ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY090542.1| Deschampsia antarctica clone Dacor 1.7 alanine am... 84 2e-13
2gb|AY236227.1| Oryza sativa (indica cultivar-group) alanine amin... 70 3e-09
3dbj|AK067732.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 3e-09
4dbj|AK060835.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 3e-09
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
6dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
7gb|AC126783.33| Medicago truncatula clone mth2-15k17, complete s... 40 2.5
8gb|AC009084.9| Homo sapiens chromosome 16 clone RP11-361L15, com... 40 2.5
9dbj|AP004918.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 2.5
10gb|AC125350.3| Mus musculus BAC clone RP23-423B11 from chromosom... 38 9.8
11gb|DQ118095.1| Vitis vinifera AlaT1 mRNA, complete cds 38 9.8
12gb|DQ118094.1| Vitis labrusca AlaT1 mRNA, complete cds 38 9.8
13gb|AC122346.4| Mus musculus BAC clone RP23-368L6 from 13, comple... 38 9.8

>gb|AY090542.1| Deschampsia antarctica clone Dacor 1.7 alanine aminotransferase
           mRNA, 3' UTR and partial cds
          Length = 583

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagcttgaggcagtagtaaacatcgggctctttgccagcgctttttgctacatccatag 60
           ||||| ||||||||||| ||||||||||  |||||||||||||||| |||  ||||||||
Sbjct: 268 gaagcatgaggcagtagaaaacatcgggtgctttgccagcgcttttggctgtatccatag 209

                     
Query: 61  ctctttgcgg 70
           ||||||||||
Sbjct: 208 ctctttgcgg 199



to top

>gb|AY236227.1| Oryza sativa (indica cultivar-group) alanine aminotransferase mRNA,
            complete cds
          Length = 1558

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaagcttgaggcagtagtaaacatcgggctctttgccagcgctttttgctacatccatag 60
            ||||||||||||||||| ||||||||| | |||||||||| ||||| ||| |||| ||||
Sbjct: 1321 gaagcttgaggcagtagaaaacatcggccgctttgccagcccttttggctgcatctatag 1262

                                                                     
Query: 61   ctctttgcggnangcntattnncngnaaggaatacatanctccttntgngaaattgc 117
            || || | || | || ||||    | || || |||||| |||||| || ||||||||
Sbjct: 1261 cttttggtggtaagcgtatttgggggaaagagtacatagctccttctgtgaaattgc 1205



to top

>dbj|AK067732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118J02, full
            insert sequence
          Length = 1970

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaagcttgaggcagtagtaaacatcgggctctttgccagcgctttttgctacatccatag 60
            ||||||||||||||||| ||||||||| | |||||||||| ||||| ||| |||| ||||
Sbjct: 1370 gaagcttgaggcagtagaaaacatcggccgctttgccagcccttttggctgcatctatag 1311

                                                                     
Query: 61   ctctttgcggnangcntattnncngnaaggaatacatanctccttntgngaaattgc 117
            || || | || | || ||||    | || || |||||| |||||| || ||||||||
Sbjct: 1310 cttttggtggtaagcgtatttgggggaaagagtacatagctccttctgtgaaattgc 1254



to top

>dbj|AK060835.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C09, full
            insert sequence
          Length = 1581

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaagcttgaggcagtagtaaacatcgggctctttgccagcgctttttgctacatccatag 60
            ||||||||||||||||| ||||||||| | |||||||||| ||||| ||| |||| ||||
Sbjct: 1139 gaagcttgaggcagtagaaaacatcggccgctttgccagcccttttggctgcatctatag 1080

                                                                     
Query: 61   ctctttgcggnangcntattnncngnaaggaatacatanctccttntgngaaattgc 117
            || || | || | || ||||    | || || |||||| |||||| || ||||||||
Sbjct: 1079 cttttggtggtaagcgtatttgggggaaagagtacatagctccttctgtgaaattgc 1023



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                          
Query: 1      gaagcttgaggcagtagtaaacatcgggctctttgccagcgctttttgctacatccatag 60
              ||||||||||||||||| ||||||||| | |||||||||| ||||| ||| |||| ||||
Sbjct: 446081 gaagcttgaggcagtagaaaacatcggccgctttgccagcccttttggctgcatctatag 446140

                
Query: 61     ct 62
              ||
Sbjct: 446141 ct 446142



to top

>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                         
Query: 1     gaagcttgaggcagtagtaaacatcgggctctttgccagcgctttttgctacatccatag 60
             ||||||||||||||||| ||||||||| | |||||||||| ||||| ||| |||| ||||
Sbjct: 48245 gaagcttgaggcagtagaaaacatcggccgctttgccagcccttttggctgcatctatag 48304

               
Query: 61    ct 62
             ||
Sbjct: 48305 ct 48306



to top

>gb|AC126783.33| Medicago truncatula clone mth2-15k17, complete sequence
          Length = 117437

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     aagcttgaggcagtagtaaacatc 25
             ||||||||| ||||||||||||||
Sbjct: 77626 aagcttgagacagtagtaaacatc 77649



to top

>gb|AC009084.9| Homo sapiens chromosome 16 clone RP11-361L15, complete sequence
          Length = 183864

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     tgctacatccatagctcttt 66
              ||||||||||||||||||||
Sbjct: 133185 tgctacatccatagctcttt 133166



to top

>dbj|AP004918.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT13I21, TM0076a,
             complete sequence
          Length = 71794

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     aagcttgaggcagtagtaaacatc 25
             ||||||||| ||||||||||||||
Sbjct: 32405 aagcttgagacagtagtaaacatc 32428



to top

>gb|AC125350.3| Mus musculus BAC clone RP23-423B11 from chromosome 13, complete
            sequence
          Length = 205567

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 2    aagcttgaggcagtagtaaacat 24
            |||||||||||||||||| ||||
Sbjct: 7535 aagcttgaggcagtagtatacat 7513



to top

>gb|DQ118095.1| Vitis vinifera AlaT1 mRNA, complete cds
          Length = 1455

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 3    agcttgaggcagtagtaaacatc 25
            ||||||||||||||| |||||||
Sbjct: 1259 agcttgaggcagtagaaaacatc 1237



to top

>gb|DQ118094.1| Vitis labrusca AlaT1 mRNA, complete cds
          Length = 1434

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 3    agcttgaggcagtagtaaacatc 25
            ||||||||||||||| |||||||
Sbjct: 1259 agcttgaggcagtagaaaacatc 1237



to top

>gb|AC122346.4| Mus musculus BAC clone RP23-368L6 from 13, complete sequence
          Length = 198130

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 2      aagcttgaggcagtagtaaacat 24
              |||||||||||||||||| ||||
Sbjct: 162709 aagcttgaggcagtagtatacat 162687


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 386,501
Number of Sequences: 3902068
Number of extensions: 386501
Number of successful extensions: 20627
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20609
Number of HSP's gapped (non-prelim): 18
length of query: 197
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 175
effective length of database: 17,147,199,772
effective search space: 3000759960100
effective search space used: 3000759960100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top