Clone Name | rbasd26c05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470418.1| Oryza sativa (japonica cultivar-group), mRNA Length = 507 Score = 63.9 bits (32), Expect = 5e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 102 aagaactcaccgtcaatgtagaactttggaaagatgggcctgctggaatacatctcgagc 161 |||||||| ||||| ||||||| || || ||| |||||| |||||| ||| || |||| Sbjct: 428 aagaactcgccgtcgatgtagagctgcgggaaggtgggccagctggagtactccttgagc 369 Query: 162 ccctggtggagcgcctcgttgacgagca 189 |||||| |||||||||||||| |||||| Sbjct: 368 ccctggcggagcgcctcgttggcgagca 341
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 63.9 bits (32), Expect = 5e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 102 aagaactcaccgtcaatgtagaactttggaaagatgggcctgctggaatacatctcgagc 161 |||||||| ||||| ||||||| || || ||| |||||| |||||| ||| || |||| Sbjct: 35526974 aagaactcgccgtcgatgtagagctgcgggaaggtgggccagctggagtactccttgagc 35526915 Query: 162 ccctggtggagcgcctcgttgacgagca 189 |||||| |||||||||||||| |||||| Sbjct: 35526914 ccctggcggagcgcctcgttggcgagca 35526887
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 63.9 bits (32), Expect = 5e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 102 aagaactcaccgtcaatgtagaactttggaaagatgggcctgctggaatacatctcgagc 161 |||||||| ||||| ||||||| || || ||| |||||| |||||| ||| || |||| Sbjct: 35617046 aagaactcgccgtcgatgtagagctgcgggaaggtgggccagctggagtactccttgagc 35616987 Query: 162 ccctggtggagcgcctcgttgacgagca 189 |||||| |||||||||||||| |||||| Sbjct: 35616986 ccctggcggagcgcctcgttggcgagca 35616959
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 63.9 bits (32), Expect = 5e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 102 aagaactcaccgtcaatgtagaactttggaaagatgggcctgctggaatacatctcgagc 161 |||||||| ||||| ||||||| || || ||| |||||| |||||| ||| || |||| Sbjct: 59937 aagaactcgccgtcgatgtagagctgcgggaaggtgggccagctggagtactccttgagc 59878 Query: 162 ccctggtggagcgcctcgttgacgagca 189 |||||| |||||||||||||| |||||| Sbjct: 59877 ccctggcggagcgcctcgttggcgagca 59850
>dbj|AK059425.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-E07, full insert sequence Length = 864 Score = 63.9 bits (32), Expect = 5e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 102 aagaactcaccgtcaatgtagaactttggaaagatgggcctgctggaatacatctcgagc 161 |||||||| ||||| ||||||| || || ||| |||||| |||||| ||| || |||| Sbjct: 498 aagaactcgccgtcgatgtagagctgcgggaaggtgggccagctggagtactccttgagc 439 Query: 162 ccctggtggagcgcctcgttgacgagca 189 |||||| |||||||||||||| |||||| Sbjct: 438 ccctggcggagcgcctcgttggcgagca 411
>gb|AY105116.1| Zea mays PCO136039 mRNA sequence Length = 779 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Minus Query: 95 tccaccaaagaactcaccgtcaatgtagaactttggaaagatgggcctgctggaatacat 154 |||||| |||||||| ||||| ||||||| || || ||| |||||| |||||| ||| Sbjct: 498 tccaccgaagaactcgccgtcgatgtagagctgcgggaaggtgggccagctggagtactc 439 Query: 155 ctcgagcccctggtggagcgcctcgttgacgagca 189 || ||||||||| |||||||||||||| |||||| Sbjct: 438 cttgagcccctgccggagcgcctcgttggcgagca 404
>emb|AL160154.11| Human DNA sequence from clone RP11-447N10 on chromosome 13 Contains a CpG island, complete sequence Length = 157379 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 374 ctgtaacttgatagatgaatgcagttca 401 ||||||||||||||||||||||| |||| Sbjct: 40593 ctgtaacttgatagatgaatgcacttca 40566
>emb|AL136116.11| Human DNA sequence from clone RP1-95L4 on chromosome 6 Contains the 3' end of the gene for androgen induced protein (AIG-1) (CGI-103) (includes FLJ10485), a pseudogene similar to actin genes, a ribosomal protein L31 (RPL31) pseudogene and a pseudogene similar to hypothetical proteins PRO2207 and similar to presenilins associated rhomboid-like protein, complete sequence Length = 100815 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 490 atttattcctccttccatgtcatcctca 517 |||| ||||||||||||||||||||||| Sbjct: 60195 attttttcctccttccatgtcatcctca 60168
>ref|XM_955965.1| Neurospora crassa OR74A hypothetical protein (NCU01151.1) partial mRNA Length = 3639 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 110 accgtcaatgtagaactttgga 131 |||||||||||||||||||||| Sbjct: 558 accgtcaatgtagaactttgga 537
>ref|XM_326643.1| Neurospora crassa OR74A hypothetical protein (NCU01151.1) partial mRNA Length = 3639 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 110 accgtcaatgtagaactttgga 131 |||||||||||||||||||||| Sbjct: 558 accgtcaatgtagaactttgga 537
>emb|AL670009.1|NC123A4 Neurospora crassa DNA linkage group V cosmid contig 123A4 Length = 153794 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 110 accgtcaatgtagaactttgga 131 |||||||||||||||||||||| Sbjct: 109784 accgtcaatgtagaactttgga 109805
>emb|Z75550.1|CET22C1 Caenorhabditis elegans Cosmid T22C1, complete sequence Length = 39511 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 478 tcgaacaatcaaatttattcct 499 |||||||||||||||||||||| Sbjct: 25139 tcgaacaatcaaatttattcct 25160
>gb|AY458643.1| Uncultured bacterium 561 clone EBAC000-47H08 genomic sequence Length = 63692 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 106 actcaccgtcaatgtagaact 126 ||||||||||||||||||||| Sbjct: 35944 actcaccgtcaatgtagaact 35964
>emb|BX571710.12| Zebrafish DNA sequence from clone DKEY-4A14 in linkage group 1, complete sequence Length = 145840 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 tgcagttcacttagaatgtaacatg 417 |||||| |||||||||||||||||| Sbjct: 130988 tgcagtccacttagaatgtaacatg 131012
>gb|AC010864.11| Homo sapiens chromosome 10 clone RP11-351D16, complete sequence Length = 205794 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 498 ctccttccatgtcatcctcag 518 ||||||||||||||||||||| Sbjct: 24290 ctccttccatgtcatcctcag 24310
>emb|AL935037.9| Zebrafish DNA sequence from clone CH211-188E8 in linkage group 1, complete sequence Length = 141034 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 393 tgcagttcacttagaatgtaacatg 417 |||||| |||||||||||||||||| Sbjct: 76090 tgcagtccacttagaatgtaacatg 76066
>emb|BX088571.5| Zebrafish DNA sequence from clone CH211-208H7 in linkage group 1, complete sequence Length = 214441 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 tgcagttcacttagaatgtaacatg 417 |||||| |||||||||||||||||| Sbjct: 72269 tgcagtccacttagaatgtaacatg 72293
>gb|AC169501.2| Mus musculus BAC clone RP24-445O18 from chromosome 17, complete sequence Length = 202078 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 aacaatcaaatttattcctc 500 |||||||||||||||||||| Sbjct: 35536 aacaatcaaatttattcctc 35517
>ref|XM_469817.1| Oryza sativa (japonica cultivar-group), mRNA Length = 930 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 tcttgagcaatacatcagca 575 |||||||||||||||||||| Sbjct: 508 tcttgagcaatacatcagca 489
>gb|AC131712.3| Mus musculus BAC clone RP23-193A5 from 17, complete sequence Length = 218758 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 aacaatcaaatttattcctc 500 |||||||||||||||||||| Sbjct: 48215 aacaatcaaatttattcctc 48234
>emb|X99127.1|SEABCTS S.epidermidis gene encoding ABC transport system Length = 2595 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 cacgttgcaattgtccacca 101 |||||||||||||||||||| Sbjct: 467 cacgttgcaattgtccacca 448
>gb|AC092953.7| Homo sapiens 3 BAC RP11-531F16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 112501 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gatgacatgatctgcccagt 220 |||||||||||||||||||| Sbjct: 35296 gatgacatgatctgcccagt 35277
>gb|AC027807.6| Homo sapiens chromosome 15, clone RP11-342A23, complete sequence Length = 181327 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 ttccatgtcatcctcagtga 521 |||||||||||||||||||| Sbjct: 16966 ttccatgtcatcctcagtga 16947
>gb|AF285442.2| Homo sapiens chromosome 8 clone XX-72A2 map 8p23, complete sequence Length = 86113 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 540 gcagcccaaaactgattctt 559 |||||||||||||||||||| Sbjct: 54031 gcagcccaaaactgattctt 54012
>gb|AC078874.13| Homo sapiens 12 BAC RP11-781C15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166450 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 gaaagatgggcctgctggaa 149 |||||||||||||||||||| Sbjct: 44199 gaaagatgggcctgctggaa 44180
>gb|AC104387.5| Homo sapiens chromosome 11, clone CTD-2566K14, complete sequence Length = 159765 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 aatttattcctccttccatg 508 |||||||||||||||||||| Sbjct: 108363 aatttattcctccttccatg 108382
>gb|AC025857.5| Homo sapiens chromosome 8, clone RP11-589N15, complete sequence Length = 175749 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 540 gcagcccaaaactgattctt 559 |||||||||||||||||||| Sbjct: 126990 gcagcccaaaactgattctt 126971
>gb|AC145875.3| Pan troglodytes BAC clone RP43-6O8 from chromosome 7, complete sequence Length = 179919 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 540 gcagcccaaaactgattctt 559 |||||||||||||||||||| Sbjct: 14500 gcagcccaaaactgattctt 14481
>gb|AC016257.22|AC016257 Homo sapiens 12 BAC RP11-61E11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161096 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 gaaagatgggcctgctggaa 149 |||||||||||||||||||| Sbjct: 16845 gaaagatgggcctgctggaa 16826
>gb|AC103965.5| Homo sapiens chromosome 15, clone CTD-2071L7, complete sequence Length = 94879 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 ttccatgtcatcctcagtga 521 |||||||||||||||||||| Sbjct: 93947 ttccatgtcatcctcagtga 93928
>gb|AF270189.1|AF270189 Staphylococcus epidermidis strain SR1 clone step.1052g09 genomic sequence Length = 3218 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 cacgttgcaattgtccacca 101 |||||||||||||||||||| Sbjct: 1713 cacgttgcaattgtccacca 1694
>gb|AF270180.1|AF270180 Staphylococcus epidermidis strain SR1 clone step.1052d09 genomic sequence Length = 3997 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cacgttgcaattgtccacca 101 |||||||||||||||||||| Sbjct: 1030 cacgttgcaattgtccacca 1049
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 tggagcgcctcgttgacgag 187 |||||||||||||||||||| Sbjct: 6883196 tggagcgcctcgttgacgag 6883177
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome Length = 2616530 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cacgttgcaattgtccacca 101 |||||||||||||||||||| Sbjct: 295113 cacgttgcaattgtccacca 295132
>dbj|AK099399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000O17, full insert sequence Length = 1344 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 tcttgagcaatacatcagca 575 |||||||||||||||||||| Sbjct: 641 tcttgagcaatacatcagca 622
>emb|CR761125.2| Xenopus tropicalis finished cDNA, clone TEgg121e06 Length = 2396 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 acaaatctctcacaaaacaa 57 |||||||||||||||||||| Sbjct: 2187 acaaatctctcacaaaacaa 2168
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome Length = 2499279 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cacgttgcaattgtccacca 101 |||||||||||||||||||| Sbjct: 401995 cacgttgcaattgtccacca 402014
>emb|CR938722.3| Pig DNA sequence from clone CH242-150C11 on chromosome 4, complete sequence Length = 177720 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 ctccttccatgtcatcctca 517 |||||||||||||||||||| Sbjct: 111562 ctccttccatgtcatcctca 111581
>emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chromosome 4, complete sequence Length = 208153 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 tccttccatgtcatcctcag 518 |||||||||||||||||||| Sbjct: 126965 tccttccatgtcatcctcag 126984 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,175,256 Number of Sequences: 3902068 Number of extensions: 5175256 Number of successful extensions: 93110 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92988 Number of HSP's gapped (non-prelim): 122 length of query: 584 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 561 effective length of database: 17,143,297,704 effective search space: 9617390011944 effective search space used: 9617390011944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)