ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25n18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506947.1| PREDICTED Oryza sativa (japonica cultivar-group... 224 2e-55
2ref|XM_467525.1| Oryza sativa (japonica cultivar-group), mRNA 224 2e-55
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 224 2e-55
4dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic D... 224 2e-55
5dbj|AK104061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
6dbj|AK061514.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
7gb|AY108604.1| Zea mays PCO079730 mRNA sequence 127 4e-26
8gb|AY105962.1| Zea mays PCO079729 mRNA sequence 88 4e-14
9gb|AY112281.1| Zea mays CL4813_1 mRNA sequence 64 5e-07
10dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
11dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
12dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
13dbj|AK064738.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
14ref|NM_127634.3| Arabidopsis thaliana unknown protein AT2G20700 ... 56 1e-04
15gb|BT012380.1| Arabidopsis thaliana At2g20700 mRNA, complete cds 56 1e-04
16gb|BT012124.1| Arabidopsis thaliana At2g20700 gene, complete cds 56 1e-04
17gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H14 map... 56 1e-04
18emb|BX842080.1|CNS09YAP Arabidopsis thaliana Full-length cDNA Co... 56 1e-04
19emb|BX821125.1|CNS0A99B Arabidopsis thaliana Full-length cDNA Co... 48 0.030
20ref|NM_118968.2| Arabidopsis thaliana unknown protein AT4G28280 ... 46 0.12
21gb|BT011635.1| Arabidopsis thaliana At4g28280 mRNA, complete cds 46 0.12
22gb|BT010922.1| Arabidopsis thaliana At4g28280 mRNA, complete cds 46 0.12
23emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, ... 46 0.12
24gb|AC164302.2| Mus musculus BAC clone RP23-286N12 from chromosom... 44 0.48
25ref|NM_187455.1| Oryza sativa (japonica cultivar-group), predic... 44 0.48
26dbj|AK101498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.48
27ref|XM_515541.1| PREDICTED: Pan troglodytes similar to FLJ00175 ... 42 1.9
28ref|NM_003494.2| Homo sapiens dysferlin, limb girdle muscular dy... 42 1.9
29emb|AL645790.8| Zebrafish DNA sequence from clone RP71-6L08 in l... 42 1.9
30emb|AL645750.9| Zebrafish DNA sequence from clone RP71-22E02 in ... 42 1.9
31gb|AC151831.3| Mus musculus BAC clone RP24-81D24 from chromosome... 42 1.9
32gb|AC010147.11| Homo sapiens BAC clone RP11-356H17 from 2, compl... 42 1.9
33gb|AF075575.1|AF075575 Homo sapiens dysferlin mRNA, complete cds 42 1.9
34dbj|AK074104.1| Homo sapiens mRNA for FLJ00175 protein 42 1.9
35ref|NM_190222.1| Oryza sativa (japonica cultivar-group), predic... 40 7.4
36gb|AC005178.1| Homo sapiens chromosome 5, P1 clone 328E3 (LBNL H... 40 7.4
37gb|AC125140.3| Mus musculus chromosome 17 clone RP24-327D1, comp... 40 7.4
38gb|AC107959.8| Homo sapiens chromosome 8, clone RP11-875O11, com... 40 7.4
39gb|AC104139.6| Mus musculus BAC clone RP24-378M10 from chromosom... 40 7.4
40gb|AC122091.6| Rattus norvegicus 9 BAC CH230-375L16 (Children's ... 40 7.4
41emb|CR925699.6| Zebrafish DNA sequence from clone RP71-18J1 in l... 40 7.4
42gb|AC087558.13| Mus musculus strain C57BL/6J chromosome 2 clone ... 40 7.4
43gb|AC092945.6| Homo sapiens 12 BAC RP11-290O5 (Roswell Park Canc... 40 7.4
44dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
45gb|AC013733.10| Homo sapiens BAC clone RP11-553I15 from 2, compl... 40 7.4
46gb|AC008178.3| Homo sapiens BAC clone RP11-551O2 from 2, complet... 40 7.4
47gb|AC154214.1| Mus musculus BAC clone RP24-129M18 from chromosom... 40 7.4
48gb|AC110780.3| Homo sapiens BAC clone RP11-357A22 from 2, comple... 40 7.4
49gb|AC123953.4| Mus musculus chromosome UL clone RP23-234O13, com... 40 7.4
50dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
51emb|AL845427.11| Mouse DNA sequence from clone RP23-436J19 on ch... 40 7.4
52emb|AJ251224.1|BMU251224 Bungarus multicinctus partial b2 gene f... 40 7.4
53gb|AC007868.2|AC007868 Genomic Sequence for Homo sapiens clone 3... 40 7.4
54dbj|AK070632.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
55emb|CR383662.9| Zebrafish DNA sequence from clone DKEY-207J16 in... 40 7.4
56emb|AM050152.1| Bungarus multicinctus b4 chain gene for beta-bun... 40 7.4
57emb|AM050151.1| Bungarus multicinctus b2 chain gene for beta-bun... 40 7.4
58gb|AC132422.3| Mus musculus BAC clone RP23-302G15 from 12, compl... 40 7.4
59gb|AC148005.3| Mus musculus BAC clone RP23-295O6 from 12, comple... 40 7.4
60emb|AL672096.4| Mouse DNA sequence from clone RP23-293N20 on chr... 40 7.4 
>ref|XM_506947.1| PREDICTED Oryza sativa (japonica cultivar-group), P0654B04.18 mRNA
          Length = 1012

 Score =  224 bits (113), Expect = 2e-55
 Identities = 200/229 (87%)
 Strand = Plus / Minus

                                                                       
Query: 320 caagcaagacctagcttgccttctcggcactcatgggcaaacaagcctggtgggtacttg 379
           |||| ||||||||||||||||||||||||||| |  |||||||  || ||||| ||||||
Sbjct: 665 caagaaagacctagcttgccttctcggcactcgtttgcaaacagaccaggtggatacttg 606

                                                                       
Query: 380 ccatagaggttgatgtagctgaacattgtggatgcacagtcattgctttcatcattgatg 439
           ||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||| 
Sbjct: 605 ccatagaggttgatgtagctgaacattgttgatgcacagtcattgctctcgtcgttgata 546

                                                                       
Query: 440 tatgtattaaacgggcatgcaaattccttgaaagaatcacagcagtctttagcaggatat 499
           |||  |||||| |||||||| ||||||||||||| ||| ||||| | |||||||||| | 
Sbjct: 545 tattcattaaatgggcatgcgaattccttgaaagcatcgcagcactgtttagcaggaaac 486

                                                            
Query: 500 tttggccctttgcacctgcttgtgatgacggtgtagttttggaactcaa 548
             ||||||||||||| |||||||||| |  |||||||||||||||||||
Sbjct: 485 cgtggccctttgcacttgcttgtgattattgtgtagttttggaactcaa 437
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>ref|XM_467525.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 952

 Score =  224 bits (113), Expect = 2e-55
 Identities = 200/229 (87%)
 Strand = Plus / Minus

                                                                       
Query: 320 caagcaagacctagcttgccttctcggcactcatgggcaaacaagcctggtgggtacttg 379
           |||| ||||||||||||||||||||||||||| |  |||||||  || ||||| ||||||
Sbjct: 603 caagaaagacctagcttgccttctcggcactcgtttgcaaacagaccaggtggatacttg 544

                                                                       
Query: 380 ccatagaggttgatgtagctgaacattgtggatgcacagtcattgctttcatcattgatg 439
           ||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||| 
Sbjct: 543 ccatagaggttgatgtagctgaacattgttgatgcacagtcattgctctcgtcgttgata 484

                                                                       
Query: 440 tatgtattaaacgggcatgcaaattccttgaaagaatcacagcagtctttagcaggatat 499
           |||  |||||| |||||||| ||||||||||||| ||| ||||| | |||||||||| | 
Sbjct: 483 tattcattaaatgggcatgcgaattccttgaaagcatcgcagcactgtttagcaggaaac 424

                                                            
Query: 500 tttggccctttgcacctgcttgtgatgacggtgtagttttggaactcaa 548
             ||||||||||||| |||||||||| |  |||||||||||||||||||
Sbjct: 423 cgtggccctttgcacttgcttgtgattattgtgtagttttggaactcaa 375
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  224 bits (113), Expect = 2e-55
 Identities = 200/229 (87%)
 Strand = Plus / Plus

                                                                            
Query: 320      caagcaagacctagcttgccttctcggcactcatgggcaaacaagcctggtgggtacttg 379
                |||| ||||||||||||||||||||||||||| |  |||||||  || ||||| ||||||
Sbjct: 29966083 caagaaagacctagcttgccttctcggcactcgtttgcaaacagaccaggtggatacttg 29966142

                                                                            
Query: 380      ccatagaggttgatgtagctgaacattgtggatgcacagtcattgctttcatcattgatg 439
                ||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||| 
Sbjct: 29966143 ccatagaggttgatgtagctgaacattgttgatgcacagtcattgctctcgtcgttgata 29966202

                                                                            
Query: 440      tatgtattaaacgggcatgcaaattccttgaaagaatcacagcagtctttagcaggatat 499
                |||  |||||| |||||||| ||||||||||||| ||| ||||| | |||||||||| | 
Sbjct: 29966203 tattcattaaatgggcatgcgaattccttgaaagcatcgcagcactgtttagcaggaaac 29966262

                                                                 
Query: 500      tttggccctttgcacctgcttgtgatgacggtgtagttttggaactcaa 548
                  ||||||||||||| |||||||||| |  |||||||||||||||||||
Sbjct: 29966263 cgtggccctttgcacttgcttgtgattattgtgtagttttggaactcaa 29966311
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>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0654B04
          Length = 156907

 Score =  224 bits (113), Expect = 2e-55
 Identities = 200/229 (87%)
 Strand = Plus / Plus

                                                                         
Query: 320   caagcaagacctagcttgccttctcggcactcatgggcaaacaagcctggtgggtacttg 379
             |||| ||||||||||||||||||||||||||| |  |||||||  || ||||| ||||||
Sbjct: 66359 caagaaagacctagcttgccttctcggcactcgtttgcaaacagaccaggtggatacttg 66418

                                                                         
Query: 380   ccatagaggttgatgtagctgaacattgtggatgcacagtcattgctttcatcattgatg 439
             ||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||| 
Sbjct: 66419 ccatagaggttgatgtagctgaacattgttgatgcacagtcattgctctcgtcgttgata 66478

                                                                         
Query: 440   tatgtattaaacgggcatgcaaattccttgaaagaatcacagcagtctttagcaggatat 499
             |||  |||||| |||||||| ||||||||||||| ||| ||||| | |||||||||| | 
Sbjct: 66479 tattcattaaatgggcatgcgaattccttgaaagcatcgcagcactgtttagcaggaaac 66538

                                                              
Query: 500   tttggccctttgcacctgcttgtgatgacggtgtagttttggaactcaa 548
               ||||||||||||| |||||||||| |  |||||||||||||||||||
Sbjct: 66539 cgtggccctttgcacttgcttgtgattattgtgtagttttggaactcaa 66587
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>dbj|AK104061.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-A04, full
           insert sequence
          Length = 952

 Score =  224 bits (113), Expect = 2e-55
 Identities = 200/229 (87%)
 Strand = Plus / Minus

                                                                       
Query: 320 caagcaagacctagcttgccttctcggcactcatgggcaaacaagcctggtgggtacttg 379
           |||| ||||||||||||||||||||||||||| |  |||||||  || ||||| ||||||
Sbjct: 603 caagaaagacctagcttgccttctcggcactcgtttgcaaacagaccaggtggatacttg 544

                                                                       
Query: 380 ccatagaggttgatgtagctgaacattgtggatgcacagtcattgctttcatcattgatg 439
           ||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||| 
Sbjct: 543 ccatagaggttgatgtagctgaacattgttgatgcacagtcattgctctcgtcgttgata 484

                                                                       
Query: 440 tatgtattaaacgggcatgcaaattccttgaaagaatcacagcagtctttagcaggatat 499
           |||  |||||| |||||||| ||||||||||||| ||| ||||| | |||||||||| | 
Sbjct: 483 tattcattaaatgggcatgcgaattccttgaaagcatcgcagcactgtttagcaggaaac 424

                                                            
Query: 500 tttggccctttgcacctgcttgtgatgacggtgtagttttggaactcaa 548
             ||||||||||||| |||||||||| |  |||||||||||||||||||
Sbjct: 423 cgtggccctttgcacttgcttgtgattattgtgtagttttggaactcaa 375
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>dbj|AK061514.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H03, full
           insert sequence
          Length = 1012

 Score =  224 bits (113), Expect = 2e-55
 Identities = 200/229 (87%)
 Strand = Plus / Minus

                                                                       
Query: 320 caagcaagacctagcttgccttctcggcactcatgggcaaacaagcctggtgggtacttg 379
           |||| ||||||||||||||||||||||||||| |  |||||||  || ||||| ||||||
Sbjct: 665 caagaaagacctagcttgccttctcggcactcgtttgcaaacagaccaggtggatacttg 606

                                                                       
Query: 380 ccatagaggttgatgtagctgaacattgtggatgcacagtcattgctttcatcattgatg 439
           ||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||| 
Sbjct: 605 ccatagaggttgatgtagctgaacattgttgatgcacagtcattgctctcgtcgttgata 546

                                                                       
Query: 440 tatgtattaaacgggcatgcaaattccttgaaagaatcacagcagtctttagcaggatat 499
           |||  |||||| |||||||| ||||||||||||| ||| ||||| | |||||||||| | 
Sbjct: 545 tattcattaaatgggcatgcgaattccttgaaagcatcgcagcactgtttagcaggaaac 486

                                                            
Query: 500 tttggccctttgcacctgcttgtgatgacggtgtagttttggaactcaa 548
             ||||||||||||| |||||||||| |  |||||||||||||||||||
Sbjct: 485 cgtggccctttgcacttgcttgtgattattgtgtagttttggaactcaa 437
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>gb|AY108604.1| Zea mays PCO079730 mRNA sequence
          Length = 1279

 Score =  127 bits (64), Expect = 4e-26
 Identities = 154/184 (83%)
 Strand = Plus / Minus

                                                                       
Query: 365 cctggtgggtacttgccatagaggttgatgtagctgaacattgtggatgcacagtcattg 424
           |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 714 cctggtggatacttgccatagaggttgatgtagctgaacattgtcgatgcacattcattg 655

                                                                       
Query: 425 ctttcatcattgatgtatgtattaaacgggcatgcaaattccttgaaagaatcacagcag 484
           || || ||||||| |||  | ||||| ||||| || ||||||||||  |   ||||||| 
Sbjct: 654 ctctcgtcattgaggtaattgttaaaagggcacgcgaattccttgagtgcggcacagcat 595

                                                                       
Query: 485 tctttagcaggatattttggccctttgcacctgcttgtgatgacggtgtagttttggaac 544
           |   | || ||| | || || ||||||||| ||||||||||||  |||||||||||||||
Sbjct: 594 tggctggctggaaacttcggtcctttgcacttgcttgtgatgattgtgtagttttggaac 535

               
Query: 545 tcaa 548
           ||||
Sbjct: 534 tcaa 531
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>gb|AY105962.1| Zea mays PCO079729 mRNA sequence
          Length = 883

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                       
Query: 359 aacaagcctggtgggtacttgccatagaggttgatgtagctgaacattgtggatgcacag 418
           |||| ||| ||||| ||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 637 aacaggcccggtggatacttaccatacaggttgatgtagctgaacattgtcgatgcacag 578

                                       
Query: 419 tcattgctttcatcattgatgtatgtat 446
           || ||||| || ||||||| ||| ||||
Sbjct: 577 tcgttgctctcgtcattgaggtacgtat 550



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                            
Query: 500 tttggccctttgcacctgcttgtgatgacggtgtagttttggaactcaa 548
           ||||||||||||||| ||||||||||||  |||||||||||||||||||
Sbjct: 496 tttggccctttgcacttgcttgtgatgattgtgtagttttggaactcaa 448
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>gb|AY112281.1| Zea mays CL4813_1 mRNA sequence
          Length = 818

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 371 gggtacttgccatagaggttgatgtagctgaacattgtgg 410
           ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 397 gggtacttgccgtagaggttgatgtagctgaacatggtgg 358
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                  
Query: 371     gggtacttgccatagaggttgatgtagctgaacat 405
               ||||||||||| |||||||||||||||||||||||
Sbjct: 7177883 gggtacttgccgtagaggttgatgtagctgaacat 7177917
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>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1381_H04
          Length = 130961

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                
Query: 371   gggtacttgccatagaggttgatgtagctgaacat 405
             ||||||||||| |||||||||||||||||||||||
Sbjct: 29988 gggtacttgccgtagaggttgatgtagctgaacat 30022
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>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0592C05
          Length = 150478

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                 
Query: 371    gggtacttgccatagaggttgatgtagctgaacat 405
              ||||||||||| |||||||||||||||||||||||
Sbjct: 129962 gggtacttgccgtagaggttgatgtagctgaacat 129996
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>dbj|AK064738.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C12, full
           insert sequence
          Length = 848

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 371 gggtacttgccatagaggttgatgtagctgaacat 405
           ||||||||||| |||||||||||||||||||||||
Sbjct: 428 gggtacttgccgtagaggttgatgtagctgaacat 394
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>ref|NM_127634.3| Arabidopsis thaliana unknown protein AT2G20700 mRNA, complete cds
          Length = 565

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 386 aggttgatgtagctgaacattgtggatgcaca 417
           |||||||||||||||||||||||||| |||||
Sbjct: 323 aggttgatgtagctgaacattgtggaggcaca 292
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>gb|BT012380.1| Arabidopsis thaliana At2g20700 mRNA, complete cds
          Length = 492

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 386 aggttgatgtagctgaacattgtggatgcaca 417
           |||||||||||||||||||||||||| |||||
Sbjct: 305 aggttgatgtagctgaacattgtggaggcaca 274
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>gb|BT012124.1| Arabidopsis thaliana At2g20700 gene, complete cds
          Length = 631

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 386 aggttgatgtagctgaacattgtggatgcaca 417
           |||||||||||||||||||||||||| |||||
Sbjct: 395 aggttgatgtagctgaacattgtggaggcaca 364
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>gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete
              sequence
          Length = 129667

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                              
Query: 386    aggttgatgtagctgaacattgtggatgcaca 417
              |||||||||||||||||||||||||| |||||
Sbjct: 106508 aggttgatgtagctgaacattgtggaggcaca 106477
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>emb|BX842080.1|CNS09YAP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL50ZE04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 564

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 386 aggttgatgtagctgaacattgtggatgcaca 417
           |||||||||||||||||||||||||| |||||
Sbjct: 323 aggttgatgtagctgaacattgtggaggcaca 292
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>emb|BX821125.1|CNS0A99B Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL17ZH10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 556

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 386 aggttgatgtagctgaacattgtg 409
           ||||||||||||||||||||||||
Sbjct: 314 aggttgatgtagctgaacattgtg 291
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>ref|NM_118968.2| Arabidopsis thaliana unknown protein AT4G28280 mRNA, complete cds
          Length = 874

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 383 tagaggttgatgtagctgaacattgtggatgcaca 417
           ||||| ||||||||||| ||||||||||| |||||
Sbjct: 640 tagagattgatgtagctaaacattgtggaggcaca 606
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>gb|BT011635.1| Arabidopsis thaliana At4g28280 mRNA, complete cds
          Length = 405

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 383 tagaggttgatgtagctgaacattgtggatgcaca 417
           ||||| ||||||||||| ||||||||||| |||||
Sbjct: 242 tagagattgatgtagctaaacattgtggaggcaca 208
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>gb|BT010922.1| Arabidopsis thaliana At4g28280 mRNA, complete cds
          Length = 874

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 383 tagaggttgatgtagctgaacattgtggatgcaca 417
           ||||| ||||||||||| ||||||||||| |||||
Sbjct: 640 tagagattgatgtagctaaacattgtggaggcaca 606
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>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68
          Length = 199749

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 383    tagaggttgatgtagctgaacattgtggatgcaca 417
              ||||| ||||||||||| ||||||||||| |||||
Sbjct: 126807 tagagattgatgtagctaaacattgtggaggcaca 126773
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>gb|AC164302.2| Mus musculus BAC clone RP23-286N12 from chromosome 16, complete sequence
          Length = 192765

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 82     ctgacatagcttcaaattacaa 103
              ||||||||||||||||||||||
Sbjct: 114693 ctgacatagcttcaaattacaa 114672
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>ref|NM_187455.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1035

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 109 caagaaggaaaatttcaagagc 130
           ||||||||||||||||||||||
Sbjct: 721 caagaaggaaaatttcaagagc 700
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>dbj|AK101498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043H11, full
           insert sequence
          Length = 1418

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 109 caagaaggaaaatttcaagagc 130
           ||||||||||||||||||||||
Sbjct: 790 caagaaggaaaatttcaagagc 769
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>ref|XM_515541.1| PREDICTED: Pan troglodytes similar to FLJ00175 protein (LOC459314),
            mRNA
          Length = 1701

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 378  tgccatagaggttgatgtagc 398
            |||||||||||||||||||||
Sbjct: 1138 tgccatagaggttgatgtagc 1118
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>ref|NM_003494.2| Homo sapiens dysferlin, limb girdle muscular dystrophy 2B (autosomal
            recessive) (DYSF), mRNA
          Length = 6907

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 378  tgccatagaggttgatgtagc 398
            |||||||||||||||||||||
Sbjct: 1951 tgccatagaggttgatgtagc 1931
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>emb|AL645790.8| Zebrafish DNA sequence from clone RP71-6L08 in linkage group 23
             Contains the 3' part of a novel gene similar to CELSR
             (cadherin, EGF LAG seven-pass G-type receptor), part of a
             novel gene and a CpG island, complete sequence
          Length = 165257

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    caaattacaagattacaagaa 114
             |||||||||||||||||||||
Sbjct: 89288 caaattacaagattacaagaa 89268
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>emb|AL645750.9| Zebrafish DNA sequence from clone RP71-22E02 in linkage group 4
             Contains part of a novel gene similar to human CELSR1 (EGF
             LAG seven-pass G-type receptor 1 cadherin) and two CpG
             islands, complete sequence
          Length = 151797

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 94    caaattacaagattacaagaa 114
             |||||||||||||||||||||
Sbjct: 88971 caaattacaagattacaagaa 88951
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>gb|AC151831.3| Mus musculus BAC clone RP24-81D24 from chromosome 14, complete sequence
          Length = 212749

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 91     cttcaaattacaagattacaagaag 115
              ||||| |||||||||||||||||||
Sbjct: 109010 cttcacattacaagattacaagaag 109034
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>gb|AC010147.11| Homo sapiens BAC clone RP11-356H17 from 2, complete sequence
          Length = 219086

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 378  tgccatagaggttgatgtagc 398
            |||||||||||||||||||||
Sbjct: 9140 tgccatagaggttgatgtagc 9120
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>gb|AF075575.1|AF075575 Homo sapiens dysferlin mRNA, complete cds
          Length = 6911

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 378  tgccatagaggttgatgtagc 398
            |||||||||||||||||||||
Sbjct: 1955 tgccatagaggttgatgtagc 1935
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>dbj|AK074104.1| Homo sapiens mRNA for FLJ00175 protein
          Length = 4645

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 378 tgccatagaggttgatgtagc 398
           |||||||||||||||||||||
Sbjct: 228 tgccatagaggttgatgtagc 208
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>ref|NM_190222.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1491

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 attgtggatgcacagtcatt 423
           ||||||||||||||||||||
Sbjct: 541 attgtggatgcacagtcatt 560
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>gb|AC005178.1| Homo sapiens chromosome 5, P1 clone 328E3 (LBNL H53), complete sequence
          Length = 84969

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   aagaaggaaaatttcaagag 129
             ||||||||||||||||||||
Sbjct: 14554 aagaaggaaaatttcaagag 14573
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>gb|AC125140.3| Mus musculus chromosome 17 clone RP24-327D1, complete sequence
          Length = 146052

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 501    ttggccctttgcacctgctt 520
              ||||||||||||||||||||
Sbjct: 105923 ttggccctttgcacctgctt 105942
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>gb|AC107959.8| Homo sapiens chromosome 8, clone RP11-875O11, complete sequence
          Length = 211291

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    aaagaatatgtaatctgaca 87
             ||||||||||||||||||||
Sbjct: 43860 aaagaatatgtaatctgaca 43841
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>gb|AC104139.6| Mus musculus BAC clone RP24-378M10 from chromosome 17, complete
             sequence
          Length = 138171

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   aaaggtggagaaataaaggt 193
             ||||||||||||||||||||
Sbjct: 84694 aaaggtggagaaataaaggt 84713
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>gb|AC122091.6| Rattus norvegicus 9 BAC CH230-375L16 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 231967

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   tgccttctcggcactcatgg 355
             ||||||||||||||||||||
Sbjct: 58835 tgccttctcggcactcatgg 58854
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>emb|CR925699.6| Zebrafish DNA sequence from clone RP71-18J1 in linkage group 4,
             complete sequence
          Length = 150030

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    aaattacaagattacaagaa 114
             ||||||||||||||||||||
Sbjct: 85940 aaattacaagattacaagaa 85921
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>gb|AC087558.13| Mus musculus strain C57BL/6J chromosome 2 clone rp23-282p18, complete
              sequence
          Length = 217766

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     caaattacaagattacaaga 113
              ||||||||||||||||||||
Sbjct: 183635 caaattacaagattacaaga 183654
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>gb|AC092945.6| Homo sapiens 12 BAC RP11-290O5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 146969

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 457    tgcaaattccttgaaagaat 476
              ||||||||||||||||||||
Sbjct: 121326 tgcaaattccttgaaagaat 121307
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 404      attgtggatgcacagtcatt 423
                ||||||||||||||||||||
Sbjct: 38736807 attgtggatgcacagtcatt 38736788
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>gb|AC013733.10| Homo sapiens BAC clone RP11-553I15 from 2, complete sequence
          Length = 152306

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 473  gaatcacagcagtctttagc 492
            ||||||||||||||||||||
Sbjct: 3639 gaatcacagcagtctttagc 3620
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>gb|AC008178.3| Homo sapiens BAC clone RP11-551O2 from 2, complete sequence
          Length = 113367

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    acacataaaagtaatcaaag 254
              ||||||||||||||||||||
Sbjct: 113267 acacataaaagtaatcaaag 113248
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>gb|AC154214.1| Mus musculus BAC clone RP24-129M18 from chromosome 17, complete
             sequence
          Length = 176792

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 501   ttggccctttgcacctgctt 520
             ||||||||||||||||||||
Sbjct: 48023 ttggccctttgcacctgctt 48042
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>gb|AC110780.3| Homo sapiens BAC clone RP11-357A22 from 2, complete sequence
          Length = 74085

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  acacataaaagtaatcaaag 254
            ||||||||||||||||||||
Sbjct: 1900 acacataaaagtaatcaaag 1881
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>gb|AC123953.4| Mus musculus chromosome UL clone RP23-234O13, complete sequence
          Length = 194728

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 456    atgcaaattccttgaaagaa 475
              ||||||||||||||||||||
Sbjct: 171264 atgcaaattccttgaaagaa 171245
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>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1078G07
          Length = 199457

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 404  attgtggatgcacagtcatt 423
            ||||||||||||||||||||
Sbjct: 9689 attgtggatgcacagtcatt 9670
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>emb|AL845427.11| Mouse DNA sequence from clone RP23-436J19 on chromosome 2, complete
              sequence
          Length = 168207

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     caaattacaagattacaaga 113
              ||||||||||||||||||||
Sbjct: 154111 caaattacaagattacaaga 154130
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>emb|AJ251224.1|BMU251224 Bungarus multicinctus partial b2 gene for beta-bungarotoxin B2,
           exons 1-2
          Length = 827

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 471 aagaatcacagcagtcttta 490
           ||||||||||||||||||||
Sbjct: 333 aagaatcacagcagtcttta 314
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>gb|AC007868.2|AC007868 Genomic Sequence for Homo sapiens clone 344N5, chromosome 8, complete
             sequence
          Length = 89820

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    aaagaatatgtaatctgaca 87
             ||||||||||||||||||||
Sbjct: 50609 aaagaatatgtaatctgaca 50590
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>dbj|AK070632.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055K01, full
           insert sequence
          Length = 1991

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 attgtggatgcacagtcatt 423
           ||||||||||||||||||||
Sbjct: 851 attgtggatgcacagtcatt 870
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>emb|CR383662.9| Zebrafish DNA sequence from clone DKEY-207J16 in linkage group 4,
             complete sequence
          Length = 174773

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    aaattacaagattacaagaa 114
             ||||||||||||||||||||
Sbjct: 31119 aaattacaagattacaagaa 31138
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>emb|AM050152.1| Bungarus multicinctus b4 chain gene for beta-bungarotoxin b4 chain
            precursor, exons 1-3, isolated from venom gland
          Length = 3243

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 471  aagaatcacagcagtcttta 490
            ||||||||||||||||||||
Sbjct: 1029 aagaatcacagcagtcttta 1010
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>emb|AM050151.1| Bungarus multicinctus b2 chain gene for beta-bungarotoxin b2 chain
            precursor, exons 1-3, isolated from venom gland
          Length = 4699

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 471  aagaatcacagcagtcttta 490
            ||||||||||||||||||||
Sbjct: 1030 aagaatcacagcagtcttta 1011
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>gb|AC132422.3| Mus musculus BAC clone RP23-302G15 from 12, complete sequence
          Length = 151358

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   tacaagaaggaaaatttcaa 126
             ||||||||||||||||||||
Sbjct: 85419 tacaagaaggaaaatttcaa 85400
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>gb|AC148005.3| Mus musculus BAC clone RP23-295O6 from 12, complete sequence
          Length = 151918

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   tacaagaaggaaaatttcaa 126
             ||||||||||||||||||||
Sbjct: 32912 tacaagaaggaaaatttcaa 32931
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>emb|AL672096.4| Mouse DNA sequence from clone RP23-293N20 on chromosome X, complete
            sequence
          Length = 179420

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 28   acaatcagcaaattctaagttggc 51
            |||||||||||||| |||||||||
Sbjct: 4294 acaatcagcaaattttaagttggc 4317


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,155,005
Number of Sequences: 3902068
Number of extensions: 5155005
Number of successful extensions: 95011
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94815
Number of HSP's gapped (non-prelim): 196
length of query: 548
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 525
effective length of database: 17,143,297,704
effective search space: 9000231294600
effective search space used: 9000231294600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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