Clone Name | rbasd26c04 |
---|---|
Clone Library Name | barley_pub |
>gb|AY090542.1| Deschampsia antarctica clone Dacor 1.7 alanine aminotransferase mRNA, 3' UTR and partial cds Length = 583 Score = 83.8 bits (42), Expect = 2e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 1 gaagcttgaggcagtagtaaacatcgggctctttgccagcgctttttgctacatccatag 60 ||||| ||||||||||| |||||||||| |||||||||||||||| ||| |||||||| Sbjct: 268 gaagcatgaggcagtagaaaacatcgggtgctttgccagcgcttttggctgtatccatag 209 Query: 61 ctctttgcgg 70 |||||||||| Sbjct: 208 ctctttgcgg 199
>gb|AY236227.1| Oryza sativa (indica cultivar-group) alanine aminotransferase mRNA, complete cds Length = 1558 Score = 69.9 bits (35), Expect = 3e-09 Identities = 94/117 (80%) Strand = Plus / Minus Query: 1 gaagcttgaggcagtagtaaacatcgggctctttgccagcgctttttgctacatccatag 60 ||||||||||||||||| ||||||||| | |||||||||| ||||| ||| |||| |||| Sbjct: 1321 gaagcttgaggcagtagaaaacatcggccgctttgccagcccttttggctgcatctatag 1262 Query: 61 ctctttgcggnangcntattnncngnaaggaatacatanctccttntgngaaattgc 117 || || | || | || |||| | || || |||||| |||||| || |||||||| Sbjct: 1261 cttttggtggtaagcgtatttgggggaaagagtacatagctccttctgtgaaattgc 1205
>dbj|AK067732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118J02, full insert sequence Length = 1970 Score = 69.9 bits (35), Expect = 3e-09 Identities = 94/117 (80%) Strand = Plus / Minus Query: 1 gaagcttgaggcagtagtaaacatcgggctctttgccagcgctttttgctacatccatag 60 ||||||||||||||||| ||||||||| | |||||||||| ||||| ||| |||| |||| Sbjct: 1370 gaagcttgaggcagtagaaaacatcggccgctttgccagcccttttggctgcatctatag 1311 Query: 61 ctctttgcggnangcntattnncngnaaggaatacatanctccttntgngaaattgc 117 || || | || | || |||| | || || |||||| |||||| || |||||||| Sbjct: 1310 cttttggtggtaagcgtatttgggggaaagagtacatagctccttctgtgaaattgc 1254
>dbj|AK060835.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C09, full insert sequence Length = 1581 Score = 69.9 bits (35), Expect = 3e-09 Identities = 94/117 (80%) Strand = Plus / Minus Query: 1 gaagcttgaggcagtagtaaacatcgggctctttgccagcgctttttgctacatccatag 60 ||||||||||||||||| ||||||||| | |||||||||| ||||| ||| |||| |||| Sbjct: 1139 gaagcttgaggcagtagaaaacatcggccgctttgccagcccttttggctgcatctatag 1080 Query: 61 ctctttgcggnangcntattnncngnaaggaatacatanctccttntgngaaattgc 117 || || | || | || |||| | || || |||||| |||||| || |||||||| Sbjct: 1079 cttttggtggtaagcgtatttgggggaaagagtacatagctccttctgtgaaattgc 1023
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 67.9 bits (34), Expect = 1e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 1 gaagcttgaggcagtagtaaacatcgggctctttgccagcgctttttgctacatccatag 60 ||||||||||||||||| ||||||||| | |||||||||| ||||| ||| |||| |||| Sbjct: 446081 gaagcttgaggcagtagaaaacatcggccgctttgccagcccttttggctgcatctatag 446140 Query: 61 ct 62 || Sbjct: 446141 ct 446142
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 67.9 bits (34), Expect = 1e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 1 gaagcttgaggcagtagtaaacatcgggctctttgccagcgctttttgctacatccatag 60 ||||||||||||||||| ||||||||| | |||||||||| ||||| ||| |||| |||| Sbjct: 48245 gaagcttgaggcagtagaaaacatcggccgctttgccagcccttttggctgcatctatag 48304 Query: 61 ct 62 || Sbjct: 48305 ct 48306
>gb|AC126783.33| Medicago truncatula clone mth2-15k17, complete sequence Length = 117437 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 aagcttgaggcagtagtaaacatc 25 ||||||||| |||||||||||||| Sbjct: 77626 aagcttgagacagtagtaaacatc 77649
>gb|AC009084.9| Homo sapiens chromosome 16 clone RP11-361L15, complete sequence Length = 183864 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tgctacatccatagctcttt 66 |||||||||||||||||||| Sbjct: 133185 tgctacatccatagctcttt 133166
>dbj|AP004918.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT13I21, TM0076a, complete sequence Length = 71794 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 aagcttgaggcagtagtaaacatc 25 ||||||||| |||||||||||||| Sbjct: 32405 aagcttgagacagtagtaaacatc 32428
>gb|AC125350.3| Mus musculus BAC clone RP23-423B11 from chromosome 13, complete sequence Length = 205567 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 aagcttgaggcagtagtaaacat 24 |||||||||||||||||| |||| Sbjct: 7535 aagcttgaggcagtagtatacat 7513
>gb|DQ118095.1| Vitis vinifera AlaT1 mRNA, complete cds Length = 1455 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 3 agcttgaggcagtagtaaacatc 25 ||||||||||||||| ||||||| Sbjct: 1259 agcttgaggcagtagaaaacatc 1237
>gb|DQ118094.1| Vitis labrusca AlaT1 mRNA, complete cds Length = 1434 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 3 agcttgaggcagtagtaaacatc 25 ||||||||||||||| ||||||| Sbjct: 1259 agcttgaggcagtagaaaacatc 1237
>gb|AC122346.4| Mus musculus BAC clone RP23-368L6 from 13, complete sequence Length = 198130 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 aagcttgaggcagtagtaaacat 24 |||||||||||||||||| |||| Sbjct: 162709 aagcttgaggcagtagtatacat 162687 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 386,501 Number of Sequences: 3902068 Number of extensions: 386501 Number of successful extensions: 20627 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20609 Number of HSP's gapped (non-prelim): 18 length of query: 197 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 175 effective length of database: 17,147,199,772 effective search space: 3000759960100 effective search space used: 3000759960100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)