Clone Information

BLAST Search Result

Clone Name	rbasd26c14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT009188.1\| Triticum aestivum clone wl1n.pk0143.a4:fis, full ...	726	0.0
2	ref\|XM_464678.1\| Oryza sativa (japonica cultivar-group), mRNA	113	8e-22
3	dbj\|AK072526.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	113	8e-22
4	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	111	3e-21
5	dbj\|AP004996.3\| Oryza sativa (japonica cultivar-group) genomic D...	111	3e-21
6	gb\|AY110018.1\| Zea mays CL347_1 mRNA sequence	98	4e-17
7	gb\|AC132256.3\| Mus musculus BAC clone RP24-358I7 from chromosome...	48	0.037
8	gb\|BC084229.1\| Xenopus laevis bestrophin-2b, mRNA (cDNA clone MG...	42	2.3
9	gb\|AC126932.4\| Mus musculus BAC clone RP24-80G20 from chromosome...	42	2.3
10	gb\|AY273826.1\| Xenopus laevis bestrophin-2b (VMD2L1) mRNA, compl...	42	2.3
11	gb\|AY273825.1\| Xenopus laevis bestrophin-2a (VMD2L1) mRNA, compl...	42	2.3
12	gb\|BC043854.1\| Xenopus laevis similar to vitelliform macular dys...	42	2.3
13	emb\|BX322552.6\| Zebrafish DNA sequence from clone DKEY-62E6 in l...	42	2.3
14	gb\|BC108874.1\| Xenopus laevis similar to vitelliform macular dys...	42	2.3
15	ref\|NM_179285.1\| Arabidopsis thaliana GPI-anchor transamidase/ c...	40	9.0
16	ref\|NM_202065.1\| Arabidopsis thaliana GPI-anchor transamidase/ c...	40	9.0
17	ref\|NM_100749.2\| Arabidopsis thaliana GPI-anchor transamidase/ c...	40	9.0
18	ref\|XM_526017.1\| PREDICTED: Pan troglodytes similar to PSST739 p...	40	9.0
19	gb\|AC149288.1\| Solanum demissum chromosome 5 clone PGEC446J10 ma...	40	9.0
20	gb\|AY730338.1\| Solanum tuberosum strain P6/210 clone BAC BA47f2,...	40	9.0
21	gb\|AE017197.1\| Rickettsia typhi str. Wilmington complete genome	40	9.0
22	ref\|XM_599529.1\| PREDICTED: Bos taurus similar to C32D5.6 (LOC52...	40	9.0
23	gb\|AC091458.5\| Mus musculus chromosome 12, clone RP23-68M8, comp...	40	9.0
24	gb\|AC146606.2\| Mus musculus BAC clone RP23-277P7 from chromosome...	40	9.0
25	gb\|AC122186.2\| Mus musculus BAC clone RP23-19M20 from 1, complet...	40	9.0
26	gb\|AC121958.3\| Mus musculus BAC clone RP24-241I3 from 15, comple...	40	9.0
27	gb\|BC058654.1\| Mus musculus cDNA clone IMAGE:6407251, partial cds	40	9.0
28	emb\|AJ293325.1\|RTY293325 Rickettsia typhi gltX2 gene (partial), ...	40	9.0
29	emb\|AL805940.7\| Mouse DNA sequence from clone RP24-286B19 on chr...	40	9.0
30	ref\|XM_937795.1\| PREDICTED: Homo sapiens hypothetical LOC402117 ...	40	9.0
31	ref\|XM_377783.3\| PREDICTED: Homo sapiens hypothetical LOC402117 ...	40	9.0
32	emb\|BX814274.1\|CNS0AAM9 Arabidopsis thaliana Full-length cDNA Co...	40	9.0
33	gb\|AC107218.4\| Homo sapiens BAC clone RP11-561A13 from 2, comple...	40	9.0
34	gb\|AC003981.2\|AC003981 Genomic sequence for Arabidopsis thaliana...	40	9.0
35	gb\|AC025578.26\| Homo sapiens 12 BAC RP11-340M11 (Roswell Park Ca...	40	9.0
36	gb\|AY084883.1\| Arabidopsis thaliana clone 120167 mRNA, complete ...	40	9.0
37	dbj\|AB063096.1\| Macaca fascicularis brain cDNA clone:QtrA-13554,...	40	9.0
38	dbj\|AK117596.1\| Arabidopsis thaliana At1g08750 mRNA for putative...	40	9.0
39	emb\|BX530058.4\| Zebrafish DNA sequence from clone DKEYP-89D7 in ...	40	9.0
40	gb\|AC005332.1\|AC005332 Homo sapiens chromosome 17, clone hRPK.14...	40	9.0
41	emb\|AL591207.15\| Mouse DNA sequence from clone RP23-392O3 on chr...	40	9.0

>gb|BT009188.1| Triticum aestivum clone wl1n.pk0143.a4:fis, full insert mRNA
           sequence
          Length = 1005

 Score =  726 bits (366), Expect = 0.0
 Identities = 480/522 (91%)
 Strand = Plus / Minus

                                                                       
Query: 130 acagaaagttgacctcccaagtatctctcttattttcattcttcctggtcccaccctgtg 189
           |||||| ||||||| || ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 788 acagaacgttgaccgccaaagtatctctcttcttttcattcttcttggtcccatcctgtg 729

                                                                       
Query: 190 agagttactatgactaagtttttctgcaagatgataatgtgttaagagcacacttcagag 249
           | ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 728 aaagttagtatgactaagtttttctgcaagaagatgatgtgttaagagcacacttcagag 669

                                                                       
Query: 250 ttcctacattgatagccaggttgaaattgccagcaatatgcccatagttcccagaccata 309
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 668 ttcctacattgatagccaggttcaaattgccagcaatatgcccatagttcccagaccata 609

                                                                       
Query: 310 catcacaacaacatcagaatttttgccttccagctgttctagcaggacctcgatccatcc 369
           ||||||||||||||||||||||||| |||||||||| ||||||||||||||  |||||||
Sbjct: 608 catcacaacaacatcagaatttttgtcttccagctgctctagcaggacctctgtccatcc 549

                                                                       
Query: 370 atgggacattaatggtgcctcattcatctcttctatgttcgatcttcttgcactagcctc 429
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atgggacattaattgtgcctcattcatctcttctatgttcgatcttcttgcactagcctc 489

                                                                       
Query: 430 attctttaacatgacatgatcaagcatattgtttccggcagaaaggggaatttttgcgtt 489
           ||||| | |||||||||||||||| ||||| ||||| ||||||||||| | ||  |||| 
Sbjct: 488 attctgtgacatgacatgatcaagtatattatttcctgcagaaagggggagttccgcgtc 429

                                                                       
Query: 490 atgtgcagctaggaagcctgtgtaggctgaatcagtgtggatagtcttcatgactgatcc 549
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atgtgcagctagaaagcctgtgtaggctgaatcagtgtggatagtcttcatgactgatcc 369

                                                                       
Query: 550 aaagaaatttgtcactgggacctnntttaaggcacgcttgtaaagatccattcnataata 609
           |||||||||||||||||||||||  ||||| |||||||||||||||||||||| ||||||
Sbjct: 368 aaagaaatttgtcactgggacctcgtttaatgcacgcttgtaaagatccattcgataata 309

                                                     
Query: 610 tgcannanacannannatggaagggtcnnatgatttgaaaag 651
           ||||  | |||  |  || ||||||||  |||| ||||||||
Sbjct: 308 tgcagtagacagcagcatagaagggtcgtatgagttgaaaag 267



 Score =  121 bits (61), Expect = 3e-24
 Identities = 80/85 (94%), Gaps = 1/85 (1%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaaacatatcgagctacttatccaaaaaatagagcgtaccatgcgaaaactacatacaac 75
           ||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 895 gaaacatatcgagctacgtatccaaaaagtagagggtaccatgcgaaaactacatacaac 836

                                    
Query: 76  aattatgttccaaactgactggatg 100
           |||| ||||||||||||| ||||||
Sbjct: 835 aatt-tgttccaaactgaatggatg 812

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>ref|XM_464678.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1587

 Score =  113 bits (57), Expect = 8e-22
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                        
Query: 493  tgcagctaggaagcctgtgtaggctgaatcagtgtggatagtcttcatgactgatccaaa 552
            |||||||| |||||||| |||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 1130 tgcagctaagaagcctgagtaggcagaatctgtgtggatagtattcatgactgatccaaa 1071

                                       
Query: 553  gaaatttgtcactgggacctnntttaa 579
            |||||||||||| |||||||  |||||
Sbjct: 1070 gaaatttgtcacagggacctcatttaa 1044



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 152/188 (80%)
 Strand = Plus / Minus

                                                                        
Query: 253  ctacattgatagccaggttgaaattgccagcaatatgcccatagttcccagaccatacat 312
            ||||||||||| ||||||||||||||| | || ||| ||||| |||||||||||||||||
Sbjct: 1370 ctacattgataaccaggttgaaattgctaacagtatacccattgttcccagaccatacat 1311

                                                                        
Query: 313  cacaacaacatcagaatttttgccttccagctgttctagcaggacctcgatccatccatg 372
             |||| |   |||| ||| ||| | || |||||||| ||||| || ||  |||| |||||
Sbjct: 1310 gacaatagtgtcagcattcttgacatcaagctgttccagcagaacatctgtccacccatg 1251

                                                                        
Query: 373  ggacattaatggtgcctcattcatctcttctatgttcgatcttcttgcactagcctcatt 432
            |||| ||| | |||| || ||||  ||||| ||||| |||||||||   ||||||| |||
Sbjct: 1250 ggaccttacttgtgcttctttcacttcttcaatgtttgatcttctttggctagccttatt 1191

                    
Query: 433  ctttaaca 440
            || |||||
Sbjct: 1190 ctgtaaca 1183

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>dbj|AK072526.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023126A08, full
            insert sequence
          Length = 1587

 Score =  113 bits (57), Expect = 8e-22
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                        
Query: 493  tgcagctaggaagcctgtgtaggctgaatcagtgtggatagtcttcatgactgatccaaa 552
            |||||||| |||||||| |||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 1130 tgcagctaagaagcctgagtaggcagaatctgtgtggatagtattcatgactgatccaaa 1071

                                       
Query: 553  gaaatttgtcactgggacctnntttaa 579
            |||||||||||| |||||||  |||||
Sbjct: 1070 gaaatttgtcacagggacctcatttaa 1044



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 152/188 (80%)
 Strand = Plus / Minus

                                                                        
Query: 253  ctacattgatagccaggttgaaattgccagcaatatgcccatagttcccagaccatacat 312
            ||||||||||| ||||||||||||||| | || ||| ||||| |||||||||||||||||
Sbjct: 1370 ctacattgataaccaggttgaaattgctaacagtatacccattgttcccagaccatacat 1311

                                                                        
Query: 313  cacaacaacatcagaatttttgccttccagctgttctagcaggacctcgatccatccatg 372
             |||| |   |||| ||| ||| | || |||||||| ||||| || ||  |||| |||||
Sbjct: 1310 gacaatagtgtcagcattcttgacatcaagctgttccagcagaacatctgtccacccatg 1251

                                                                        
Query: 373  ggacattaatggtgcctcattcatctcttctatgttcgatcttcttgcactagcctcatt 432
            |||| ||| | |||| || ||||  ||||| ||||| |||||||||   ||||||| |||
Sbjct: 1250 ggaccttacttgtgcttctttcacttcttcaatgtttgatcttctttggctagccttatt 1191

                    
Query: 433  ctttaaca 440
            || |||||
Sbjct: 1190 ctgtaaca 1183

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  111 bits (56), Expect = 3e-21
 Identities = 74/80 (92%)
 Strand = Plus / Plus

                                                                           
Query: 493     tgcagctaggaagcctgtgtaggctgaatcagtgtggatagtcttcatgactgatccaaa 552
               |||||||| |||||||| |||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 6668488 tgcagctaagaagcctgagtaggcagaatctgtgtggatagtattcatgactgatccaaa 6668547

                                   
Query: 553     gaaatttgtcactgggacct 572
               |||||||||||| |||||||
Sbjct: 6668548 gaaatttgtcacagggacct 6668567



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                           
Query: 253     ctacattgatagccaggttgaaattgccagcaatatgcccatagttcccagaccatacat 312
               ||||||||||| ||||||||||||||| | || ||| ||||| |||||||||||||||||
Sbjct: 6668179 ctacattgataaccaggttgaaattgctaacagtatacccattgttcccagaccatacat 6668238

                    
Query: 313     cacaa 317
                ||||
Sbjct: 6668239 gacaa 6668243

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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0027A02
          Length = 140402

 Score =  111 bits (56), Expect = 3e-21
 Identities = 74/80 (92%)
 Strand = Plus / Plus

                                                                          
Query: 493    tgcagctaggaagcctgtgtaggctgaatcagtgtggatagtcttcatgactgatccaaa 552
              |||||||| |||||||| |||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 102863 tgcagctaagaagcctgagtaggcagaatctgtgtggatagtattcatgactgatccaaa 102922

                                  
Query: 553    gaaatttgtcactgggacct 572
              |||||||||||| |||||||
Sbjct: 102923 gaaatttgtcacagggacct 102942



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                          
Query: 253    ctacattgatagccaggttgaaattgccagcaatatgcccatagttcccagaccatacat 312
              ||||||||||| ||||||||||||||| | || ||| ||||| |||||||||||||||||
Sbjct: 102554 ctacattgataaccaggttgaaattgctaacagtatacccattgttcccagaccatacat 102613

                   
Query: 313    cacaa 317
               ||||
Sbjct: 102614 gacaa 102618

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>gb|AY110018.1| Zea mays CL347_1 mRNA sequence
          Length = 1688

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 85/97 (87%)
 Strand = Plus / Minus

                                                                        
Query: 252  cctacattgatagccaggttgaaattgccagcaatatgcccatagttcccagaccataca 311
            |||||||||||| ||||||||||| ||||| || ||| ||||||| ||||||||||||||
Sbjct: 1393 cctacattgataaccaggttgaaagtgccaacagtatacccatagctcccagaccataca 1334

                                                 
Query: 312  tcacaacaacatcagaatttttgccttccagctgttc 348
            ||||||||  ||||| ||| || || |||||||||||
Sbjct: 1333 tcacaacagtatcagtattctttccctccagctgttc 1297



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 506  cctgtgtaggctgaatcagtgtggatagtcttcatgactgatcc 549
            ||||||||||||||||||||||||| |||  |||||||||||||
Sbjct: 1145 cctgtgtaggctgaatcagtgtggagagtggtcatgactgatcc 1102



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 590  taaagatccattcnataatatgca 613
            ||||||||||||| ||||||||||
Sbjct: 1052 taaagatccattcgataatatgca 1029

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>gb|AC132256.3| Mus musculus BAC clone RP24-358I7 from chromosome 8, complete sequence
          Length = 163897

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 218   agatgataatgtgttaagagcaca 241
             ||||||||||||||||||||||||
Sbjct: 13617 agatgataatgtgttaagagcaca 13594

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>gb|BC084229.1| Xenopus laevis bestrophin-2b, mRNA (cDNA clone MGC:81437
            IMAGE:6635660), complete cds
          Length = 2064

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 387  cctcattcatctcttctatgt 407
            |||||||||||||||||||||
Sbjct: 1340 cctcattcatctcttctatgt 1320

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>gb|AC126932.4| Mus musculus BAC clone RP24-80G20 from chromosome 3, complete sequence
          Length = 214712

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 388   ctcattcatctcttctatgtt 408
             |||||||||||||||||||||
Sbjct: 82443 ctcattcatctcttctatgtt 82423

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>gb|AY273826.1| Xenopus laevis bestrophin-2b (VMD2L1) mRNA, complete cds
          Length = 1650

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 387  cctcattcatctcttctatgt 407
            |||||||||||||||||||||
Sbjct: 1205 cctcattcatctcttctatgt 1185

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>gb|AY273825.1| Xenopus laevis bestrophin-2a (VMD2L1) mRNA, complete cds
          Length = 1921

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 387  cctcattcatctcttctatgt 407
            |||||||||||||||||||||
Sbjct: 1230 cctcattcatctcttctatgt 1210

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>gb|BC043854.1| Xenopus laevis similar to vitelliform macular dystrophy 2-like
            protein 1, mRNA (cDNA clone MGC:53680 IMAGE:4888788),
            complete cds
          Length = 1898

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 387  cctcattcatctcttctatgt 407
            |||||||||||||||||||||
Sbjct: 1193 cctcattcatctcttctatgt 1173

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>emb|BX322552.6| Zebrafish DNA sequence from clone DKEY-62E6 in linkage group 6,
             complete sequence
          Length = 230846

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 194   ttactatgactaagtttttct 214
             |||||||||||||||||||||
Sbjct: 26319 ttactatgactaagtttttct 26339

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>gb|BC108874.1| Xenopus laevis similar to vitelliform macular dystrophy 2-like
            protein 1, mRNA (cDNA clone MGC:132361 IMAGE:3401219),
            complete cds
          Length = 1925

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 387  cctcattcatctcttctatgt 407
            |||||||||||||||||||||
Sbjct: 1219 cctcattcatctcttctatgt 1199

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>ref|NM_179285.1| Arabidopsis thaliana GPI-anchor transamidase/ cysteine-type
           endopeptidase/ legumain AT1G08750 transcript variant
           AT1G08750.2 mRNA, complete cds
          Length = 1388

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 510 tgtaggctgaatcagtgtggatagtcttcatgactgatccaaagaaatttgt 561
           |||| ||||||||||| || || |||| ||| ||||| || |||||||||||
Sbjct: 974 tgtaagctgaatcagtatgaatggtctccataactgaaccgaagaaatttgt 923

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>ref|NM_202065.1| Arabidopsis thaliana GPI-anchor transamidase/ cysteine-type
           endopeptidase/ legumain AT1G08750 transcript variant
           AT1G08750.3 mRNA, complete cds
          Length = 1413

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 510 tgtaggctgaatcagtgtggatagtcttcatgactgatccaaagaaatttgt 561
           |||| ||||||||||| || || |||| ||| ||||| || |||||||||||
Sbjct: 999 tgtaagctgaatcagtatgaatggtctccataactgaaccgaagaaatttgt 948

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>ref|NM_100749.2| Arabidopsis thaliana GPI-anchor transamidase/ cysteine-type
            endopeptidase/ legumain AT1G08750 transcript variant
            AT1G08750.1 mRNA, complete cds
          Length = 1528

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 510  tgtaggctgaatcagtgtggatagtcttcatgactgatccaaagaaatttgt 561
            |||| ||||||||||| || || |||| ||| ||||| || |||||||||||
Sbjct: 1114 tgtaagctgaatcagtatgaatggtctccataactgaaccgaagaaatttgt 1063

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>ref|XM_526017.1| PREDICTED: Pan troglodytes similar to PSST739 protein (LOC470636),
           mRNA
          Length = 669

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 528 ggatagtcttcatgactgat 547
           ||||||||||||||||||||
Sbjct: 89  ggatagtcttcatgactgat 70

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>gb|AC149288.1| Solanum demissum chromosome 5 clone PGEC446J10 map MAP_LOC, complete
             sequence
          Length = 102692

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   cacagaaagttgacctccca 148
             ||||||||||||||||||||
Sbjct: 64133 cacagaaagttgacctccca 64152

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>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence
          Length = 81567

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   cacagaaagttgacctccca 148
             ||||||||||||||||||||
Sbjct: 16530 cacagaaagttgacctccca 16549

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>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome
          Length = 1111496

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 206    agtttttctgcaagatgataatgtgtta 233
              |||||||||||||  |||||||||||||
Sbjct: 806098 agtttttctgcaatttgataatgtgtta 806125

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>ref|XM_599529.1| PREDICTED: Bos taurus similar to C32D5.6 (LOC521269), mRNA
          Length = 1767

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 257  attgatagccaggttgaaat 276
            ||||||||||||||||||||
Sbjct: 1409 attgatagccaggttgaaat 1390

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>gb|AC091458.5| Mus musculus chromosome 12, clone RP23-68M8, complete sequence
          Length = 289751

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    caattatgttccaaactgactgga 98
             |||||||||||||||||| |||||
Sbjct: 96186 caattatgttccaaactgcctgga 96163

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>gb|AC146606.2| Mus musculus BAC clone RP23-277P7 from chromosome 15, complete sequence
          Length = 171208

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   tcttattttcattcttcctg 176
             ||||||||||||||||||||
Sbjct: 27838 tcttattttcattcttcctg 27857

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>gb|AC122186.2| Mus musculus BAC clone RP23-19M20 from 1, complete sequence
          Length = 160653

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 241   acttcagagttcctacattgatag 264
             |||||||||||||||||| |||||
Sbjct: 51459 acttcagagttcctacatagatag 51436

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>gb|AC121958.3| Mus musculus BAC clone RP24-241I3 from 15, complete sequence
          Length = 159574

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   tcttattttcattcttcctg 176
             ||||||||||||||||||||
Sbjct: 83096 tcttattttcattcttcctg 83077

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>gb|BC058654.1| Mus musculus cDNA clone IMAGE:6407251, partial cds
          Length = 4560

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 75   caattatgttccaaactgactgga 98
            |||||||||||||||||| |||||
Sbjct: 3647 caattatgttccaaactgcctgga 3624

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>emb|AJ293325.1|RTY293325 Rickettsia typhi gltX2 gene (partial), spoTb gene, spoTc gene and
            groEL gene (partial)
          Length = 6442

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 206  agtttttctgcaagatgataatgtgtta 233
            |||||||||||||  |||||||||||||
Sbjct: 5396 agtttttctgcaatttgataatgtgtta 5423

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>emb|AL805940.7| Mouse DNA sequence from clone RP24-286B19 on chromosome 4, complete
             sequence
          Length = 128829

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     cataaaaatgacctgaaaca 21
             ||||||||||||||||||||
Sbjct: 58708 cataaaaatgacctgaaaca 58689

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>ref|XM_937795.1| PREDICTED: Homo sapiens hypothetical LOC402117 (LOC402117), mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 528 ggatagtcttcatgactgat 547
           ||||||||||||||||||||
Sbjct: 89  ggatagtcttcatgactgat 70

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>ref|XM_377783.3| PREDICTED: Homo sapiens hypothetical LOC402117 (LOC402117), mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 528 ggatagtcttcatgactgat 547
           ||||||||||||||||||||
Sbjct: 89  ggatagtcttcatgactgat 70

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>emb|BX814274.1|CNS0AAM9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB65ZF09 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1372

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 510  tgtaggctgaatcagtgtggatagtcttcatgactgatccaaagaaatttgt 561
            |||| ||||||||||| || || |||| ||| ||||| || |||||||||||
Sbjct: 1007 tgtaagctgaatcagtatgaatggtctccataactgaaccgaagaaatttgt 956

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>gb|AC107218.4| Homo sapiens BAC clone RP11-561A13 from 2, complete sequence
          Length = 164620

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 528  ggatagtcttcatgactgat 547
            ||||||||||||||||||||
Sbjct: 5626 ggatagtcttcatgactgat 5607

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>gb|AC003981.2|AC003981 Genomic sequence for Arabidopsis thaliana BAC F22O13 from chromosome I,
              complete sequence
          Length = 133843

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                  
Query: 510    tgtaggctgaatcagtgtggatagtcttcatgactgatccaaagaaatttgt 561
              |||| ||||||||||| || || |||| ||| ||||| || |||||||||||
Sbjct: 101861 tgtaagctgaatcagtatgaatggtctccataactgaaccgaagaaatttgt 101810

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>gb|AC025578.26| Homo sapiens 12 BAC RP11-340M11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 115528

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   tttttctgcaagatgataat 227
             ||||||||||||||||||||
Sbjct: 77454 tttttctgcaagatgataat 77435

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>gb|AY084883.1| Arabidopsis thaliana clone 120167 mRNA, complete sequence
          Length = 1490

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 510  tgtaggctgaatcagtgtggatagtcttcatgactgatccaaagaaatttgt 561
            |||| ||||||||||| || || |||| ||| ||||| || |||||||||||
Sbjct: 1114 tgtaagctgaatcagtatgaatggtctccataactgaaccgaagaaatttgt 1063

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>dbj|AB063096.1| Macaca fascicularis brain cDNA clone:QtrA-13554, full insert
           sequence
          Length = 1819

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 528 ggatagtcttcatgactgat 547
           ||||||||||||||||||||
Sbjct: 878 ggatagtcttcatgactgat 859

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>dbj|AK117596.1| Arabidopsis thaliana At1g08750 mRNA for putative GPI-anchor
           transamidase, complete cds, clone: RAFL17-24-C13
          Length = 1353

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 510 tgtaggctgaatcagtgtggatagtcttcatgactgatccaaagaaatttgt 561
           |||| ||||||||||| || || |||| ||| ||||| || |||||||||||
Sbjct: 974 tgtaagctgaatcagtatgaatggtctccataactgaaccgaagaaatttgt 923

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>emb|BX530058.4| Zebrafish DNA sequence from clone DKEYP-89D7 in linkage group 19,
             complete sequence
          Length = 199529

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   cacacttcagagttcctaca 257
             ||||||||||||||||||||
Sbjct: 92490 cacacttcagagttcctaca 92471

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>gb|AC005332.1|AC005332 Homo sapiens chromosome 17, clone hRPK.147_L_13, complete sequence
          Length = 216631

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 412   tcttcttgcactagcctcat 431
             ||||||||||||||||||||
Sbjct: 22986 tcttcttgcactagcctcat 22967

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>emb|AL591207.15| Mouse DNA sequence from clone RP23-392O3 on chromosome 12, complete
             sequence
          Length = 211056

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    caattatgttccaaactgactgga 98
             |||||||||||||||||| |||||
Sbjct: 11405 caattatgttccaaactgcctgga 11428


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,943,319
Number of Sequences: 3902068
Number of extensions: 5943319
Number of successful extensions: 101071
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100945
Number of HSP's gapped (non-prelim): 125
length of query: 661
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 638
effective length of database: 17,143,297,704
effective search space: 10937423935152
effective search space used: 10937423935152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result