ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd25n17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1B2_DAUCA (P37707) B2 protein 154 3e-37
2ALDO1_ARATH (Q7G193) Aldehyde oxidase 1 (EC 1.2.3.1) (AtAO-1) (A... 32 1.2
3AROK_XYLFA (Q9PDP4) Shikimate kinase (EC 2.7.1.71) (SK) 32 1.6
4IRG1_MOUSE (P54987) Immune-responsive protein 1 (Fragment) 32 2.1
5ALDO2_ARATH (Q7G192) Aldehyde oxidase 2 (EC 1.2.3.1) (AtAO-2) (A... 31 3.6
6ALDO4_ARATH (Q7G191) Aldehyde oxidase 4 (EC 1.2.3.1) (AtAO-4) (A... 30 4.7
7APBB3_HUMAN (O95704) Amyloid beta A4 precursor protein-binding f... 30 6.1
8AROC_SYNEL (Q8DLM1) Chorismate synthase (EC 4.2.3.5) (5-enolpyru... 30 8.0

>B2_DAUCA (P37707) B2 protein|
          Length = 207

 Score =  154 bits (388), Expect = 3e-37
 Identities = 69/92 (75%), Positives = 82/92 (89%)
 Frame = -3

Query: 643 LYNYTTHQLHGVFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRRLCKALEEDAFR 464
           LYNY+THQLHGVFEAASFGG+NIDPTAWEDKK +GESRFPAQVR+  R++C+ LEED+FR
Sbjct: 116 LYNYSTHQLHGVFEAASFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKICEPLEEDSFR 175

Query: 463 PVLHHYDGPKFRLELSIAETLSLLDLCKSEDA 368
           P+LHHYDGPKFRLEL+I E +SLLD+ +   A
Sbjct: 176 PILHHYDGPKFRLELNIPEAISLLDIFEETKA 207



to top

>ALDO1_ARATH (Q7G193) Aldehyde oxidase 1 (EC 1.2.3.1) (AtAO-1) (AtAO1)|
          Length = 1368

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
 Frame = -3

Query: 490 KALEEDAFRPV-------LHHYDGPKFRLELS-IAETLSLLDLCKSEDA*SA-----SEH 350
           KA++ED    +       +   +G +F LELS I  + +L+D  +++    +      E 
Sbjct: 4   KAIDEDKVEAMKSSKTSLVFAINGQRFELELSSIDPSTTLVDFLRNKTPFKSVKLGCGEG 63

Query: 349 GCGCSVVLFSKYHP 308
           GCG  VVL SKY P
Sbjct: 64  GCGACVVLLSKYDP 77



to top

>AROK_XYLFA (Q9PDP4) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 180

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 598 ASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRRLCKALEEDAFRPVLHHYD 443
           A+ GG+ +DP   E+++C  E  F   ++I +    + L  D +RP+L   D
Sbjct: 79  ATGGGTILDP---ENRRCMQERGFVVFLKINVNTQLERLAHDRYRPLLQQID 127



to top

>IRG1_MOUSE (P54987) Immune-responsive protein 1 (Fragment)|
          Length = 646

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 178 HLRGLLLPSTRSFLGEMQPPTNSLRFHGRRTEQNIVKTSSTTYR 309
           H  G LL    + L +++ P      +G+R   N++KTS TT++
Sbjct: 589 HCFGFLLHLPSNELSKVESPETETSVYGKRLVYNLIKTSPTTFK 632



to top

>ALDO2_ARATH (Q7G192) Aldehyde oxidase 2 (EC 1.2.3.1) (AtAO-2) (AtAO3)|
          Length = 1321

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = -3

Query: 445 DGPKFRLELSIAE-TLSLLDLCKSEDA*-----SASEHGCGCSVVLFSKYHP 308
           +G +F LELS  + + +LL+  + + +      S  E GCG  VVL SK+ P
Sbjct: 8   NGQRFELELSSVDPSTTLLEFLRYQTSFKSVKLSCGEGGCGACVVLLSKFDP 59



to top

>ALDO4_ARATH (Q7G191) Aldehyde oxidase 4 (EC 1.2.3.1) (AtAO-4) (AtAO2)|
          Length = 1337

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -3

Query: 445 DGPKFRLELSIAETLSLLDLCKSEDA*-----SASEHGCGCSVVLFSKYHP 308
           +G KF + LS+  + +LL+  +S         S  E GCG  +V+ SKY P
Sbjct: 11  NGEKFEV-LSVNPSTTLLEFLRSNTCFKSVKLSCGEGGCGACIVILSKYDP 60



to top

>APBB3_HUMAN (O95704) Amyloid beta A4 precursor protein-binding family B member|
           3 (Fe65-like protein 2) (Fe65L2)
          Length = 486

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +1

Query: 10  PPSLWGIHDASQQYPPHLSGGFPRWRRAYCTTNT*IRRTYRSPRLRTNGTNTETGSHLRG 189
           PP    IHDA+  Y  H+  G  +W+R           T+        GT TE    + G
Sbjct: 32  PPGWRKIHDAAGTYYWHVPSGSTQWQRP----------TWELGDAEDPGTGTE---GIWG 78

Query: 190 LLLPSTRSF--LGEMQPPTNSLRFHG 261
           L  P  RSF  L      +NSL ++G
Sbjct: 79  LRPPKGRSFSSLESSLDRSNSLSWYG 104



to top

>AROC_SYNEL (Q8DLM1) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 363

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +3

Query: 18  TLGHS*CITTVSPPSFGGVSPLAAGILHYKYINKENIQITEITDERHQHRDRLTS*RPTS 197
           T GH   +TT      GGV  +  G      +++ +IQ  +  D R   + RLT+ R  S
Sbjct: 4   TFGHLFRVTTFGESHGGGVGVVVDGCPPRLELSEVDIQ--KELDRRRPGQSRLTTPRQES 61

Query: 198 SKYQVLSG 221
            + ++LSG
Sbjct: 62  DRCEILSG 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,848,561
Number of Sequences: 219361
Number of extensions: 2552452
Number of successful extensions: 6203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6197
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top