ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25n20 |
|---|---|
| Clone Library Name | barley_pub |
>PPT1_RAT (P45479) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 93.2 bits (230), Expect = 4e-19 Identities = 48/136 (35%), Positives = 76/136 (55%) Frame = -2 Query: 530 YSNYVQAHLAPSGYLKIPTDMTDYLKGCKFLPKLNNEIPSERNITYKERFSSLENLVLIM 351 YS VQ L + Y P Y FL +N E N +YKE +L+ V++ Sbjct: 172 YSKVVQERLVQAQYWHDPIKEEVYRNCSIFLADINQE--RHINESYKENLMALKKFVMVK 229 Query: 350 FEDDAVLIPRETAWFGYYPDGAFNPVLPPQETKLYTEDWIGLRTLDETGRVKFVSVPGGH 171 F +D+++ P ++ WFG+Y G +P QET LYTED +GL+ +D+ G++ F++ G H Sbjct: 230 FFNDSIVDPVDSEWFGFYRSGQAKETIPLQETTLYTEDRLGLKKMDKAGKLVFLAKEGDH 289 Query: 170 LRISRSDMKKYIVPYL 123 L+IS+ +I+P+L Sbjct: 290 LQISKEWFTAHIIPFL 305
>PPT1_MOUSE (O88531) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 89.4 bits (220), Expect = 6e-18 Identities = 46/136 (33%), Positives = 77/136 (56%) Frame = -2 Query: 530 YSNYVQAHLAPSGYLKIPTDMTDYLKGCKFLPKLNNEIPSERNITYKERFSSLENLVLIM 351 YS VQ L + Y P + Y FL +N E N +YK+ +L+ V++ Sbjct: 172 YSKLVQERLVQAQYWHDPIKESVYRNYSIFLADINQERCV--NESYKKNLMALKKFVMVK 229 Query: 350 FEDDAVLIPRETAWFGYYPDGAFNPVLPPQETKLYTEDWIGLRTLDETGRVKFVSVPGGH 171 F +D+++ P ++ WFG+Y G +P QE+ LYTED +GL+ +D+ G++ F++ G H Sbjct: 230 FFNDSIVDPVDSEWFGFYRSGQAKETIPLQESTLYTEDRLGLKKMDKAGKLVFLAKEGDH 289 Query: 170 LRISRSDMKKYIVPYL 123 L+IS+ +I+P+L Sbjct: 290 LQISKEWFTAHIIPFL 305
>PPT1_MACFA (Q8HXW6) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 88.6 bits (218), Expect = 1e-17 Identities = 45/136 (33%), Positives = 74/136 (54%) Frame = -2 Query: 530 YSNYVQAHLAPSGYLKIPTDMTDYLKGCKFLPKLNNEIPSERNITYKERFSSLENLVLIM 351 YS VQ L + Y P Y FL +N E N +YK+ +L+ V++ Sbjct: 172 YSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQE--RGINESYKKNLMALKKFVMVK 229 Query: 350 FEDDAVLIPRETAWFGYYPDGAFNPVLPPQETKLYTEDWIGLRTLDETGRVKFVSVPGGH 171 F +D+++ P ++ WFG+Y G +P QET LYT+D +GL+ +D G++ F++ G H Sbjct: 230 FLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDH 289 Query: 170 LRISRSDMKKYIVPYL 123 L++S +I+P+L Sbjct: 290 LQLSEEWFYAHIIPFL 305
>PPT1_HUMAN (P50897) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 88.6 bits (218), Expect = 1e-17 Identities = 45/136 (33%), Positives = 74/136 (54%) Frame = -2 Query: 530 YSNYVQAHLAPSGYLKIPTDMTDYLKGCKFLPKLNNEIPSERNITYKERFSSLENLVLIM 351 YS VQ L + Y P Y FL +N E N +YK+ +L+ V++ Sbjct: 172 YSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQE--RGINESYKKNLMALKKFVMVK 229 Query: 350 FEDDAVLIPRETAWFGYYPDGAFNPVLPPQETKLYTEDWIGLRTLDETGRVKFVSVPGGH 171 F +D+++ P ++ WFG+Y G +P QET LYT+D +GL+ +D G++ F++ G H Sbjct: 230 FLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDH 289 Query: 170 LRISRSDMKKYIVPYL 123 L++S +I+P+L Sbjct: 290 LQLSEEWFYAHIIPFL 305
>PPT1_BOVIN (P45478) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 85.1 bits (209), Expect = 1e-16 Identities = 42/136 (30%), Positives = 75/136 (55%) Frame = -2 Query: 530 YSNYVQAHLAPSGYLKIPTDMTDYLKGCKFLPKLNNEIPSERNITYKERFSSLENLVLIM 351 Y+ +Q L + Y P Y FL +N E N +YK+ +L+ V++ Sbjct: 172 YNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQE--RGVNESYKKNLMALKKFVMVK 229 Query: 350 FEDDAVLIPRETAWFGYYPDGAFNPVLPPQETKLYTEDWIGLRTLDETGRVKFVSVPGGH 171 F +D ++ P ++ WFG+Y G +P QE+ LYT+D +GL+ +D+ G++ F+++ G H Sbjct: 230 FLNDTIVDPVDSEWFGFYRSGQAKETIPLQESTLYTQDRLGLKAMDKAGQLVFLALEGDH 289 Query: 170 LRISRSDMKKYIVPYL 123 L++S +I+P+L Sbjct: 290 LQLSEEWFYAHIIPFL 305
>PPT2_RAT (O70489) Palmitoyl-protein thioesterase 2 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 2) (PPT-2) Length = 302 Score = 48.5 bits (114), Expect = 1e-05 Identities = 29/88 (32%), Positives = 44/88 (50%) Frame = -2 Query: 461 YLKGCKFLPKLNNEIPSERNITYKERFSSLENLVLIMFEDDAVLIPRETAWFGYYPDGAF 282 YL FL +N E +++ F + LVLI DD V+ P ++++FG+Y A Sbjct: 188 YLNASSFLALINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFY--DAN 245 Query: 281 NPVLPPQETKLYTEDWIGLRTLDETGRV 198 VL +E +Y D GL+TL G + Sbjct: 246 ETVLEMEEQPVYLRDSFGLKTLLARGAI 273
>PPT2_MOUSE (O35448) Palmitoyl-protein thioesterase 2 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 2) (PPT-2) Length = 302 Score = 48.5 bits (114), Expect = 1e-05 Identities = 29/88 (32%), Positives = 44/88 (50%) Frame = -2 Query: 461 YLKGCKFLPKLNNEIPSERNITYKERFSSLENLVLIMFEDDAVLIPRETAWFGYYPDGAF 282 YL FL +N E +++ F + LVLI DD V+ P ++++FG+Y A Sbjct: 188 YLNASSFLALINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFY--DAN 245 Query: 281 NPVLPPQETKLYTEDWIGLRTLDETGRV 198 VL +E +Y D GL+TL G + Sbjct: 246 ETVLEMEEQPVYLRDSFGLKTLLARGAI 273
>PPT2_HUMAN (Q9UMR5) Palmitoyl-protein thioesterase 2 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 2) (PPT-2) (G14) Length = 302 Score = 48.5 bits (114), Expect = 1e-05 Identities = 29/88 (32%), Positives = 45/88 (51%) Frame = -2 Query: 461 YLKGCKFLPKLNNEIPSERNITYKERFSSLENLVLIMFEDDAVLIPRETAWFGYYPDGAF 282 YL FL +N E +++ F + +LVLI DD V+ P ++++FG+Y A Sbjct: 188 YLNASSFLALINGERDHPNATVWRKNFLRVGHLVLIGGPDDGVITPWQSSFFGFY--DAN 245 Query: 281 NPVLPPQETKLYTEDWIGLRTLDETGRV 198 VL +E +Y D GL+TL G + Sbjct: 246 ETVLEMEEQLVYLRDSFGLKTLLARGAI 273
>GLHR_ANTEL (P35409) Probable glycoprotein hormone G-protein coupled receptor| precursor Length = 925 Score = 33.9 bits (76), Expect = 0.32 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = -2 Query: 524 NYVQAHLAPSGYLKIPTDMTDYLKGCKFLPKLNNEIPSERNITYKERFSSLENL 363 N H++ SG + IP+D+ +L+ K+L NN+I + K +SSL L Sbjct: 61 NTTTLHVSFSGEISIPSDILQHLEKLKYLTLNNNKIKNIAKFRVKNGYSSLITL 114
>TPBG_RAT (Q5PQV5) Trophoblast glycoprotein precursor (5T4 oncofetal| trophoblast glycoprotein) (5T4 oncotrophoblast glycoprotein) Length = 426 Score = 30.4 bits (67), Expect = 3.6 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = -2 Query: 506 LAPSGYLKIPTDMTDYLKGCKFLPKLNNEIPSERNITYKERFSSLENLVLIMFEDDAVLI 327 LA + +L +P D+ D L K L NN + S +TY F +L +L + ED+A+ + Sbjct: 223 LASNHFLYLPRDLLDQLPSLKHLDLRNNSLVS---LTYAS-FRNLTHLESLHLEDNALKV 278
>NRP1_XENLA (P28824) Neuropilin-1 precursor (A5 protein) (A5 antigen)| Length = 928 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = -2 Query: 272 LPPQETKLYTEDWIGLRTLDETGRVKFVSVPGGHLRISRSDMKKYIVPY 126 LPP T YT++W+ + L E V+ V + GG + ++ M+K+ + Y Sbjct: 473 LPPSNTHPYTKEWLQI-DLAEEKIVRGVIIQGGKHKENKVFMRKFKIGY 520
>VL2_HPV19 (P36752) Minor capsid protein L2| Length = 520 Score = 30.0 bits (66), Expect = 4.6 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 10/111 (9%) Frame = -2 Query: 437 PKLNNEIPSERNITYKERFSSLEN--LVLIMFEDDAVLIPRETAWFGYYPDGAFNPVLPP 264 P + P +R T R L N LV + DD + + + + + D NP Sbjct: 242 PPRQSSTPIQRLRTAFRRRGGLTNRRLVQQVAVDDPIFLTQPSRLVSFQFD---NPAFEE 298 Query: 263 QETKLYTEDWIGLRT--------LDETGRVKFVSVPGGHLRISRSDMKKYI 135 + T+++ +D R + GR ++ P G++R+SR ++ I Sbjct: 299 EVTQIFEQDLDNFREPPNRDFLDVQTLGRPQYSETPSGYIRVSRLGQRRTI 349
>LNT_RHOBA (Q7UGJ8) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP| N-acyltransferase) Length = 571 Score = 29.6 bits (65), Expect = 6.1 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = +2 Query: 35 GNYSCKRGLPILNVTRFDEFSAWMIHMTVSNKALCTSSCRSLICGGDLLAPTQT*HAQS 211 G Y+ + +NV FD + W++ T S + S +SL+ G LL T A S Sbjct: 161 GTYAVSFVIVCVNVAMFDALNRWVVQRTSS---VSDSPMKSLVTAGGLLIATMVYGAMS 216
>HEMA_IABAN (P03441) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain; Hemagglutinin HA2 chain] (Fragment) Length = 550 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 23/66 (34%) Frame = +2 Query: 2 WVGLTKXPXTSGNYSCKRG------------------LPILNVT-----RFDEFSAWMIH 112 W G+T+ + G+Y+CKRG P+LNVT FD+ W +H Sbjct: 127 WTGVTQ---SGGSYACKRGSDNSFFSRLNWLYESESKYPVLNVTMPNNGNFDKLYIWGVH 183 Query: 113 MTVSNK 130 ++K Sbjct: 184 HPSTDK 189
>MAGC2_HUMAN (Q9UBF1) Melanoma-associated antigen C2 (MAGE-C2 antigen) (MAGE-E1| antigen) (Hepatocellular carcinoma-associated antigen 587) (Cancer-testis antigen 10) (CT10) Length = 373 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = -2 Query: 455 KGCKFLPKLNNEIPSERNITYKERFSSLENLVLIMFE--DDAVLIPRET 315 K +FL KLNN +PS YK+ +E V + DDA ++ E+ Sbjct: 313 KVLEFLAKLNNTVPSSFPSWYKDALKDVEERVQATIDTADDATVMASES 361 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,756,731 Number of Sequences: 219361 Number of extensions: 1710558 Number of successful extensions: 3915 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3826 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3915 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
