>NORK_MEDTR (Q8L4H4) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does|
           not make infections protein 2) (Symbiosis receptor-like
           kinase) (MtSYMRK)
          Length = 925

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 2/153 (1%)
 Frame = +1

Query: 22  DADIPWXPYDRFWEQWQYNSYPLINLNTSSQVEILPGNDYFNVPMAIFQEAMTLDPSYTS 201
           D   P    DR W++ +  S P   L  S  V  +   D    P+ + Q A+T       
Sbjct: 201 DIRFPDDQNDRIWKRKE-TSTPTSALPLSFNVSNVDLKDSVTPPLQVLQTALTHPER--- 256

Query: 202 MWLTMEKNNVDSKSVRLLPIFHFAEINGS--NPNRRFDIYNAGDLLHRGFSPSLLQANSL 375
             L    + +++         HF E+NG+     R FDIY   ++    F      + + 
Sbjct: 257 --LEFVHDGLETDDYEYSVFLHFLELNGTVRAGQRVFDIYLNNEIKKEKFDVLAGGSKNS 314

Query: 376 YDSGQFLYNGDAFYTLNKTRGSDLPPLINAFEI 474
           Y +     NG    TL K  GS+  PL+NA+EI
Sbjct: 315 YTALNISANGSLNITLVKASGSEFGPLLNAYEI 347

>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)|
          Length = 924

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 4/155 (2%)
 Frame = +1

Query: 22  DADIPWXPYDRFWEQWQYNSYPLINLNTSSQVEILPGNDYFNVPMAIFQEAMTLDPSYTS 201
           D   P    DR W+     SY L      S VE+   N     P+ + Q A+T       
Sbjct: 201 DIRFPVDQNDRIWKATSTPSYALPLSFNVSNVEL---NGKVTPPLQVLQTALTHPERLEF 257

Query: 202 MWLTMEKNNVDSKSVRLLPIFHFAEINGSNP--NRRFDIYNAGDLLHRGFSPSLLQANSL 375
           + + +E ++ +        + +F E+N +     R FDIY   ++   GF   +L+  S 
Sbjct: 258 VHVGLETDDYEYSV-----LLYFLELNDTLKAGQRVFDIYLNSEIKKEGFD--VLEGGSK 310

Query: 376 YDSG--QFLYNGDAFYTLNKTRGSDLPPLINAFEI 474
           Y         NG    TL K  GS   PL+NA+EI
Sbjct: 311 YSYTVLNISANGSLNITLVKASGSKFGPLLNAYEI 345

>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor|
          Length = 1161

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 36/138 (26%), Positives = 47/138 (34%), Gaps = 4/138 (2%)
 Frame = +2

Query: 206 GLPWKRTMSTPRVS-AFSRSSI---LLKSMVATRTEGSTSTTPAICCTEASPRPFYRPTA 373
           G+PW  T   P +S A S+  I   +  S   T T+ STSTTP    T  +      PT 
Sbjct: 96  GVPWYSTRLKPAISSALSKDGIYTAIPTSTSTTTTKSSTSTTPTTTITSTTSTTSTTPTT 155

Query: 374 CMTAGNSCITATRSTP*IRRAAQTCPXXXXXXXXXXXFGWKTSPLPPRMVRSIIDVHTPA 553
             T+     + T +TP       T P               T+P       S        
Sbjct: 156 STTSTTPTTSTTSTTP-TTSTTSTTPTTSTTSTTPTTSTTSTTP-----TTSTTSTTPTT 209

Query: 554 P*PSTRPLTAAPXFAPRT 607
              ST P T+     P T
Sbjct: 210 STTSTTPTTSTTSTTPTT 227



 Score = 34.7 bits (78), Expect = 0.28
 Identities = 30/106 (28%), Positives = 44/106 (41%)
 Frame = +2

Query: 134 TTTSMCRWPSSRKP*P*TQATPPCGLPWKRTMSTPRVSAFSRSSILLKSMVATRTEGSTS 313
           +TTS     S+    P T  T     P   T ST   ++ + ++    +   T T  +TS
Sbjct: 156 STTSTTPTTSTTSTTPTTSTTSTT--PTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTS 213

Query: 314 TTPAICCTEASPRPFYRPTACMTAGNSCITATRSTP*IRRAAQTCP 451
           TTP    T  +P     PT   T+  S  T+T+ST     +  T P
Sbjct: 214 TTPTTSTTSTTPTTSTTPTTSTTSTTS-QTSTKSTTPTTSSTSTTP 258



 Score = 31.2 bits (69), Expect = 3.1
 Identities = 36/160 (22%), Positives = 53/160 (33%)
 Frame = +2

Query: 134 TTTSMCRWPSSRKP*P*TQATPPCGLPWKRTMSTPRVSAFSRSSILLKSMVATRTEGSTS 313
           T+T+     +S  P   T +T P       T +TP  S  S +     +   T T  +TS
Sbjct: 176 TSTTPTTSTTSTTPTTSTTSTTPTT---STTSTTPTTSTTSTTP----TTSTTSTTPTTS 228

Query: 314 TTPAICCTEASPRPFYRPTACMTAGNSCITATRSTP*IRRAAQTCPXXXXXXXXXXXFGW 493
           TTP    T  + +   + T   T+  S    T +TP       T P              
Sbjct: 229 TTPTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTP-TTSTTSTAPTTSTTSTTSTTSTI 287

Query: 494 KTSPLPPRMVRSIIDVHTPAP*PSTRPLTAAPXFAPRTRP 613
            T+P       +       A    +   T +  FA  T P
Sbjct: 288 STAPTTSTTSSTFSTSSASASSVISTTATTSTTFASLTTP 327

>SIRK_ARATH (O64483) Senescence-induced receptor-like serine/threonine-protein|
           kinase precursor (FLG22-induced receptor-like kinase 1)
          Length = 876

 Score = 37.0 bits (84), Expect = 0.057
 Identities = 42/148 (28%), Positives = 58/148 (39%), Gaps = 2/148 (1%)
 Frame = +1

Query: 46  YDRFWEQWQYNSYPLINLNTSSQVEILPGNDYFNVPMAIFQEAMTLDPSYTSMWLTMEKN 225
           YDR W     +S   I LNTS  V+    N Y      +   A T      S++LT+   
Sbjct: 217 YDRIWTPRIVSSEYKI-LNTSLTVDQFLNNGY-QPASTVMSTAETARNE--SLYLTLSFR 272

Query: 226 NVDSKSVRLLPIFHFAEIN--GSNPNRRFDIYNAGDLLHRGFSPSLLQANSLYDSGQFLY 399
             D  + +     HFAEI    SN  R F I+   D++   F    L  ++         
Sbjct: 273 PPDPNA-KFYVYMHFAEIEVLKSNQTREFSIWLNEDVISPSFKLRYLLTDTFVTPDPVSG 331

Query: 400 NGDAFYTLNKTRGSDLPPLINAFEIYSL 483
               F  L       LPP+INA E+Y +
Sbjct: 332 ITINFSLLQPPGEFVLPPIINALEVYQV 359

>Y215_ADE02 (P03291) Hypothetical protein F-215|
          Length = 215

 Score = 36.2 bits (82), Expect = 0.096
 Identities = 53/202 (26%), Positives = 69/202 (34%), Gaps = 19/202 (9%)
 Frame = +2

Query: 131 ATTTSMCRWPSSRKP*P*TQATPPCGL-------------PWKRTMSTPRVSAFSRSSIL 271
           A+T S   WP+S    P   + P   +             P K T  T R       S  
Sbjct: 16  ASTPSRSSWPASPTTSPPPWSEPDAEISRRKRSSSSWPKSPIKTTQETCRRFCARPPSTT 75

Query: 272 LKSMVATRTEGSTSTTPAICCTEASPRPFYRPTACMTAGNSCITATRSTP*IRRAAQTCP 451
            K +++    GS+S  P+     A    F R TA   +  S  T+ RST    RAA TCP
Sbjct: 76  PKLILSNSLSGSSSPGPSSSRRGAR---FRRSTAA--SSRSPATSARSTSSCPRAAPTCP 130

Query: 452 XXXXXXXXXXXFGWKTSPLPPRMVRSIIDVHTPAP*PSTRPLTAAPXFAP------RTRP 613
                      +     P      R II  H   P P+ R  + A    P      R +P
Sbjct: 131 CPLSRRVPSPPY--LRGPARVTAFRCIIQGHPRGPPPAARYRSRAAGMRPLASHRRRHQP 188

Query: 614 GLFRWWSCGERGRANPRRAGSP 679
                 S G   R +P   G P
Sbjct: 189 APGNQVSPGPSPRPDPAMRGKP 210

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 45/176 (25%), Positives = 66/176 (37%), Gaps = 4/176 (2%)
 Frame = +2

Query: 134  TTTSMCRWPSSRKP*P*TQATPPCGLPWKRTMSTPRVSAFSRSSILLKSMVATRTEGSTS 313
            TTT     PSS    P T  TPP    W  T +TP  S  + +   +     T T  +T+
Sbjct: 3811 TTTGFTVTPSSS---PGTARTPPV---WISTTTTPTTSGSTVTPSSIPGTTHTPTVLTTT 3864

Query: 314  TTPAICCTEASPRPFYR----PTACMTAGNSCITATRSTP*IRRAAQTCPXXXXXXXXXX 481
            T P    + A+P    +    P + +T   + ITAT ST        T P          
Sbjct: 3865 TQPVATGSMATPSSSTQTSGTPPSLITTATT-ITATGSTTNPSSTPGTTPIPPELTTTAT 3923

Query: 482  XFGWKTSPLPPRMVRSIIDVHTPAP*PSTRPLTAAPXFAPRTRPGLFRWWSCGERG 649
                 +S + P    ++   HTP P P+T   T     +P +   +   W+    G
Sbjct: 3924 TPAATSSTVTPS--SALGTTHTP-PVPNTTATTHGRSLSPSSPHTVRTAWTSATSG 3976



 Score = 31.2 bits (69), Expect = 3.1
 Identities = 37/166 (22%), Positives = 52/166 (31%), Gaps = 2/166 (1%)
 Frame = +2

Query: 116  WRFSRATTTSMCRWPSSRKP*P*TQATPPCGLPWKRTMSTPRVSAFSRSSILLKSMVATR 295
            W  ++ TTT+     +     P +   PP G P   T +T      S+++       AT 
Sbjct: 3661 WILTKLTTTATTTESTGSTATPSSTQGPPAGTPHVSTTATTPTVTSSKATPFSSPGTATA 3720

Query: 296  TEG--STSTTPAICCTEASPRPFYRPTACMTAGNSCITATRSTP*IRRAAQTCPXXXXXX 469
                 ST+TTP      A P      T    +  +   AT ST       +T        
Sbjct: 3721 LPALRSTATTPTATSFTAIPSSSLGTTWTRLSQTTTPMATMSTATPSSTPETVHTSTVLT 3780

Query: 470  XXXXXFGWKTSPLPPRMVRSIIDVHTPAP*PSTRPLTAAPXFAPRT 607
                  G   S   P          T  P  +T   T  P  +P T
Sbjct: 3781 TTATTTGATGSVATPSSTPGTAHT-TKVPTTTTTGFTVTPSSSPGT 3825

>ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arabidopsis|
           thaliana envelope membrane integrase) (Ath4)
           (ALBINO3-like protein 1)
          Length = 1013

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 7/154 (4%)
 Frame = +1

Query: 37  WXPYDRFWEQWQYNSYPLINLNTSSQVEILPGNDYFNVPMAIFQEAMTLDPSYTSMWLTM 216
           W PYD +   W   S    +L +S+      G D  N P  I      L  S++   +  
Sbjct: 242 WFPYDPYDRIWMPASVFASHLTSSATSIDTTGAD--NRPPEII-----LRTSWSQKDMAF 294

Query: 217 EKNNVDSKSVRLLPIFHFAE--INGSNPNRRFDIYN-----AGDLLHRGFSPSLLQANSL 375
               +    V    + +F+E    GS+  R F++Y        DL+   F  ++ QA SL
Sbjct: 295 YDIKLPFSGVTFYIVIYFSEPLSLGSDQKRSFNVYYEDKQVGSDLIVPPFG-AVTQA-SL 352

Query: 376 YDSGQFLYNGDAFYTLNKTRGSDLPPLINAFEIY 477
            D    +    A+ T   T  S L PLINA E+Y
Sbjct: 353 RD---VVKTELAYLTFEATPDSTLDPLINALELY 383

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 40/157 (25%), Positives = 57/157 (36%), Gaps = 5/157 (3%)
 Frame = +2

Query: 134  TTTSMCRWPSSRKP*P*TQATPPCGLPWKRTMST----PRVSAFSRSSILLKSMVATRTE 301
            TTT      ++  P P T  +PP   P     ST    P  +     +        T   
Sbjct: 1599 TTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPS 1658

Query: 302  GSTSTTPAI-CCTEASPRPFYRPTACMTAGNSCITATRSTP*IRRAAQTCPXXXXXXXXX 478
              T+TTP+    T  +P P   P++ +T   S  T T +TP    +  T P         
Sbjct: 1659 PPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTP----SPTTTPSSPITTTTT 1714

Query: 479  XXFGWKTSPLPPRMVRSIIDVHTPAP*PSTRPLTAAP 589
                   SP PP  + +     TP+P P+T   T  P
Sbjct: 1715 PSSTTTPSP-PPTTMTTPSPTTTPSP-PTTTMTTLPP 1749

>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein|
           stubble-stubbloid) [Contains: Serine proteinase stubble
           non-catalytic chain; Serine proteinase stubble catalytic
           chain]
          Length = 787

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
 Frame = +2

Query: 125 SRATTTSMCRWPSSRKP*P*-----TQATPPCGLPWKRTMSTPRVSAFSRSSILLKSMVA 289
           S +TT++   WP+   P         Q +P   L    +   P  +  + SS    +   
Sbjct: 361 STSTTSTSLIWPAQTHPPQPHRPTRPQLSPGTSLAASSSSHWPSSTTSTTSSTTSTTTTT 420

Query: 290 TRTEGSTS--TTPAICCTEASPRPFYRPTACMTAGNSCITATRSTP 421
           T T  +T+  TT     T    RP+ RPT   T+ +S  T +  TP
Sbjct: 421 TTTRRTTTPTTTTRRTTTNKPTRPYQRPTTA-TSSSSTSTTSSKTP 465

>LUCI_LUCCR (P13129) Luciferin 4-monooxygenase (EC 1.13.12.7) (Luciferase)|
          Length = 548

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
 Frame = +1

Query: 142 FNVPMAIFQEAMTLDPSYTSMWLTMEKNNVDSKSVRLLPIFHFAEIN-----GSNPNRRF 306
           FN+P    ++   L  + +++ +T E ++    S +++P+F    I+        PNRR 
Sbjct: 333 FNLPGV--RQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRG 390

Query: 307 DIYNAGDLLHRGFSPSLLQANSLYDSGQFLYNGDAFY--------------TLNKTRGSD 444
           ++   G +L +G+  +      L D   +L+ GD  Y              +L K +G  
Sbjct: 391 EVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQ 450

Query: 445 LPP 453
           +PP
Sbjct: 451 VPP 453

>POLR_ASGVP (P36309) Genome polyprotein (241 kDa polyprotein) (ORF1|
           polyprotein) [Contains: Putative RNA-directed RNA
           polymerase/Helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat
           protein]
          Length = 2105

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 358 LQANSLYDSGQFLYNGDAFYTLNKTRGSDLPPLINAFEI 474
           L A+SL+D G+F++N D    L K+       L+N F++
Sbjct: 717 LNADSLFDLGRFVHNRDRAVKLAKSMARGTTGLLNEFDL 755

>SAPS1_MOUSE (Q7TSI3) SAPS domain family member 1|
          Length = 856

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 441 RPAPAHQRVRDILAHSDGKLHRCLRGW*DR--SSMYILQLPNPRLGRLLQRLLSPPERDP 614
           RP      + +  +  DG+L    +G  D   SSM  L    PRL R  Q LL PP+ +P
Sbjct: 280 RPRSDSVTMNNFFSSVDGQLELLAQGALDDALSSMGALHALRPRLDRFHQLLLEPPKLEP 339

>LUCI_LUCLA (Q01158) Luciferin 4-monooxygenase (EC 1.13.12.7) (Luciferase)|
          Length = 548

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
 Frame = +1

Query: 142 FNVPMAIFQEAMTLDPSYTSMWLTMEKNNVDSKSVRLLPIFHFAEINGSN-----PNRRF 306
           FN+P    ++   L  + +++ +T E ++    S +++P+F    I+        PNRR 
Sbjct: 333 FNLPGV--RQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKTLGPNRRG 390

Query: 307 DIYNAGDLLHRGFSPSLLQANSLYDSGQFLYNGDAFY--------------TLNKTRGSD 444
           ++   G +L +G+  +      + D   +L+ GD  Y              +L K +G  
Sbjct: 391 EVCVKGPMLMKGYVDNPEATREIIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQ 450

Query: 445 LPP 453
           +PP
Sbjct: 451 VPP 453

>COBT_MYCTU (P63841) Nicotinate-nucleotide--dimethylbenzimidazole|
           phosphoribosyltransferase (EC 2.4.2.21) (NN:DBI PRT)
           (N(1)-alpha-phosphoribosyltransferase)
          Length = 361

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 575 LTAAPXFAPRTRPGLFRWWSCGER 646
           +TAA   A R  PG  RWW  G R
Sbjct: 264 VTAAALVAERLAPGAHRWWQAGHR 287

>COBT_MYCBO (P63842) Nicotinate-nucleotide--dimethylbenzimidazole|
           phosphoribosyltransferase (EC 2.4.2.21) (NN:DBI PRT)
           (N(1)-alpha-phosphoribosyltransferase)
          Length = 361

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 575 LTAAPXFAPRTRPGLFRWWSCGER 646
           +TAA   A R  PG  RWW  G R
Sbjct: 264 VTAAALVAERLAPGAHRWWQAGHR 287

>SOK1_YEAST (P40317) Protein SOK1|
          Length = 901

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 494 KTSPLPPRMVRSIIDVHTPAP*PSTR--PLTAAPXFAPRTRP 613
           K   +PP+ + + I+  +P+P PS++  P  +AP   P T P
Sbjct: 174 KVDSIPPKNIYTNINNPSPSPPPSSKQPPSASAPQLPPATEP 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,544,874
Number of Sequences: 219361
Number of extensions: 2465273
Number of successful extensions: 7349
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7315
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)