ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26c05 |
|---|---|
| Clone Library Name | barley_pub |
>GLRX5_SCHPO (O74790) Monothiol glutaredoxin-5| Length = 244 Score = 38.9 bits (89), Expect = 0.011 Identities = 15/32 (46%), Positives = 24/32 (75%) Frame = -2 Query: 190 MLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 +L ++++ QGL+++S P FP+ YI GEF GG Sbjct: 194 ILADDSVRQGLKVFSDWPTFPQLYIKGEFVGG 225
>TXNL2_HUMAN (O76003) Thioredoxin-like protein 2 (PKC-interacting cousin of| thioredoxin) (PKC-theta-interacting protein) (PKCq-interacting protein) Length = 335 Score = 37.4 bits (85), Expect = 0.032 Identities = 16/39 (41%), Positives = 24/39 (61%) Frame = -2 Query: 211 IMSSLDEMLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 I S ++ +E + QGL+ YSS P +P+ Y+ GE GG Sbjct: 174 IQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGG 212 Score = 36.6 bits (83), Expect = 0.055 Identities = 14/33 (42%), Positives = 23/33 (69%) Frame = -2 Query: 193 EMLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 ++L +E + QGL+ YS+ P +P+ Y+ GE GG Sbjct: 282 DILEDEEVRQGLKAYSNWPTYPQLYVKGELVGG 314
>GLRX3_YEAST (Q03835) Monothiol glutaredoxin-3| Length = 285 Score = 37.4 bits (85), Expect = 0.032 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = -2 Query: 214 QIMSSLDEMLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 Q+ ++L +E++ Q L+ +S P FP+ YI+GEF GG Sbjct: 225 QVRFGFFDILRDESVRQNLKKFSEWPTFPQLYINGEFQGG 264
>GLRX4_YEAST (P32642) Monothiol glutaredoxin-4| Length = 244 Score = 36.6 bits (83), Expect = 0.055 Identities = 17/40 (42%), Positives = 25/40 (62%) Frame = -2 Query: 214 QIMSSLDEMLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 QI ++L +E + Q L+ +S P FP+ YI+GEF GG Sbjct: 185 QIRFGFFDILRDENVRQSLKKFSDWPTFPQLYINGEFQGG 224
>TXNL2_RAT (Q9JLZ1) Thioredoxin-like 2 protein (PKC-interacting cousin of| thioredoxin) (PKCq-interacting protein) (PKC-theta-interacting protein) Length = 337 Score = 36.2 bits (82), Expect = 0.071 Identities = 15/39 (38%), Positives = 24/39 (61%) Frame = -2 Query: 211 IMSSLDEMLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 I S ++ +E + QGL+ YS+ P +P+ Y+ GE GG Sbjct: 176 IQFSSFDIFSDEEVRQGLKTYSNWPTYPQLYVSGELIGG 214
>TXNL2_MOUSE (Q9CQM9) Thioredoxin-like protein 2 (PKC-interacting cousin of| thioredoxin) (PKC-theta-interacting protein) (PKCq-interacting protein) Length = 337 Score = 36.2 bits (82), Expect = 0.071 Identities = 15/39 (38%), Positives = 24/39 (61%) Frame = -2 Query: 211 IMSSLDEMLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 I S ++ +E + QGL+ YS+ P +P+ Y+ GE GG Sbjct: 176 IQFSSFDIFSDEEVRQGLKTYSNWPTYPQLYVSGELIGG 214
>GLRX4_SCHPO (Q9HDW8) Monothiol glutaredoxin-4| Length = 146 Score = 35.8 bits (81), Expect = 0.093 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -2 Query: 190 MLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 +L N+ L +G++ +S P P+ YI+GEF GG Sbjct: 76 VLSNDELREGIKEFSDWPTIPQLYINGEFVGG 107
>Y1846_SYNY3 (P73056) Hypothetical UPF0055 protein slr1846| Length = 107 Score = 35.8 bits (81), Expect = 0.093 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = -2 Query: 193 EMLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 ++L + + QG++ YS+ P P+ Y++GEF GG Sbjct: 52 DVLADAEIRQGIKEYSNWPTIPQVYVNGEFVGG 84
>ATL3K_ARATH (Q9M313) RING-H2 finger protein ATL3K| Length = 212 Score = 34.3 bits (77), Expect = 0.27 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = -1 Query: 371 CLTEYGEQDALCIIFSECCTLHSSLRHYFHVVCTDVLLKQRSQC 240 CL EY E++ L ++ EC +HYFHV C D LK C Sbjct: 139 CLCEYMEEEMLRMM-PEC-------KHYFHVYCLDAWLKLNGSC 174
>GLRX5_MOUSE (Q80Y14) Glutaredoxin-related protein 5| Length = 152 Score = 33.9 bits (76), Expect = 0.35 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -2 Query: 190 MLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 +L + L QG++ YS+ P P+ Y++GEF GG Sbjct: 86 VLDDPELRQGIKDYSNWPTIPQVYLNGEFVGG 117
>GLRX5_HUMAN (Q86SX6) Glutaredoxin-related protein 5| Length = 157 Score = 33.9 bits (76), Expect = 0.35 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -2 Query: 190 MLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 +L + L QG++ YS+ P P+ Y++GEF GG Sbjct: 90 VLDDPELRQGIKDYSNWPTIPQVYLNGEFVGG 121
>GLRXA_LEGPH (Q48833) Probable monothiol glutaredoxin grlA| Length = 89 Score = 32.7 bits (73), Expect = 0.79 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 193 EMLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 ++L N + Q L +S P FP+ Y+ GE GG Sbjct: 34 DILANPDIRQVLPQFSDWPTFPQLYVKGELIGG 66
>TPT_SOLTU (P29463) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) (E29) Length = 414 Score = 32.7 bits (73), Expect = 0.79 Identities = 24/73 (32%), Positives = 34/73 (46%) Frame = -3 Query: 456 RLIAGVSFCH*APHVTF*VNCIHLSSYRVSHGVRRARRALHYFFGMLYSAFFLTALLPCG 277 +L+ V+FCH HVT + + ++ RVS +AL FF S F L +P Sbjct: 175 KLLTPVAFCHALGHVT---SNVSFAAVRVS--FTHTVKALEPFFNAAASQFILGQQIPLA 229 Query: 276 LYRRFAEAALTVS 238 L+ A L VS Sbjct: 230 LWLSLAPVVLGVS 242
>ATL2M_ARATH (O82353) RING-H2 finger protein ATL2M| Length = 214 Score = 32.3 bits (72), Expect = 1.0 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = -1 Query: 371 CLTEYGEQDALCIIFSECCTLHSSLRHYFHVVCTDVLLKQRSQC 240 CL EY E + L ++ EC +HYFH+ C D LK C Sbjct: 141 CLCEYKEAEMLRMM-PEC-------KHYFHLCCLDAWLKLNGSC 176
>ATL4H_ARATH (P0C041) Putative RING-H2 finger protein ATL4H| Length = 336 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = -1 Query: 371 CLTEYGEQDALCIIFSECCTLHSSLRHYFHVVCTDVLLKQRSQC 240 CL E+ E ++L ++ H FHVVC D LK S C Sbjct: 184 CLGEFNEDESLRLL--------PKCNHTFHVVCIDRWLKSHSNC 219
>GLRXA_RICCN (Q92GH5) Probable monothiol glutaredoxin grlA| Length = 107 Score = 31.6 bits (70), Expect = 1.8 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -2 Query: 190 MLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 +L + L + L+ +S P FP+ YI+GE GG Sbjct: 54 VLFDAELREDLKKFSDWPTFPQLYINGELVGG 85
>ATL1A_ARATH (P93823) RING-H2 finger protein ATL1A| Length = 381 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -1 Query: 371 CLTEYGEQDALCIIFSECCTLHSSLRHYFHVVCTDVLLKQRSQC 240 CL E+ E + L II CC H FH+ C D+ L+ + C Sbjct: 137 CLNEFQEDEKLRII-PNCC-------HVFHIDCIDIWLQGNANC 172
>Y187_BUCAI (P57284) Hypothetical monothiol glutaredoxin BU187| Length = 108 Score = 31.2 bits (69), Expect = 2.3 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -2 Query: 190 MLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 +L N + L Y++ P FP+ +IDGE GG Sbjct: 51 ILENPDIRSELPKYANWPTFPQLWIDGELIGG 82
>ZC11A_MOUSE (Q6NZF1) Zinc finger CCCH-type domain-containing protein 11A| Length = 792 Score = 31.2 bits (69), Expect = 2.3 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Frame = +1 Query: 232 PIRHCERCFSKTSVQTTWK--*CRKEECRVQHSEKIMQSASCSPYSVRHPV 378 P RHCE +V T W+ C ++ CR +H E + + Y PV Sbjct: 23 PFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEIDKKRSEIPCYWENQPV 73
>YDHD_SHIFL (P0AC72) Probable monothiol glutaredoxin ydhD| Length = 115 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -2 Query: 193 EMLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 ++L N + L Y++ P FP+ ++DGE GG Sbjct: 51 DILQNPDIRAELPKYANWPTFPQLWVDGELVGG 83
>YDHD_ECOLI (P0AC69) Probable monothiol glutaredoxin ydhD| Length = 115 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -2 Query: 193 EMLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 ++L N + L Y++ P FP+ ++DGE GG Sbjct: 51 DILQNPDIRAELPKYANWPTFPQLWVDGELVGG 83
>YDHD_ECOL6 (P0AC70) Probable monothiol glutaredoxin ydhD| Length = 115 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -2 Query: 193 EMLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 ++L N + L Y++ P FP+ ++DGE GG Sbjct: 51 DILQNPDIRAELPKYANWPTFPQLWVDGELVGG 83
>YDHD_ECO57 (P0AC71) Probable monothiol glutaredoxin ydhD| Length = 115 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -2 Query: 193 EMLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 ++L N + L Y++ P FP+ ++DGE GG Sbjct: 51 DILQNPDIRAELPKYANWPTFPQLWVDGELVGG 83
>ZC11A_CHICK (Q5ZJJ1) Zinc finger CCCH-type domain-containing protein 11A| Length = 723 Score = 30.8 bits (68), Expect = 3.0 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%) Frame = +1 Query: 232 PIRHCERCFSKTSVQTTWK--*CRKEECRVQHSE 327 P RHCE ++ T WK C + CR +H E Sbjct: 23 PFRHCEAALGNETICTLWKEGRCFRNVCRFRHME 56
>ATL3A_ARATH (Q9SRQ8) RING-H2 finger protein ATL3A| Length = 356 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = -1 Query: 371 CLTEYGEQDALCIIFSECCTLHSSLRHYFHVVCTDVLLKQRSQC 240 CL+E+ E ++L ++ H FHV C D LK S C Sbjct: 162 CLSEFQENESLRLL--------PKCNHAFHVPCIDTWLKSHSNC 197
>HIPK2_MESAU (Q9WUM7) Homeodomain-interacting protein kinase 2 (EC 2.7.11.1)| (Mx-interacting protein kinase) (PKM) Length = 1168 Score = 30.8 bits (68), Expect = 3.0 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 6/48 (12%) Frame = +2 Query: 458 GYHSVTCRTIKFIPPSM--SSSVTTIFPWSSPKLILEQYI----STGY 583 G HS C K IPPS S++V+T P +P L EQ I STG+ Sbjct: 45 GSHSKLCSQSKNIPPSQPASTTVSTSLPIPNPSLPYEQTIIFPGSTGH 92
>GLRXA_RICPR (O05957) Probable monothiol glutaredoxin grlA| Length = 107 Score = 30.8 bits (68), Expect = 3.0 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -2 Query: 190 MLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 +L + AL + L+ +S P FP+ YI+G GG Sbjct: 54 VLFDTALREDLKKFSDWPTFPQLYINGVLVGG 85
>ZC11A_HUMAN (O75152) Zinc finger CCCH-type domain-containing protein 11A| Length = 810 Score = 30.4 bits (67), Expect = 3.9 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +1 Query: 232 PIRHCERCFSKTSVQTTWK--*CRKEECRVQHSE 327 P RHCE +V T W+ C ++ CR +H E Sbjct: 23 PFRHCEAAIGNETVCTLWQEGRCFRQVCRFRHME 56
>ZC11A_PONPY (Q5REG6) Zinc finger CCCH-type domain-containing protein 11A| Length = 811 Score = 30.4 bits (67), Expect = 3.9 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +1 Query: 232 PIRHCERCFSKTSVQTTWK--*CRKEECRVQHSE 327 P RHCE +V T W+ C ++ CR +H E Sbjct: 24 PFRHCEAALGNETVCTLWQEGRCFRQVCRFRHME 57
>ATL4L_ARATH (Q9ZT49) RING-H2 finger protein ATL4L (RING-H2 zinc finger protein| RHA3b) Length = 200 Score = 30.0 bits (66), Expect = 5.1 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -1 Query: 371 CLTEYGEQDALCIIFSECCTLHSSLRHYFHVVCTDVLLKQRSQC 240 C+TE+ E + + I+ C+ H FHV C D L RS C Sbjct: 116 CITEFSEGEEIRIL--PLCS------HAFHVACIDKWLTSRSSC 151
>AT11A_HUMAN (P98196) Probable phospholipid-transporting ATPase IH (EC 3.6.3.1)| (ATPase class I type 11A) (ATPase IS) Length = 1134 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/59 (33%), Positives = 24/59 (40%) Frame = -2 Query: 484 CSTSH*MVPKTNCRGQLLSLSTTCYILSELHSSIKLQGVSRSTESKTRSALFFRNVVLC 308 C H VP C GQ+L S S I + S S + R LFFR + LC Sbjct: 430 CIEGHVYVPHVICNGQVLPES----------SGIDMIDSSPSVNGREREELFFRALCLC 478
>TPT_FLATR (P49132) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) Length = 407 Score = 30.0 bits (66), Expect = 5.1 Identities = 22/73 (30%), Positives = 31/73 (42%) Frame = -3 Query: 456 RLIAGVSFCH*APHVTF*VNCIHLSSYRVSHGVRRARRALHYFFGMLYSAFFLTALLPCG 277 +L+ V FCH HVT ++S V+ +AL FF S F L +P Sbjct: 168 KLLIPVGFCHALGHVT-----SNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGQSIPIS 222 Query: 276 LYRRFAEAALTVS 238 L+ A + VS Sbjct: 223 LWLSLAPVVIGVS 235
>ATL2G_ARATH (O64763) RING-H2 finger protein ATL2G precursor (RING-H2 finger| protein ATL9) Length = 378 Score = 30.0 bits (66), Expect = 5.1 Identities = 16/44 (36%), Positives = 19/44 (43%) Frame = -1 Query: 371 CLTEYGEQDALCIIFSECCTLHSSLRHYFHVVCTDVLLKQRSQC 240 CL E+ E D + CC H FH C DV L + S C Sbjct: 138 CLCEF-EDDETLRLMPPCC-------HVFHADCVDVWLSEHSTC 173
>ATL5G_ARATH (Q9LF64) Probable RING-H2 finger protein ATL5G| Length = 362 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -1 Query: 371 CLTEYGEQDALCIIFSECCTLHSSLRHYFHVVCTDVLLKQRSQC 240 CL+E+ E ++L ++ H FH+ C D LK S C Sbjct: 145 CLSEFEENESLRLL--------PKCNHAFHLPCIDTWLKSHSNC 180
>ATL5K_ARATH (Q9LSW9) RING-H2 finger protein ATL5K (RING-H2 finger protein| ATL16) Length = 375 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = -1 Query: 371 CLTEYGEQDALCIIFSECCTLHSSLRHYFHVVCTDVLLKQRSQC 240 CL+E+ +++ L II + H FH+ C DV L+ + C Sbjct: 141 CLSEFQDEEKLRII--------PNCSHLFHIDCIDVWLQNNANC 176
>ACH3_CAEEL (P54244) Acetylcholine receptor, alpha-type subunit deg-3 precursor| Length = 564 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +2 Query: 437 LTPAISLGYHSVTCR-TIKFIPPSMSSSVTTIFPWSSPKLILEQYIST 577 L PAI +++TCR I+F P + TI W++ K L+ Y T Sbjct: 176 LYPAI----YTITCRLNIRFFPYDRQNCTLTISSWTNSKSALDYYADT 219
>ATL1F_ARATH (Q9LQM2) Putative RING-H2 finger protein ATL1F precursor| Length = 332 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = -1 Query: 383 QVTGCLTEYGEQDALCIIFSECCTLHSSLRHYFHVVCTDVLLKQRSQC 240 Q + CLTE+ + D + +I S+ H FH +C D+ + C Sbjct: 153 QCSICLTEFMDDDTIRLI--------STCNHSFHTICIDLWFEGHKTC 192
>ATL2J_ARATH (O80927) RING-H2 finger protein ATL2J| Length = 235 Score = 29.3 bits (64), Expect = 8.7 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Frame = -1 Query: 362 EYGEQDALCI-IFSECCTLH--SSLRHYFHVVCTDVLLKQRSQCLI 234 E G + ++C+ +F++ L S +H FHV+C + LK C I Sbjct: 137 EIGNECSVCLMVFTDSDELRQLSECKHAFHVLCIETWLKDHPNCPI 182
>YZ73_CAEEL (Q19297) Hypothetical protein F10D7.3 in chromosome X| Length = 146 Score = 29.3 bits (64), Expect = 8.7 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -2 Query: 199 LDEMLVNEALHQGLEMYSSRPIFPKFYIDGEFFGG 95 LD E + + L+ YS R P+ +I G+F GG Sbjct: 77 LDRSNQTEEMQEILKKYSGRTTVPQLFISGKFVGG 111 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,800,049 Number of Sequences: 219361 Number of extensions: 1687201 Number of successful extensions: 4698 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 4565 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4698 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
