaacagcagctacaacaac 571
>gb|AC154644.2| Mus musculus BAC clone RP23-278G20 from chromosome 14, complete sequence Length = 175685 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 aatatgtgcttgtatgtatttacatata 28 ||||||| | |||||||||||||||||| Sbjct: 97946 aatatgtacatgtatgtatttacatata 97973
>gb|BT011609.1| Arabidopsis thaliana At5g13330 mRNA, complete cds Length = 998 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gcaacagcagctacaacaac 228 |||||||||||||||||||| Sbjct: 793 gcaacagcagctacaacaac 812
>gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome 12, complete sequence Length = 183140 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tatgtatttacatatacaca 32 |||||||||||||||||||| Sbjct: 124624 tatgtatttacatatacaca 124605
>gb|AC125179.4| Mus musculus BAC clone RP23-321N8 from chromosome 16, complete sequence Length = 193474 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 tgtgcttgtatgtatttacatata 28 ||||||||||||||| |||||||| Sbjct: 136578 tgtgcttgtatgtatatacatata 136555
>emb|AJ581422.1|HLI581422 Hemerocallis littorea plastid partial matK gene for maturase K, specimen voucher Chase 3833 K Length = 820 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 aaccctgtggttcttcaagg 199 |||||||||||||||||||| Sbjct: 382 aaccctgtggttcttcaagg 401
>gb|AC087428.3| Homo sapiens chromosome 3 clone RP11-18I13 map 3p, complete sequence Length = 149633 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 aatatgtgcttgtatgtatttacatatacaca 32 ||||| ||||||||||||| |||||| ||||| Sbjct: 126035 aatatatgcttgtatgtatgtacatacacaca 126004
>ref|XM_650427.1| Entamoeba histolytica HM-1:IMSS Pten 3-phosphoinositide phosphatase (27.t00028) partial mRNA Length = 1308 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 taaacgaagattccaagaag 387 |||||||||||||||||||| Sbjct: 36 taaacgaagattccaagaag 55
>emb|BX640508.9| Zebrafish DNA sequence from clone RP71-56K2 in linkage group 6, complete sequence Length = 154639 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 tcattcattttcaatcggag 82 |||||||||||||||||||| Sbjct: 127703 tcattcattttcaatcggag 127722
>emb|AL356794.10| Human DNA sequence from clone RP11-551A11 on chromosome 6 Contains a ribosomal protein S3A (40S ribosomal protein S3a, v-fos transformation effector protein 1) (RPS3A)(FTE1) pseudogene, complete sequence Length = 164439 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 cttgtatgtatttacatatacaca 32 ||||||||||| |||||||||||| Sbjct: 101879 cttgtatgtatgtacatatacaca 101902
>emb|AL121586.31|HSDJ477O4 Human DNA sequence from clone RP3-477O4 on chromosome 20 Contains a novel gene, the GDF5 gene for growth differentiation factor 5, the CEP2 gene for centrosomal protein 2, two novel genes, a pseudogene similar to sialyltransferase proteins, the C20orf173 gene for chromosome 20 open reading frame 173, the SDBCAG84 gene for serologically defined breast cancer antigen 84, the RPL36P4 locus for ribosomal protein L36 pseudogene 4, the 3' end of the FER1L4 gene for fer-1-like 4 (C. elegans) and three CpG islands, complete sequence Length = 151903 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 tctgtttatgcagtacactt 148 |||||||||||||||||||| Sbjct: 101040 tctgtttatgcagtacactt 101059
>emb|AL078599.19|HSDJ991C6 Human DNA sequence from clone RP5-991C6 on chromosome 6q14.1-15 Contains the 5' end of a novel gene (FLJ20037, FLJ31495), a ribosomal protein L10 (RPL10) pseudogene, two novel genes and a CpG island, complete sequence Length = 128995 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 tgtatgtatttacatatacacaag 34 |||||||||||||||| ||||||| Sbjct: 27378 tgtatgtatttacatacacacaag 27401
>emb|X76053.1|SCDPB3 S.cerevisiae (s288c) RIF1, DPB3, YmL27 and SNF5 genes Length = 32421 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ggcaacagcagctacaacaa 227 |||||||||||||||||||| Sbjct: 25121 ggcaacagcagctacaacaa 25102
>emb|AL163572.1|ATT22N19 Arabidopsis thaliana DNA chromosome 5, BAC clone T22N19 (ESSA project) Length = 68948 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gcaacagcagctacaacaac 228 |||||||||||||||||||| Sbjct: 17538 gcaacagcagctacaacaac 17557
>emb|AL163491.1|ATT31B5 Arabidopsis thaliana DNA chromosome 5, BAC clone T31B5 (ESSA project) Length = 82612 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gcaacagcagctacaacaac 228 |||||||||||||||||||| Sbjct: 71175 gcaacagcagctacaacaac 71194
>emb|BX544884.8| Zebrafish DNA sequence from clone DKEY-227M3 in linkage group 8, complete sequence Length = 160755 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 tcattcattttcaatcggag 82 |||||||||||||||||||| Sbjct: 5301 tcattcattttcaatcggag 5320
>emb|AL928931.15| Mouse DNA sequence from clone RP23-419H3 on chromosome 2, complete sequence Length = 148740 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tttgttatcagatcattcat 70 |||||||||||||||||||| Sbjct: 62179 tttgttatcagatcattcat 62160
>gb|AC151838.6| Mus musculus BAC clone RP23-226C6 from chromosome 7, complete sequence Length = 222398 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tatgtatttacatatacaca 32 |||||||||||||||||||| Sbjct: 213404 tatgtatttacatatacaca 213423
>emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 in linkage group 16, complete sequence Length = 165294 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tgtatgtatttacatataca 30 |||||||||||||||||||| Sbjct: 34811 tgtatgtatttacatataca 34830
>gb|AE005934.1| Caulobacter crescentus CB15 section 260 of 359 of the complete genome Length = 11398 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ccaacgccgtgaagttcacc 271 |||||||||||||||||||| Sbjct: 7158 ccaacgccgtgaagttcacc 7139
>gb|AE005747.1| Caulobacter crescentus CB15 section 73 of 359 of the complete genome Length = 11070 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ccaacgccgtgaagttcacc 271 |||||||||||||||||||| Sbjct: 7049 ccaacgccgtgaagttcacc 7030
>dbj|AB200246.1| Saccharomyces cerevisiae BIO6 gene for biotin biosynthesis enzyme, partial cds, strain:Sake yeast kyokai No.7, 38 Kb cosmid insert Length = 37737 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ggcaacagcagctacaacaa 227 |||||||||||||||||||| Sbjct: 6864 ggcaacagcagctacaacaa 6845
>gb|AC087620.6| Homo sapiens chromosome 8, clone RP11-35G22, complete sequence Length = 154034 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 agatcattcattttcaatcg 79 |||||||||||||||||||| Sbjct: 119712 agatcattcattttcaatcg 119731
>ref|XM_936892.1| PREDICTED: Homo sapiens similar to CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase (Beta-galactoside alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S) (Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase) (ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (S... (LOC343705), mRNA Length = 870 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 tctgtttatgcagtacactt 148 |||||||||||||||||||| Sbjct: 766 tctgtttatgcagtacactt 747
>ref|XM_293157.3| PREDICTED: Homo sapiens similar to CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase (Beta-galactoside alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S) (Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase) (ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (S... (LOC343705), mRNA Length = 870 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 tctgtttatgcagtacactt 148 |||||||||||||||||||| Sbjct: 766 tctgtttatgcagtacactt 747
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ccaacgccgtgaagttcacc 271 |||||||||||||||||||| Sbjct: 1503268 ccaacgccgtgaagttcacc 1503287
>gb|AC154572.2| Mus musculus BAC clone RP23-392G15 from chromosome 13, complete sequence Length = 185090 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 tgtatttacatatacacaag 34 |||||||||||||||||||| Sbjct: 116622 tgtatttacatatacacaag 116641
>gb|AC154432.2| Mus musculus BAC clone RP24-182L14 from chromosome 13, complete sequence Length = 161618 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 tgtatttacatatacacaag 34 |||||||||||||||||||| Sbjct: 51421 tgtatttacatatacacaag 51440
>gb|AC067871.6|AC067871 Homo sapiens chromosome 8, clone CTD-2026F11, complete sequence Length = 181118 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ttgtatgtatttacatatac 29 |||||||||||||||||||| Sbjct: 31872 ttgtatgtatttacatatac 31891
>gb|AC007984.4|AC007984 Drosophila melanogaster, chromosome 3R, region 97D-97E, BAC clone BACR05C10, complete sequence Length = 174894 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ctttgtgaatttctgtttat 137 |||||||||||||||||||| Sbjct: 145391 ctttgtgaatttctgtttat 145410
>gb|AC008216.3|AC008216 Drosophila melanogaster, chromosome 3R, region 97E-97E, BAC clone BACR27C22, complete sequence Length = 179486 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ctttgtgaatttctgtttat 137 |||||||||||||||||||| Sbjct: 10877 ctttgtgaatttctgtttat 10896
>gb|AC154376.3| Mus musculus BAC clone RP23-71H16 from chromosome 13, complete sequence Length = 169417 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 atatgtgcttgtatgtattt 21 |||||||||||||||||||| Sbjct: 49927 atatgtgcttgtatgtattt 49908
>gb|AC109638.2| Homo sapiens BAC clone RP11-495B16 from 2, complete sequence Length = 104787 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tatgtatttacatatacaca 32 |||||||||||||||||||| Sbjct: 50582 tatgtatttacatatacaca 50601
>gb|AC107070.4| Homo sapiens BAC clone RP11-293H4 from 2, complete sequence Length = 107972 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gcagcactatggtgacagct 115 |||||||||||||||||||| Sbjct: 2802 gcagcactatggtgacagct 2821
>gb|AC011739.7| Homo sapiens BAC clone RP11-68H19 from 2, complete sequence Length = 171811 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 tcagatcattcattttcaat 77 |||||||||||||||||||| Sbjct: 148633 tcagatcattcattttcaat 148652
>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10, complete sequence Length = 142737 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tatgtatttacatatacaca 32 |||||||||||||||||||| Sbjct: 49108 tatgtatttacatatacaca 49127
>emb|BX248502.17| Zebrafish DNA sequence from clone DKEY-284M10 in linkage group 8, complete sequence Length = 215273 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tgtgcttgtatgtatttaca 24 |||||||||||||||||||| Sbjct: 10747 tgtgcttgtatgtatttaca 10728
>dbj|AB017318.1| Hemerocallis fulva chloroplast gene for maturase, partial cds Length = 1124 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 aaccctgtggttcttcaagg 199 |||||||||||||||||||| Sbjct: 677 aaccctgtggttcttcaagg 696
>emb|CT025694.11| Mouse DNA sequence from clone RP24-66N5 on chromosome 14, complete sequence Length = 203022 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 aatatgtgcttgtatgtatttacatata 28 ||||||| | |||||||||||||||||| Sbjct: 113739 aatatgtacatgtatgtatttacatata 113766
>emb|Z36157.1|SCYBR288C S.cerevisiae chromosome II reading frame ORF YBR288c Length = 1815 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ggcaacagcagctacaacaa 227 |||||||||||||||||||| Sbjct: 1086 ggcaacagcagctacaacaa 1067
>gb|AE003759.3| Drosophila melanogaster chromosome 3R, section 97 of 118 of the complete sequence Length = 222554 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ctttgtgaatttctgtttat 137 |||||||||||||||||||| Sbjct: 34944 ctttgtgaatttctgtttat 34963
>gb|AC160565.2| Pan troglodytes BAC clone CH251-539H3 from chromosome unknown, complete sequence Length = 166497 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 tctgtttatgcagtacactt 148 |||||||||||||||||||| Sbjct: 84487 tctgtttatgcagtacactt 84506
>emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in linkage group 16, complete sequence Length = 184760 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tgtatgtatttacatataca 30 |||||||||||||||||||| Sbjct: 131121 tgtatgtatttacatataca 131102
>gb|DQ083171.1| Phrynocephalus przewalskii microsatellite Phr72 sequence Length = 813 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 agaatccaaatatccactga 469 |||||||||||||||||||| Sbjct: 530 agaatccaaatatccactga 511
>gb|AC174458.2| Mus musculus BAC clone RP23-282D14 from chromosome 13, complete sequence Length = 205673 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 atatgtgcttgtatgtattt 21 |||||||||||||||||||| Sbjct: 197498 atatgtgcttgtatgtattt 197517
>gb|AC087431.3| Homo sapiens chromosome 3 clone RP11-775C23 map 3p, complete sequence Length = 196745 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 aatatgtgcttgtatgtatttacatatacaca 32 ||||| ||||||||||||| |||||| ||||| Sbjct: 8227 aatatatgcttgtatgtatgtacatacacaca 8196
>gb|L33781.1|ATHCPBP Arabidopsis thaliana (strain Ecotype RLD) cab3 promoter-binding protein mRNA, complete cds Length = 771 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 caacagcagctacaacaact 229 |||||||||||||||||||| Sbjct: 247 caacagcagctacaacaact 266
>emb|AL808110.7| Mouse DNA sequence from clone RP23-62O13 on chromosome X, complete sequence Length = 175963 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 aagaaggtcaagaatccaaa 459 |||||||||||||||||||| Sbjct: 77978 aagaaggtcaagaatccaaa 77959
>emb|AL591970.10| Mouse DNA sequence from clone RP23-190L21 on chromosome 2, complete sequence Length = 165908 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 attttgttatcagatcattc 68 |||||||||||||||||||| Sbjct: 83096 attttgttatcagatcattc 83115
>gb|M36482.1|YSCSNF5 S.cerevisiae SNF5 protein gene, complete cds Length = 4450 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ggcaacagcagctacaacaa 227 |||||||||||||||||||| Sbjct: 92 ggcaacagcagctacaacaa 73
>dbj|AB014594.2| Homo sapiens mRNA for KIAA0694 protein, partial cds Length = 4008 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tcagatcattcattttcaat 77 |||||||||||||||||||| Sbjct: 1035 tcagatcattcattttcaat 1016 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,365,429 Number of Sequences: 3902068 Number of extensions: 5365429 Number of successful extensions: 119722 Number of sequences better than 10.0: 113 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119296 Number of HSP's gapped (non-prelim): 417 length of query: 499 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 477 effective length of database: 17,147,199,772 effective search space: 8179214291244 effective search space used: 8179214291244 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)