>CAD13_CHICK (P33150) Cadherin-13 precursor (Truncated-cadherin) (T-cadherin)|
           (T-cad)
          Length = 712

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 51  NSHIQFILLKDSCLRNFHCPACIFSVASPPITSSMRSLKMDLSMSK--TMPCSSPSGL 218
           N+H Q +LL++    N++ P  +     PP+T++   LK+ +   K   M CS+   L
Sbjct: 639 NTHAQVVLLQNLKKANYNIPISVTDSGKPPLTNN-TELKLQVCSCKKSRMDCSASDAL 695

>SMC1_SCHPO (O94383) Structural maintenance of chromosome 1 (Cohesin complex|
            subunit psm1) (Chromosome segregation protein smc1)
          Length = 1233

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 26/141 (18%)
 Frame = -1

Query: 436  EIIAQKMNIYSSASGTXKLLRS---RKLSGWRLFKELC----------TEVDRLLSE--S 302
            E+   K +  S  S T K+L +   +KL G RL  EL           +E+DR +SE  +
Sbjct: 874  ELELLKEDFASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYVSEWHA 933

Query: 301  LAAKCSEEDEDENIPLSEDALYEMK-DWGSPEGEL------QGMVLDIER---SIFRDLI 152
            +  KC  ED D  +PL E +L  +  D  S  G++         V++ E+    +  D +
Sbjct: 934  ILRKCKLEDID--VPLREGSLTSIPIDDVSNSGDITMGEEPSEPVINFEKFGVEVDYDEL 991

Query: 151  DEVIGGEATEKMQAG-QWKLR 92
            DE +  + +E M +  Q KLR
Sbjct: 992  DEELRNDGSESMASVLQEKLR 1012

>Y1740_ACIAD (Q6FBI2) UPF0343 protein ACIAD1740|
          Length = 294

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
 Frame = +3

Query: 165 KMDLSMSKTMPCSS-------PSGLPQSFISYNASSDNGMFXXXXXXEHFAAKLSDRSRS 323
           K+D+S S T PCS+        +G    F S N      +          A   S RS +
Sbjct: 142 KLDISYSSTCPCSAALSRQIIKNGFKADFSSQNLIPSADIEAWLEQYATLATPHSQRSIA 201

Query: 324 TSVHNSLKRRHPLNFLD 374
           T V       H +NF+D
Sbjct: 202 TVVVQPFDYAHDINFVD 218

>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor|
           (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS
           MICROSPOROCYTES1 protein)
          Length = 1192

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 84  SCLRNFHCPACIFSVASPPITSSMRSL-KMDLSMSKTMPCSSP 209
           S L+NF  P+C F+   P   S ++ L K+DLS +  + CS P
Sbjct: 210 SLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYN-PLKCSIP 251

>ENGA_RHILO (Q986D9) GTP-binding protein engA|
          Length = 479

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = +3

Query: 135 PPITSSMRSLKMDLSMSKTMP------CSSPSGLPQSFISYNASSDNGMFXXXXXXEHFA 296
           PP  +  R     ++ +KT P      CS P  +PQS++ Y ++S    F         A
Sbjct: 404 PPAVAGRRLKVKYVTQAKTRPPGFVVQCSRPDAMPQSYVRYLSNSLREAFDMPGVPIRIA 463

Query: 297 AKLSD 311
            + SD
Sbjct: 464 LRTSD 468

>SPB1_MAGGR (Q52C47) AdoMet-dependent rRNA methyltransferase SPB1 (EC 2.1.1.-)|
           (2'-O-ribose RNA methyltransferase)
           (S-adenosyl-L-methionine-dependent methyltransferase)
          Length = 884

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 406 SSASGTXKLLRSRKLSGWRLFKELCTEVDRLLSESLAAKCSEEDEDENI 260
           S  SG  K  R+R      +FKEL  ++D  + E L A  + EDED ++
Sbjct: 561 SDNSGLSK--RARAFFNQDIFKELDGDMDEPMDEELRAALAGEDEDADM 607

>ERG_CHICK (Q90837) Transcriptional regulator Erg|
          Length = 478

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 21/75 (28%), Positives = 29/75 (38%)
 Frame = +1

Query: 184 PKPCLVAHLQGYPNLSSHTMHPQIMVCFHPHPLRSILLPNSRIGAGQPLCTIP*KDATHL 363
           P+  +  +    P +SS+  HPQ M    PHP    +  +S   A  P    P       
Sbjct: 403 PESSMYKYPSDLPYMSSYHAHPQKMNFVAPHPPALPVTSSSFFAAPNPYWNSPTGGIYPN 462

Query: 364 TSLIEEVSPFHLQSY 408
           T L     P HL +Y
Sbjct: 463 TRLPAAHMPSHLGTY 477

>DDX11_MOUSE (Q6AXC6) Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-)|
           (DEAD/H box protein 11)
          Length = 880

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
 Frame = -1

Query: 469 LHRRIVFDLVNEIIAQKMNIYSSASGTXKLLR--SRKLSGWRLFKELCTEVDRLLSESLA 296
           + +  + +L   +   K+ I+ S +GT K L      LS  R F++   + + LL   LA
Sbjct: 22  IQKDFMAELYKVLEGGKIGIFESPTGTGKSLSLICGALSWLRDFEKKKLQAEALL---LA 78

Query: 295 AKCSEEDEDENIPLSEDALYEMKDWGSPEGELQGMVLDIERSIFRDLIDEV 143
                   ++N  L+  +  E  D   P GE   +   +++   RDL++ +
Sbjct: 79  PGSGPPSSEKNSLLTSSSCQEPTDTPRPAGEPDWVTEFVQKKEERDLVERL 129

>RRMJ3_RAT (Q5RJT2) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 829

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -1

Query: 286 SEEDEDENIPLSEDALYEMKDWGSPEGELQGMVLDIERSIFRDLIDEVIGGEA--TEKMQ 113
           ++ED  E +P+ +   Y + D   PEG   G V+   +   RDLID      A   E+ +
Sbjct: 627 ADEDGFEVVPIEDPVKYRILD---PEGLALGAVIASSKKAKRDLIDNSFNRYAFNEEEEE 683

Query: 112 AGQWKLRRQ 86
             +W ++ +
Sbjct: 684 LPEWFVQEE 692

>RRMJ3_MOUSE (Q9DBE9) Putative rRNA methyltransferase 3 (EC 2.1.1.-) (rRNA|
           (uridine-2'-O-)-methyltransferase 3)
          Length = 838

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 286 SEEDEDENIPLSEDALYEMKDWGSPEGELQGMVLDIERSIFRDLID 149
           ++ED  E +P+ +   Y + D   PEG   G V+   +   RDLID
Sbjct: 635 ADEDGFEVVPIQDPVKYRILD---PEGLALGAVIASSKKAKRDLID 677

>ERG_HUMAN (P11308) Transcriptional regulator ERG (Transforming protein ERG)|
          Length = 462

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 21/75 (28%), Positives = 28/75 (37%)
 Frame = +1

Query: 184 PKPCLVAHLQGYPNLSSHTMHPQIMVCFHPHPLRSILLPNSRIGAGQPLCTIP*KDATHL 363
           P+  L  +    P + S+  HPQ M    PHP    +  +S   A  P    P       
Sbjct: 387 PESSLYKYPSDLPYMGSYHAHPQKMNFVAPHPPALPVTSSSFFAAPNPYWNSPTGGIYPN 446

Query: 364 TSLIEEVSPFHLQSY 408
           T L     P HL +Y
Sbjct: 447 TRLPTSHMPSHLGTY 461

>LAR_CAEEL (Q9BMN8) Tyrosine-protein phosphatase Lar-like precursor (EC|
           3.1.3.48) (Protein-tyrosine phosphate 3)
          Length = 2200

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 129 ASPPITSSMRSLKMDLSMSKTMPCSSPSGLPQSFISY 239
           A+ P++   RSL  D  + K  PC  P+GL   +  Y
Sbjct: 437 ATAPVSPQARSLNRDSILVKWGPCEQPNGLITGYKVY 473


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,245,164
Number of Sequences: 219361
Number of extensions: 1369424
Number of successful extensions: 4179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4178
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)