ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26c14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DEOC_MYCMO (Q6KHA7) Deoxyribose-phosphate aldolase (EC 4.1.2.4) ... 32 1.3
2MTG8_MOUSE (Q61909) Protein CBFA2T1 (MTG8 protein) 30 6.4
3MTG8_HUMAN (Q06455) Protein CBFA2T1 (Protein MTG8) (Protein ETO)... 30 6.4
4E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 ... 30 8.3
5RIT1_YEAST (P23796) tRNA A64-2'-O-ribosylphosphate transferase (... 30 8.3

>DEOC_MYCMO (Q6KHA7) Deoxyribose-phosphate aldolase (EC 4.1.2.4)|
           (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA)
          Length = 217

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
 Frame = -2

Query: 462 NNMLDHVMLKNEASARRSN--IEEMNE----APLMSHGWIEVLLEQLEGKNSDV----VV 313
           NNM+DH +LK EA+ +  +  I E  E    +  ++  W++ + E+L+G  SDV    VV
Sbjct: 4   NNMIDHTLLKAEATTKDVDKLIAEAKEYGFKSVCVNSSWVKYVKEKLKG--SDVLVCAVV 61

Query: 312 MYGLGTMGI 286
            + LG M +
Sbjct: 62  GFPLGAMSM 70



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>MTG8_MOUSE (Q61909) Protein CBFA2T1 (MTG8 protein)|
          Length = 577

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +2

Query: 236 STLQSSYIDSQVEIASNMPIVPRPYITT----TSEFLPSSCSSRTSIHPWDINGA 388
           ST+  S +D + +     P +P P  T     TS F P++ ++ TS  P  +NGA
Sbjct: 9   STMPDSPVDVKTQSRLTPPAMPPPPTTQGAPRTSSFTPTTLTNGTSHSPTALNGA 63



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>MTG8_HUMAN (Q06455) Protein CBFA2T1 (Protein MTG8) (Protein ETO) (Eigth twenty|
           one protein) (Cyclin D-related protein) (Zinc finger
           MYND domain-containing protein 2)
          Length = 604

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +2

Query: 236 STLQSSYIDSQVEIASNMPIVPRPYITT----TSEFLPSSCSSRTSIHPWDINGA 388
           ST+  S +D + +     P +P P  T     TS F P++ ++ TS  P  +NGA
Sbjct: 36  STMPDSPVDVKTQSRLTPPTMPPPPTTQGAPRTSSFTPTTLTNGTSHSPTALNGA 90



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>E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 505

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
 Frame = +2

Query: 230 VKSTLQSSYIDSQVEIAS--NMPIVPRPYITTTSEFLPSSCSSRTSIHPWDINGASFISS 403
           +   L +S ++ +V+++S  +M I+P+P+  +TS F PS  ++   +  +  N  SF   
Sbjct: 138 IHKALVASNLNFKVKVSSPMSMDIMPKPFPPSTSTFSPSWNTTVYQLLQFLKNTGSFF-- 195

Query: 404 MFDLLALASFFNMT*SSILFPAERGIF 484
              +L    ++  T ++ +FP +  +F
Sbjct: 196 ---MLNAYPYYGYTTANGIFPLDYALF 219



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>RIT1_YEAST (P23796) tRNA A64-2'-O-ribosylphosphate transferase (EC 2.4.2.-)|
           (Initiator tRNA phosphoribosyl-transferase)
          Length = 513

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
 Frame = -2

Query: 372 HGWIEVLLEQLEGKNSDVVVMYGLGT---MGILLAI------STWLSM*EL*SV--LLTH 226
           HG I+ L    + K   +++    GT   +G++L+I        W+   EL  +  L+  
Sbjct: 424 HGEIQSLFTNRDEKIKPMLICCNTGTDMSIGVILSILCTKYTEEWMLTSELPDISKLIVR 483

Query: 225 YHLAEKLSHSNSHRVGPGRMKIREI 151
            HL + +SH     V P R  +  +
Sbjct: 484 KHLTKLISHLKGRNVNPSRATLNSV 508


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,677,987
Number of Sequences: 219361
Number of extensions: 1869771
Number of successful extensions: 3918
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3918
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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