ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25m24 |
|---|---|
| Clone Library Name | barley_pub |
>RPOA_PSAJU (Q7H6F6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 392 bits (1007), Expect = e-109 Identities = 191/192 (99%), Positives = 191/192 (99%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_PSAFR (P92418) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 392 bits (1007), Expect = e-109 Identities = 191/192 (99%), Positives = 191/192 (99%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_HORMA (Q7H6J0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 392 bits (1007), Expect = e-109 Identities = 191/192 (99%), Positives = 191/192 (99%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_HORJU (Q7H6J1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 392 bits (1007), Expect = e-109 Identities = 191/192 (99%), Positives = 191/192 (99%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_HORBU (Q7H6J2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 392 bits (1007), Expect = e-109 Identities = 191/192 (99%), Positives = 191/192 (99%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_AUSVE (P93993) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 391 bits (1005), Expect = e-109 Identities = 190/192 (98%), Positives = 191/192 (99%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVXMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_PSEPI (Q7H6G1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 391 bits (1004), Expect = e-109 Identities = 190/192 (98%), Positives = 191/192 (99%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_FESSE (P93956) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 391 bits (1004), Expect = e-109 Identities = 190/192 (98%), Positives = 191/192 (99%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_ELYCA (Q7H6I5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 391 bits (1004), Expect = e-109 Identities = 190/192 (98%), Positives = 191/192 (99%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_AGRCR (P92209) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 391 bits (1004), Expect = e-109 Identities = 190/192 (98%), Positives = 191/192 (99%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_HORVU (P92392) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 390 bits (1003), Expect = e-108 Identities = 190/192 (98%), Positives = 190/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRID FRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDXFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_BROIN (P92220) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 390 bits (1003), Expect = e-108 Identities = 190/192 (98%), Positives = 191/192 (99%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTF+KRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFKKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_ELYCL (Q8MAI9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 390 bits (1002), Expect = e-108 Identities = 190/192 (98%), Positives = 190/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF MEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFHMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_FESFE (P93968) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 390 bits (1001), Expect = e-108 Identities = 189/192 (98%), Positives = 191/192 (99%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRN+NYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNLNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_EREDI (P93974) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 389 bits (1000), Expect = e-108 Identities = 189/192 (98%), Positives = 191/192 (99%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTF+KRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFKKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_WHEAT (P12073) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 389 bits (999), Expect = e-108 Identities = 189/192 (98%), Positives = 190/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEG SFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_TAECM (Q7GED0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 389 bits (999), Expect = e-108 Identities = 189/192 (98%), Positives = 190/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEG SFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_SECCE (Q6YLW2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 389 bits (999), Expect = e-108 Identities = 189/192 (98%), Positives = 190/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEG SFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_AEGUN (Q8MAJ0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 389 bits (999), Expect = e-108 Identities = 189/192 (98%), Positives = 190/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEG SFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_AEGSP (P92892) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 389 bits (999), Expect = e-108 Identities = 189/192 (98%), Positives = 190/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEG SFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_AEGCM (Q7GED9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 389 bits (999), Expect = e-108 Identities = 189/192 (98%), Positives = 190/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEG SFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_ELYHY (Q8MAI8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 389 bits (998), Expect = e-108 Identities = 189/192 (98%), Positives = 190/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDA MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAESMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_THIBE (P92439) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 388 bits (997), Expect = e-108 Identities = 189/192 (98%), Positives = 190/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPP FTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPPFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_PSAST (P93962) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 388 bits (996), Expect = e-108 Identities = 189/192 (98%), Positives = 189/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPI V MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIXXVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_PSARU (P93960) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 388 bits (996), Expect = e-108 Identities = 190/192 (98%), Positives = 190/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLN IFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNYIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_SECST (P93964) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 387 bits (995), Expect = e-107 Identities = 188/192 (97%), Positives = 189/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEG SFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RID FRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDXFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_AEGTA (P92429) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 387 bits (994), Expect = e-107 Identities = 189/192 (98%), Positives = 190/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLN IFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNSIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_LOPEL (Q8MAI6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 387 bits (993), Expect = e-107 Identities = 188/192 (97%), Positives = 190/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPP FTF+KRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPPFTFKKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_HETPI (P92389) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 385 bits (988), Expect = e-107 Identities = 188/192 (97%), Positives = 189/192 (98%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTEL KNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELIKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRT NCLKRANIHTLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTXNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_CRIDE (P92225) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 377 bits (969), Expect = e-104 Identities = 184/192 (95%), Positives = 185/192 (96%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 DLQIKRDRGYQTELRKNYQDGSYPIDAV MPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 DLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLHAEEEG SFEENKNRFTPPLFTFQKRLTNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHAEEEGASFEENKNRFTPPLFTFQKRLTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLELTSRTYNC KR TLLDLLSKTEEDL+RIDSFRMEDRKHIWDTLEKH Sbjct: 268 PLNCIFIDQLELTSRTYNCXKRXXXXTLLDLLSKTEEDLLRIDSFRMEDRKHIWDTLEKH 327 Query: 56 LPIDLLKNKLSF 21 LPIDLLKNKLSF Sbjct: 328 LPIDLLKNKLSF 339
>RPOA_SACOF (Q6ENT2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 362 bits (929), Expect = e-100 Identities = 177/191 (92%), Positives = 180/191 (94%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +LQIKRDRGY TELRKN QDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 ELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPF+H EEEGTSFEENKNR TPPL TFQKR TNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTPPLLTFQKRFTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLEL SRTYNCLKRANIHTLLDLLSKTEEDLMRI+SFRMED K IWDTLEKH Sbjct: 268 PLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRINSFRMEDGKLIWDTLEKH 327 Query: 56 LPIDLLKNKLS 24 LPIDL KNK S Sbjct: 328 LPIDLPKNKFS 338
>RPOA_SACHY (Q6L370) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 362 bits (929), Expect = e-100 Identities = 177/191 (92%), Positives = 180/191 (94%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +LQIKRDRGY TELRKN QDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 ELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPF+H EEEGTSFEENKNR TPPL TFQKR TNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFIHTEEEGTSFEENKNRLTPPLLTFQKRFTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLEL SRTYNCLKRANIHTLLDLLSKTEEDLMRI+SFRMED K IWDTLEKH Sbjct: 268 PLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRINSFRMEDGKLIWDTLEKH 327 Query: 56 LPIDLLKNKLS 24 LPIDL KNK S Sbjct: 328 LPIDLPKNKFS 338
>RPOA_MAIZE (P09562) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 359 bits (921), Expect = 4e-99 Identities = 176/191 (92%), Positives = 179/191 (93%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +LQIKRDR Y TELRKN QDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG Sbjct: 148 ELQIKRDRAYHTELRKNSQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLH EEEGTSFEENKNR TPPL TFQKR TNLKKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHTEEEGTSFEENKNRLTPPLLTFQKRFTNLKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLEL SRTYNCLKRANIHTLLDLLSKTEEDLM+I+SFRMED K IWDTLEKH Sbjct: 268 PLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMQINSFRMEDGKLIWDTLEKH 327 Query: 56 LPIDLLKNKLS 24 LPIDL KNK S Sbjct: 328 LPIDLPKNKFS 338
>RPOA_ORYSA (P12090) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 337 Score = 343 bits (881), Expect = 2e-94 Identities = 167/189 (88%), Positives = 176/189 (93%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +L+IKRDRGY TE+RKN QDGSYPIDAV MPVRNVNYSIF+CGNGN K+EILFLEIWTNG Sbjct: 148 ELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLH EEEGT F+ENKNRFT PL +FQKRLTNLKKNKK I Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLKKNKKRI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLEL SRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRM+D K IWDTLEKH Sbjct: 268 PLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTLEKH 327 Query: 56 LPIDLLKNK 30 LP+DL KNK Sbjct: 328 LPMDLPKNK 336
>RPOA_ORYNI (Q6ENE2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 337 Score = 343 bits (881), Expect = 2e-94 Identities = 167/189 (88%), Positives = 176/189 (93%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +L+IKRDRGY TE+RKN QDGSYPIDAV MPVRNVNYSIF+CGNGN K+EILFLEIWTNG Sbjct: 148 ELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFACGNGNAKYEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDLFLPFLH EEEGT F+ENKNRFT PL +FQKRLTNLKKNKK I Sbjct: 208 SLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNLKKNKKRI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PLNCIFIDQLEL SRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRM+D K IWDTLEKH Sbjct: 268 PLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQIWDTLEKH 327 Query: 56 LPIDLLKNK 30 LP+DL KNK Sbjct: 328 LPMDLPKNK 336
>RPOA_ACOCL (Q3V502) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 337 Score = 285 bits (729), Expect = 7e-77 Identities = 142/188 (75%), Positives = 158/188 (84%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 LQI+RDRGY+ + KN QDGSYPIDAV MPVRN N+SI S GNGN+K EILFLEIWTNGS Sbjct: 149 LQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHSYGNGNQKQEILFLEIWTNGS 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTPKEAL+EASRNLIDLF+PFLHAEEE +FEEN+NRFT P FTF RL NLKKNKK I Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFTVPPFTFPDRLANLKKNKKEIA 268 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHL 54 L CIFIDQ EL RTYNCLKR+NIHTLLDLLS ++EDLM+I+ FR+ED K I DTL+KH Sbjct: 269 LKCIFIDQSELPPRTYNCLKRSNIHTLLDLLSNSQEDLMKIEYFRIEDVKQILDTLQKHF 328 Query: 53 PIDLLKNK 30 IDL KNK Sbjct: 329 AIDLPKNK 336
>RPOA_ACOGR (Q5QA74) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 337 Score = 284 bits (727), Expect = 1e-76 Identities = 142/188 (75%), Positives = 157/188 (83%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 LQI+RDRGY+ + KN QDGSYPIDAV MPVRN N+SI S GNGN+K EILFLEIWTNGS Sbjct: 149 LQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVRNANHSIHSYGNGNQKQEILFLEIWTNGS 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTPKEAL+EASRNLIDLF+PFLHAEEE +FEEN+NRFT P FTF RL NLKKNKK I Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEEDINFEENQNRFTVPPFTFPDRLANLKKNKKEIA 268 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHL 54 L CIFIDQ EL RTYNCLKR+NIHTLLDLLS ++EDLM+I+ FR+ED K I DTL KH Sbjct: 269 LKCIFIDQSELPPRTYNCLKRSNIHTLLDLLSNSQEDLMKIEYFRIEDVKQILDTLRKHF 328 Query: 53 PIDLLKNK 30 IDL KNK Sbjct: 329 AIDLPKNK 336
>RPOA_PHAAO (Q3BAK5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 337 Score = 273 bits (698), Expect = 3e-73 Identities = 133/190 (70%), Positives = 156/190 (82%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +LQIKRDRGY+ + + DGSYPID V MPVRN N+SI S GNGNEK EILF+EIWTNG Sbjct: 148 ELQIKRDRGYRMKSTNDSHDGSYPIDIVSMPVRNANHSIHSYGNGNEKQEILFIEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEALYEASRNLIDL +PFLHAEEE +F+EN+NR+ P F+FQ + TN KKNKKGI Sbjct: 208 SLTPKEALYEASRNLIDLLIPFLHAEEEDMNFKENENRWNLPPFSFQDKFTNFKKNKKGI 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 PL CIFIDQ EL+SRTYNCLKR+NIHTLLDLLS ++EDLM+++ FR ED K I T++KH Sbjct: 268 PLTCIFIDQSELSSRTYNCLKRSNIHTLLDLLSHSQEDLMKMEYFRTEDVKQILSTVQKH 327 Query: 56 LPIDLLKNKL 27 I+LL KL Sbjct: 328 FAINLLNKKL 337
>RPOA_CALFE (Q7YJU6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 340 Score = 267 bits (683), Expect = 1e-71 Identities = 134/191 (70%), Positives = 156/191 (81%), Gaps = 2/191 (1%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +LQI+RDRGY+ + NYQDGSYPIDAV MPVRN N+SI S G+GNEK EILFLEIWTNG Sbjct: 148 ELQIERDRGYRMKAPNNYQDGSYPIDAVSMPVRNANHSIHSYGSGNEKQEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEG--TSFEENKNRFTPPLFTFQKRLTNLKKNKK 243 SLTPKEAL+EASRNLIDLF+PFLHAEE+ + E+N+NRFT FT RL N++KNKK Sbjct: 208 SLTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLEDNQNRFTVSPFTLHDRLGNIRKNKK 267 Query: 242 GIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLE 63 I L CIFIDQ EL +RTYNCLKR+NIHTLLDLL+ ++EDLMRI+ FR+ED K I D L+ Sbjct: 268 EIALKCIFIDQSELPTRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHFRIEDIKQILDILQ 327 Query: 62 KHLPIDLLKNK 30 KH IDL KNK Sbjct: 328 KHFGIDLPKNK 338
>RPOA_SPIOL (P06505) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 335 Score = 252 bits (644), Expect = 5e-67 Identities = 126/188 (67%), Positives = 153/188 (81%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 LQ++R+RGY + N+QDGS+PIDA+FMPVRNVN+SI S GNGNEK EILFLEIWTNGS Sbjct: 149 LQLERNRGYHIKAPNNFQDGSFPIDALFMPVRNVNHSIHSYGNGNEKQEILFLEIWTNGS 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTPKEALYEASRNLIDL +PFLHA EE + E+N+++ + PLFTF RL ++KNKK I Sbjct: 209 LTPKEALYEASRNLIDLLIPFLHA-EENVNLEDNQHKVSLPLFTFHNRLAEIRKNKKKIA 267 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHL 54 L IFIDQLEL R YNCLK++NIHTLLDLL+ ++EDL+++ FR+ED K I+ TLEKH Sbjct: 268 LKFIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKMKHFRIEDVKQIFGTLEKHF 327 Query: 53 PIDLLKNK 30 ID LKNK Sbjct: 328 VID-LKNK 334
>RPOA_NYMAL (Q6EW20) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 341 Score = 251 bits (641), Expect = 1e-66 Identities = 131/194 (67%), Positives = 150/194 (77%), Gaps = 2/194 (1%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +L+I+R RGY T + NYQDGSYPIDAV MPVRN N+SI S GNGNEK EILFLEIWTNG Sbjct: 148 ELKIERGRGYCTRTQNNYQDGSYPIDAVSMPVRNANHSIHSYGNGNEKQEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEE--GTSFEENKNRFTPPLFTFQKRLTNLKKNKK 243 SLTPKEALYEASRNLIDLF+PFLHAEE+ + E+N R + P F F L N+K+ Sbjct: 208 SLTPKEALYEASRNLIDLFIPFLHAEEQDINRNMEDNLKRASVPFFAFDDGLDNIKRE-- 265 Query: 242 GIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLE 63 I L IFIDQLEL RTYNCLKR+NIHTLLDLLSK++EDLMRI+ FR+ED K I+D L+ Sbjct: 266 -IILKRIFIDQLELPPRTYNCLKRSNIHTLLDLLSKSQEDLMRIEHFRVEDVKQIFDILQ 324 Query: 62 KHLPIDLLKNKLSF 21 K IDLLKN F Sbjct: 325 KGFTIDLLKNSNQF 338
>RPOA_EUCGG (Q49KW6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 337 Score = 251 bits (640), Expect = 1e-66 Identities = 124/177 (70%), Positives = 142/177 (80%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 LQI+R+RGY + KN+QDGSYPIDAVFMPVRN N+SI S GNGNEK EILFLEIWTNGS Sbjct: 149 LQIERNRGYHIKTPKNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTPKEAL+EASRNLIDLF+PFLHAEEE E N+ + T P FTF RL L+K KK I Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHAEEENLHLENNQYKVTLPFFTFHDRLAKLRKTKKEIA 268 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLE 63 L IFIDQ EL RTYNCLKR NIHTL DLL+K++EDLM+++ FR+ED K I D+LE Sbjct: 269 LKSIFIDQFELPPRTYNCLKRYNIHTLFDLLNKSQEDLMKMEYFRIEDVKQILDSLE 325
>RPOA_LOTJA (Q9BBQ4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 333 Score = 247 bits (631), Expect = 2e-65 Identities = 127/185 (68%), Positives = 147/185 (79%), Gaps = 4/185 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 LQI+RDRGY+ KN+QDGSY IDA+FMPVRN N+SI S NGNEK EILFLEIWTNGS Sbjct: 149 LQIERDRGYRINTLKNFQDGSYNIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGS 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRL--TNLKKNKKG 240 LTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFT L T LKK KK Sbjct: 209 LTPKEALYEASRNLIDLFIPFLHAEEEKLNFENNEHKVTLPLFTCHDLLAKTKLKKKKKE 268 Query: 239 IPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL-- 66 I IFIDQLEL + YNCLK++NIHTLL+LL+K++EDLM+I+ FR+ED KHI D L Sbjct: 269 IAFKSIFIDQLELPPKIYNCLKKSNIHTLLELLTKSKEDLMKIEHFRVEDVKHILDILEI 328 Query: 65 EKHLP 51 EKH P Sbjct: 329 EKHFP 333
>RPOA_TOBAC (P06269) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 337 Score = 242 bits (617), Expect = 7e-64 Identities = 123/188 (65%), Positives = 144/188 (76%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 LQI+R+RGY + N+QDGSYPIDAVFMPVRN N+SI S GNGNEK EILFLEIWTNGS Sbjct: 149 LQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTPKEAL+EASRNLIDLF+PFLH EE+ ++N++ FTF +L L KNKK I Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAKLIKNKKKIA 268 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHL 54 L IFIDQ EL SR YNCLK +NI+TLLDLL+ ++EDLM+I+ FR ED K I LEK+ Sbjct: 269 LKSIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDVKRILGILEKYF 328 Query: 53 PIDLLKNK 30 IDL KNK Sbjct: 329 VIDLAKNK 336
>RPOA_NICTO (Q33C00) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 337 Score = 242 bits (617), Expect = 7e-64 Identities = 123/188 (65%), Positives = 144/188 (76%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 LQIKR+RGY + N+QDGSYPIDAVFMPVRN N+SI S GNGNEK EILFLEIWTNGS Sbjct: 149 LQIKRNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTPKEAL+EASRNLIDLF+PFLH EE+ ++N++ FTF +L L KNKK I Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHIEEDNLYLQDNQHTVPLSPFTFHDKLAKLIKNKKKIA 268 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHL 54 L IFIDQ EL SR YNCLK +NI+TLLDLL+ ++EDLM+I+ FR ED K I LEK+ Sbjct: 269 LKSIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDVKQILGILEKYF 328 Query: 53 PIDLLKNK 30 IDL KN+ Sbjct: 329 VIDLAKNE 336
>RPOA_NICSY (Q3C1M3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 337 Score = 242 bits (617), Expect = 7e-64 Identities = 123/188 (65%), Positives = 144/188 (76%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 LQI+R+RGY + N+QDGSYPIDAVFMPVRN N+SI S GNGNEK EILFLEIWTNGS Sbjct: 149 LQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTPKEAL+EASRNLIDLF+PFLH EE+ ++N++ FTF +L L KNKK I Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAKLIKNKKKIA 268 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHL 54 L IFIDQ EL SR YNCLK +NI+TLLDLL+ ++EDLM+I+ FR ED K I LEK+ Sbjct: 269 LKSIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDVKRILGILEKYF 328 Query: 53 PIDLLKNK 30 IDL KNK Sbjct: 329 VIDLAKNK 336
>RPOA_PANGI (Q68RX5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 353 Score = 241 bits (615), Expect = 1e-63 Identities = 125/193 (64%), Positives = 148/193 (76%), Gaps = 2/193 (1%) Frame = -1 Query: 593 LQIKRDRGYQTEL-RKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 LQI+R+RGY + N+QDGSYPIDAVFMPVRN N+SI S GNGNEK EILFLEIWTNG Sbjct: 149 LQIERNRGYLIKTPNNNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNG 208 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTPKEAL++ASRNLIDLF+PFLH EEE +N++ P FTF ++LT L+KNKK I Sbjct: 209 SLTPKEALHQASRNLIDLFIPFLHTEEENLHLADNQHTVPLPPFTFHEKLTKLRKNKKKI 268 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 L IFIDQ EL R YNCL R+NI+TLLDLL+ ++EDLM+I+ FR+ED K I LEKH Sbjct: 269 ALKSIFIDQSELPPRIYNCLIRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKAILGILEKH 328 Query: 56 LPIDLLKN-KLSF 21 IDL K K+ F Sbjct: 329 FAIDLPKKLKIGF 341
>RPOA_SOYBN (Q2PMQ3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 333 Score = 241 bits (615), Expect = 1e-63 Identities = 121/180 (67%), Positives = 146/180 (81%), Gaps = 2/180 (1%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +L+I+R+RGY+ + KN+QDGSYPIDA FMPVRNVN+SI S NGNEK EILFLEIWTNG Sbjct: 148 ELKIERNRGYRIKTLKNFQDGSYPIDATFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLT--NLKKNKK 243 SLTPKEALYEASRNLIDLF+PFLHAEE+ + E N+++ T PLFTF L L+K KK Sbjct: 208 SLTPKEALYEASRNLIDLFIPFLHAEEDNFNLENNQHKVTLPLFTFHDILAKEKLRKKKK 267 Query: 242 GIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLE 63 I L IFIDQLEL R YNCLKR+NIHTLL+LL+ ++EDL++I+ FR+ED K+I D LE Sbjct: 268 EIALKSIFIDQLELPPRIYNCLKRSNIHTLLELLNNSQEDLLKIEHFRVEDVKYILDFLE 327
>RPOA_SOLTU (Q2VEE8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 337 Score = 241 bits (614), Expect = 2e-63 Identities = 121/188 (64%), Positives = 145/188 (77%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 LQI+R+RGY + N+QDGSYPIDAVFMPVRN N+SI S GNGNEK EILF+EIWTNGS Sbjct: 149 LQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFIEIWTNGS 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTPKEAL++ASRNLIDLF+PFLH EE+ ++N++ FTF +L L KNKK I Sbjct: 209 LTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAKLIKNKKKIA 268 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHL 54 L IFIDQ EL+SR YNCLK +NI+TLLDLL+ ++EDLM+I+ FR ED K I LEK+ Sbjct: 269 LKSIFIDQSELSSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQILGILEKYF 328 Query: 53 PIDLLKNK 30 IDL KNK Sbjct: 329 VIDLAKNK 336
>RPOA_ATRBE (Q8S8V9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 337 Score = 241 bits (614), Expect = 2e-63 Identities = 122/188 (64%), Positives = 144/188 (76%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 LQI+R+RGY + +N+QDGSYPIDAVFMPVRN N+SI S GNGNEK EILFLEIWTNGS Sbjct: 149 LQIERNRGYLIKTPQNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTPKEAL+EASRNLIDLF+PFLH EE+ ++N++ FTF +L L KN K I Sbjct: 209 LTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFHDKLAKLIKNNKKIA 268 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHL 54 L IFIDQ EL SR YNCLK +NI+TLLDLL+ ++EDLM+I+ FR ED K I LEK+ Sbjct: 269 LKSIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQILGILEKYF 328 Query: 53 PIDLLKNK 30 IDL KNK Sbjct: 329 VIDLAKNK 336
>RPOA_CUCSA (Q4VZK3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 333 Score = 236 bits (602), Expect = 4e-62 Identities = 118/180 (65%), Positives = 141/180 (78%), Gaps = 2/180 (1%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +L+I+R+RGY + N+QD SYP+DA+FMPVRNVN+SI S NGNEK EILFLEIWTNG Sbjct: 148 ELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSF--EENKNRFTPPLFTFQKRLTNLKKNKK 243 SLTPKEAL+EASRNLIDLF+PFLHAEEE +F + NK + T PLFTF ++L L+K KK Sbjct: 208 SLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKKKVTLPLFTFHEKLAKLRKKKK 267 Query: 242 GIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLE 63 I L IFIDQ EL R YNCLKR NIHTL DLL+ + ++LM+I FR+ED KHI D LE Sbjct: 268 EIALKYIFIDQSELPPRIYNCLKRCNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILE 327
>RPOA_PHAAN (Q8MC99) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 333 Score = 236 bits (601), Expect = 5e-62 Identities = 120/180 (66%), Positives = 144/180 (80%), Gaps = 2/180 (1%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +L+I+R+RGY+ + KN+QDGSY IDA FMPVRNVNYSI S NGNEK EILFLEIWTNG Sbjct: 148 ELKIERNRGYRIKTLKNFQDGSYDIDARFMPVRNVNYSIHSYVNGNEKQEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLT--NLKKNKK 243 SLTPKEALYEAS+NLIDLF+PFLHAEEE + E+ K++ T PLFTF L L+KNKK Sbjct: 208 SLTPKEALYEASQNLIDLFIPFLHAEEENFNLEKKKHKVTLPLFTFHDILVKDKLRKNKK 267 Query: 242 GIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLE 63 I L IFIDQLEL R YNCLKR+NIHTLL+LL+ ++E L++I+ FR+ED K I D L+ Sbjct: 268 EIALKSIFIDQLELPPRIYNCLKRSNIHTLLELLNNSQEXLLKIEHFRVEDGKSILDILK 327
>RPOA_PEA (P13911) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 334 Score = 234 bits (597), Expect = 1e-61 Identities = 118/182 (64%), Positives = 143/182 (78%), Gaps = 4/182 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +LQI+R RGY+ + N QDGSY IDAVFMPVRN N+SI S NGN+K EILFLEIWTNG Sbjct: 147 ELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNQKQEILFLEIWTNG 206 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKR----LTNLKKN 249 SLTPKEALYEASRNLIDLF+PFLHAEEE +FE N+++ T PLFTF L+KN Sbjct: 207 SLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKMTLPLFTFHDHDRFVKDKLRKN 266 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 +K I L IFIDQLEL R YNCLK++NIHT+L+LL+K++EDLM+I+ FR+ED K I + Sbjct: 267 QKEITLKSIFIDQLELPPRIYNCLKKSNIHTVLELLNKSQEDLMKIEHFRVEDLKFILNI 326 Query: 68 LE 63 L+ Sbjct: 327 LQ 328
>RPOA_OENHO (Q9MTJ3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 367 Score = 233 bits (595), Expect = 2e-61 Identities = 120/177 (67%), Positives = 136/177 (76%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 LQI+R+RGY + N+QDGSYPIDAVFMPVRN N+SI S GN NEK EILFLEIWTNGS Sbjct: 150 LQIERNRGYHIKSPNNFQDGSYPIDAVFMPVRNANHSIHSYGNQNEKQEILFLEIWTNGS 209 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTPKEAL+EASRNLIDLFLPFLHAEEE +NK T PLFTF K+L L+K K I Sbjct: 210 LTPKEALHEASRNLIDLFLPFLHAEEENLHLGKNKYNVTFPLFTFHKKLAKLRKPKNEIA 269 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLE 63 L IFIDQLEL R YN LK + IHTL DLL+K++EDLM++ FR+ED K I D LE Sbjct: 270 LKSIFIDQLELPPRIYNSLKGSKIHTLSDLLNKSQEDLMKMKHFRIEDVKQILDILE 326
>RPOA_SINAL (Q9XQN8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 327 Score = 231 bits (589), Expect = 1e-60 Identities = 110/178 (61%), Positives = 141/178 (79%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 L+I+R+RGY ++ N++D SYPIDAVFMPV+N N+SI S GNGNEK EILF+EIWTNGS Sbjct: 149 LKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQNANHSIHSYGNGNEKQEILFIEIWTNGS 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTPKEALYEASRNLI+LF+PFLH EEE E N+++ T P+F F +L NL++ KK + Sbjct: 209 LTPKEALYEASRNLINLFIPFLHVEEETFYLENNQHQVTLPVFPFHNKLVNLRQKKKELA 268 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEK 60 IFIDQLEL R YNCLK++NIHTLLDLL+ ++EDL++++ F +ED K + D LEK Sbjct: 269 FQYIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKMEHFHIEDVKKLLDILEK 326
>RPOA_AMBTC (P60314) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 334 Score = 228 bits (582), Expect = 8e-60 Identities = 119/186 (63%), Positives = 142/186 (76%), Gaps = 2/186 (1%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 L+I+R+RGY+T R QD SYPIDAV MPVRN NYSI GN NEK EILFLEIWTNGS Sbjct: 149 LEIERNRGYRT--RTTNQDASYPIDAVSMPVRNANYSIQCYGNENEKQEILFLEIWTNGS 206 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLT--NLKKNKKG 240 LTPKEALYEASRNLIDLF+PFLHAEE ++++N FT P F F + L + ++KK Sbjct: 207 LTPKEALYEASRNLIDLFIPFLHAEERDLHLDDDQNIFTAPFFPFHEGLAYIGIGESKKR 266 Query: 239 IPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEK 60 I L IFIDQLEL+ RTYNCLKR+NIHTLLDLLSK++EDL +I FR+ED K + D L+K Sbjct: 267 IALKRIFIDQLELSPRTYNCLKRSNIHTLLDLLSKSQEDLRKIQHFRVEDVKRVLDILKK 326 Query: 59 HLPIDL 42 ++L Sbjct: 327 RFAMNL 332
>RPOA_ARATH (P56762) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 329 Score = 228 bits (582), Expect = 8e-60 Identities = 113/181 (62%), Positives = 140/181 (77%), Gaps = 2/181 (1%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +L+I+R+RGY ++ N++D SYPIDAVFMPV N N+SI S GNGNEK EILFLEIWTNG Sbjct: 148 ELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVENANHSIHSYGNGNEKQEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK--K 243 SLTPKEAL++ASRNLI+LF+PFLH EEE E N+++ T P F F RL NL+K K K Sbjct: 208 SLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPFFPFHNRLVNLRKKKKTK 267 Query: 242 GIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLE 63 + IFIDQLEL R YNCLK++NIHTLLDLL+ ++EDL++I+ F +ED K I D LE Sbjct: 268 ELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKIEHFHVEDVKKILDILE 327 Query: 62 K 60 K Sbjct: 328 K 328
>RPOA_LACSA (Q332U5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 335 Score = 227 bits (578), Expect = 2e-59 Identities = 117/188 (62%), Positives = 141/188 (75%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 LQI+++RGY + +QDGSYPID VFMPVRN N+SI S NGN+ EILFLEIWTNGS Sbjct: 149 LQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVRNANHSIHSYENGNK--EILFLEIWTNGS 206 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTPKEALYEASRNLIDL +PFLH +EE + E N++ P FTF +L L KNKK + Sbjct: 207 LTPKEALYEASRNLIDLLIPFLHTKEENLNLEGNQHMVPLPPFTFYDKLAKLTKNKKKMA 266 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHL 54 L IFIDQ EL R YNCLKR+NI+TLLDLL+ ++EDLM+++ FR+ED K I LEK+ Sbjct: 267 LKSIFIDQSELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILGILEKNF 326 Query: 53 PIDLLKNK 30 IDL KNK Sbjct: 327 VIDLPKNK 334
>RPOA_CUSRE (Q8SKY1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 335 Score = 209 bits (533), Expect = 4e-54 Identities = 107/187 (57%), Positives = 134/187 (71%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 L+I+R+ GY + N++DGSYPIDA+ MPVRN N+SI S GN EK EILFLEIWTNGS Sbjct: 149 LKIERNHGYFIKTHANFEDGSYPIDALLMPVRNANHSINSYGN--EKQEILFLEIWTNGS 206 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTPKEAL+EASRNLIDLF+PFLH EEE E+ + FT ++ L+KNKK + Sbjct: 207 LTPKEALHEASRNLIDLFIPFLHMEEENLHLEDADHTIPLSPFTVYDKVAKLRKNKKKLS 266 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHL 54 L IFIDQLE + YNCLK++NI TLLDLL+ ++EDL++I+ F +ED K I L KH Sbjct: 267 LESIFIDQLEFPPKIYNCLKKSNIFTLLDLLNNSQEDLIKIEHFHLEDVKQILGILGKHF 326 Query: 53 PIDLLKN 33 +D KN Sbjct: 327 ALDSPKN 333
>RPOA_CUSJA (Q49CA2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 332 Score = 207 bits (528), Expect = 1e-53 Identities = 108/187 (57%), Positives = 136/187 (72%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 L+I+R+RGY + N++DGSYPIDAVFMPV+N N+SI S GN EK EILFLEIWTNGS Sbjct: 149 LKIERNRGYFIKTHANFEDGSYPIDAVFMPVQNANHSIHSYGN--EKQEILFLEIWTNGS 206 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTPKEAL+EASRNLIDLF+PFLH E+E E+ + FT ++ KNKK + Sbjct: 207 LTPKEALHEASRNLIDLFIPFLHMEKENLPLEDADHTIPLSPFTVYYKVA---KNKKKLS 263 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHL 54 L +FIDQLE + YNCLK++NI TLLDLL+ ++EDL++I+ FR+ED K I L KH Sbjct: 264 LESLFIDQLEFPPKIYNCLKKSNIFTLLDLLNNSQEDLIKIEHFRLEDVKQILAILGKHF 323 Query: 53 PIDLLKN 33 +DL KN Sbjct: 324 ALDLPKN 330
>RPOA_PINTH (P41629) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 335 Score = 204 bits (519), Expect = 2e-52 Identities = 106/187 (56%), Positives = 129/187 (68%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 LQI+++RGY NYQDG +PIDAVFMPVR+ NYSI S G+GNE E+LFLEIWTNG Sbjct: 149 LQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIREVLFLEIWTNGG 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTP+EALYEASRNLIDLF+PFLH EE+ NK F LT+ + K+ I Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDTGETKEKIA 268 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHL 54 IFIDQLEL +TYN L+RANIHTLLDLL+ + EDLMRI+ F E + + + L+K Sbjct: 269 FQLIFIDQLELPPKTYNSLRRANIHTLLDLLNYSREDLMRIEHFGKESVEQVLEVLQKLF 328 Query: 53 PIDLLKN 33 ID +N Sbjct: 329 AIDPPRN 335
>RPOA_PINKO (Q85X01) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 335 Score = 201 bits (512), Expect = 1e-51 Identities = 104/187 (55%), Positives = 127/187 (67%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 LQI+++RGY NYQDG +PIDAVFMPVR+ NYSI S G+GNE E+LFLEIWTNG Sbjct: 149 LQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVRDANYSIHSYGSGNEIQEVLFLEIWTNGG 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 LTP+EALYEASRNLIDLF+PFLH EE+ NK F LT+ + K+ I Sbjct: 209 LTPREALYEASRNLIDLFIPFLHGEEQNIDGMNNKKGSNMLPFPLSHVLTDTGETKEKIA 268 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHL 54 IFIDQLEL +TYN L+RANIHTLLDLL+ + EDLM+I+ E + + + L K Sbjct: 269 FKHIFIDQLELPPKTYNSLRRANIHTLLDLLNYSREDLMKIEHLEKESVEQVLEVLRKRF 328 Query: 53 PIDLLKN 33 ID +N Sbjct: 329 AIDPPRN 335
>RPOA_MARPO (P06270) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 340 Score = 189 bits (481), Expect = 4e-48 Identities = 94/190 (49%), Positives = 132/190 (69%), Gaps = 1/190 (0%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +L I++DRGY+ E + YQ+G +P+DAVFMP+RN NYS+ S + + EILFLEIWT+G Sbjct: 148 ELNIEKDRGYRIENLQKYQEGLFPVDAVFMPIRNANYSVHSFESEKKIKEILFLEIWTDG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE-ENKNRFTPPLFTFQKRLTNLKKNKKG 240 SLTPKEALYEASRNLIDLF+P +++E++ +F E N F FQ +++K K Sbjct: 208 SLTPKEALYEASRNLIDLFIPLINSEKKEKNFGIEKTNESNMSYFPFQSVSLDIEKMTKD 267 Query: 239 IPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEK 60 + IFIDQLEL +R YNCLK+ N+HT+ DLL +E+DL++I +F + + + + L+K Sbjct: 268 VAFKHIFIDQLELPARAYNCLKKVNVHTIADLLHYSEDDLIKIKNFGKKSVEQVLEALKK 327 Query: 59 HLPIDLLKNK 30 I L KNK Sbjct: 328 RFSIQLPKNK 337
>RPOA_TAKLE (Q60F88) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 382 Score = 184 bits (467), Expect = 2e-46 Identities = 96/198 (48%), Positives = 133/198 (67%), Gaps = 6/198 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +L+I++D GY+ E DG+ P DAVFMP+RN NYS+ S NGNE EILFLEIWTNG Sbjct: 148 ELKIEKDFGYRIEDPIKSADGNSPADAVFMPIRNANYSVHSFENGNETQEILFLEIWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEE------GTSFEENKNRFTPPLFTFQKRLTNLK 255 S+TPKEALYEASR+LI+LF+PFLHAE++ ++E N + F+ P + ++ Sbjct: 208 SVTPKEALYEASRSLINLFIPFLHAEKKEFIYGLKNTYESNMSYFSSPSLS-----ADID 262 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 + KG+ IFIDQLEL +R YNC KR N HT+ D L+ +++DLM+I +F + + + Sbjct: 263 EMTKGVTFKHIFIDQLELPARAYNCPKRVNAHTISDPLNYSQDDLMKIKNFGKKSVEQVL 322 Query: 74 DTLEKHLPIDLLKNKLSF 21 + +K I+L KNKL F Sbjct: 323 EASQKRFSINLPKNKLHF 340
>RPOA_ANTFO (Q85A01) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 340 Score = 178 bits (451), Expect = 1e-44 Identities = 92/191 (48%), Positives = 132/191 (69%), Gaps = 1/191 (0%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 L I++DRGY+ E Y+DG++ ++A F P+RN NYS+ S N EK EILF+E+WTNGS Sbjct: 149 LGIRKDRGYRIENPVKYEDGNFAVNAAFTPIRNANYSVHSFENEKEKQEILFIEVWTNGS 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFE-ENKNRFTPPLFTFQKRLTNLKKNKKGI 237 LTPKEAL EAS++LI+LF+P LH ++E + + ENK+ + F LTN+ + +K I Sbjct: 209 LTPKEALREASQSLINLFIPLLHEKKERENRKLENKDEYNVLRSCFS--LTNIGEVRKEI 266 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 IFIDQLEL +R YN LK+ ++HT+ DLL+ ++EDLM+I +F + + + + L+KH Sbjct: 267 SFKHIFIDQLELPARAYNGLKKVDVHTISDLLNYSQEDLMKIKNFGKKSIQQVVEALQKH 326 Query: 56 LPIDLLKNKLS 24 I L KNK S Sbjct: 327 FAIHLPKNKFS 337
>RPOA_MARQU (Q9BBN0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 347 Score = 166 bits (419), Expect = 6e-41 Identities = 87/186 (46%), Positives = 121/186 (65%), Gaps = 4/186 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +L I+ D GY+ E Y+DG +P+DAVFMPVRNVNYS+ G+G E EILF+E+WTNG Sbjct: 154 ELNIECDCGYRIESLNEYRDGEFPVDAVFMPVRNVNYSVHPFGSGKEMREILFIEVWTNG 213 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTP EA+ +AS++ IDL PFLH + E E+ NR + L F R+ ++ K++ Sbjct: 214 SLTPTEAISKASKSSIDLLSPFLHTKHEDIPDFES-NRDSSSLMKFSSRVDDVDKSEGDF 272 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMED----RKHIWDT 69 N FIDQLEL +R +NCLKRA IHT+ DLLS + +DL+++ SF + + +W+ Sbjct: 273 FKN-TFIDQLELPARAFNCLKRAEIHTISDLLSYSRDDLLKLKSFGKKSVDQVSRALWER 331 Query: 68 LEKHLP 51 LP Sbjct: 332 FATELP 337
>RPOA_PSINU (Q8WHZ1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 340 Score = 156 bits (394), Expect = 5e-38 Identities = 83/191 (43%), Positives = 119/191 (62%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +L+I+RD GY+T K Q G + IDA+F P+RN NYSI S + N+ EILFLE+WTNG Sbjct: 148 ELRIERDCGYRTLNLKESQSGEFFIDALFTPIRNANYSIHSFESNNKVREILFLEVWTNG 207 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 SLTP AL EASR+LIDLF+ FL+ E+E + E N F ++ + K + Sbjct: 208 SLTPGAALSEASRDLIDLFIIFLNMEKEESIKEIENNELNIKNFPSTSISVDIDRMAKEV 267 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 IFIDQLEL +R YNCLK+ +HT+ DLL T+ DL ++ +F + + + + L++ Sbjct: 268 AFKQIFIDQLELPARAYNCLKKMQVHTVSDLLKYTQYDLKKVKNFGNKSVEQVVEALQER 327 Query: 56 LPIDLLKNKLS 24 I L K++ + Sbjct: 328 FAIQLPKDQFN 338
>RPOA_PHYPA (P60315) DNA-directed RNA polymerase alpha chain, chloroplast| precursor (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 450 Score = 145 bits (367), Expect = 7e-35 Identities = 80/189 (42%), Positives = 120/189 (63%), Gaps = 1/189 (0%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEIWTN 420 +L +++ GY+ DG + ID+VFMPVRN NYS+ S + + EILFLEIWTN Sbjct: 260 ELDVEKGCGYRMGDHTKSGDGRFYIDSVFMPVRNANYSVHSYESEPDVTQEILFLEIWTN 319 Query: 419 GSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKG 240 GS+TP+EAL+EA+R LIDLFLPFLH +++ + K + FT + ++ + + K Sbjct: 320 GSITPEEALHEAARCLIDLFLPFLHPKKKEVTNSATKMHKS---FTMSQFNSSAEMSAKE 376 Query: 239 IPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEK 60 + L +++DQL + S+ YN LKRANI+T+ DLL T++DL+ I +F + I + L+ Sbjct: 377 VDLRHVYVDQLRIPSKAYNSLKRANINTVSDLLDYTQDDLLSIPNFGRKSVDDILEALQA 436 Query: 59 HLPIDLLKN 33 IDL +N Sbjct: 437 QFSIDLPEN 445
>RPOA_ADICA (Q85FJ1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 345 Score = 142 bits (358), Expect = 7e-34 Identities = 85/190 (44%), Positives = 112/190 (58%), Gaps = 8/190 (4%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +L+I++D GY+ E G +PIDAVFMPVRNVNYSI G+G EILF+EIWTNG Sbjct: 149 ELEIEKDCGYRIENLAKSGKGQFPIDAVFMPVRNVNYSIHLFGSGRATQEILFIEIWTNG 208 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSF----EENKNRFTPPLFTFQKRLTNLKKN 249 SLTP EAL +AS L+DL FL+ S E++ + P Q TN N Sbjct: 209 SLTPHEALRKASEKLMDLLTTFLYVRGGDVSLFENGEDSLDLTKSPSLQPQFGDTN---N 265 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMED----RKH 81 + L FIDQLEL +R +NCLKRA I+T+ DLL+ + EDL ++ +F + + Sbjct: 266 LEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSKLKNFGRKSVDQVSEA 325 Query: 80 IWDTLEKHLP 51 +WD K LP Sbjct: 326 LWDRFAKELP 335
>RPOA_HUPLU (Q5SD25) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 336 Score = 142 bits (357), Expect = 9e-34 Identities = 77/192 (40%), Positives = 121/192 (63%), Gaps = 7/192 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKH---EILFLEIW 426 +L+I++D GY+ + Y+DG++ +DAVF P+R+VNYSI C ++K E+L EIW Sbjct: 151 ELKIEKDSGYRRQNIVEYKDGNFTVDAVFTPIRSVNYSIH-CFESHDKSIMKEMLLYEIW 209 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE----ENKNRFTPPLFTFQKRLTNL 258 +NGS+TP+EA+YEASR+ I+LFLPFL AE+E F+ N P + ++ Sbjct: 210 SNGSITPEEAIYEASRSSINLFLPFLQAEKEKEDFKGEDIHESNALHPSVSIVVDQMA-- 267 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHI 78 K + IFI+QLEL+ + YN LK+ N+HT+ DLL +++DLM++ +F + + I Sbjct: 268 ----KKVTFQHIFIEQLELSPKAYNFLKKINVHTISDLLDYSQDDLMKMKNFGKKSVEQI 323 Query: 77 WDTLEKHLPIDL 42 + L+K + L Sbjct: 324 LEALQKRFGMRL 335
>RPOA_CHAGL (Q8M9V7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 334 Score = 123 bits (308), Expect = 5e-28 Identities = 71/189 (37%), Positives = 110/189 (58%), Gaps = 5/189 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGS 414 + I++ +GY + + + G + +D VF+P+R+VNYSI S + E L +E+WTNGS Sbjct: 149 IYIQKGKGYSLKNPISIKQGFFLVDPVFIPIRSVNYSIHSFEDEKATKEFLIVEVWTNGS 208 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTS----FEENKNRFTPPLFTFQKRLTNLKKNK 246 + PKEA+ EAS NL++LF P + E + E+ KN+ L + + N+ Sbjct: 209 IEPKEAIKEASYNLVNLFTPLVSQEYQQLKNQLFKEDEKNK---ELNFIETNSNAISDNE 265 Query: 245 KGIPL-NCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 L N IF+DQLEL+SR YN LK+ NI+T+ DLL + EDL++I +F + + + Sbjct: 266 NSYNLYNQIFLDQLELSSRAYNSLKKNNINTISDLLKYSYEDLLKIKNFGKKSADQVIEQ 325 Query: 68 LEKHLPIDL 42 L+K I L Sbjct: 326 LKKRFKIQL 334
>RPOA_MESVI (Q9MUV0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 316 Score = 121 bits (303), Expect = 2e-27 Identities = 73/189 (38%), Positives = 103/189 (54%), Gaps = 3/189 (1%) Frame = -1 Query: 587 IKRDRGYQTE---LRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 I +GYQ ++KN S P+DA+FMP+ VNY + E + LEIWTNG Sbjct: 147 INTGKGYQMADYAIKKNSYISSLPVDAIFMPIHKVNYMVEQDHTSKFLTERVILEIWTNG 206 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 S++P++AL + +IDLF P H E + NKN F+ T K Sbjct: 207 SISPRDALDIGIKKVIDLFNPLHHCSSE---YSTNKNDFS----------TESK------ 247 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKH 57 +N I +++LEL+ R YNCLKRA IHT+ DLL+ ++EDL+ I +F + + + LEK Sbjct: 248 -INDILVEELELSVRAYNCLKRAQIHTISDLLAYSQEDLLEIKNFGRRSAEEVIEALEKK 306 Query: 56 LPIDLLKNK 30 L I L K K Sbjct: 307 LNIYLPKEK 315
>RPOA_SPIMX (O98462) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 344 Score = 113 bits (283), Expect = 4e-25 Identities = 72/195 (36%), Positives = 112/195 (57%), Gaps = 10/195 (5%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNG 417 +L I + RGY + + QDG +P+DA+F PVRNVN+SI + E+ E L LEIWTNG Sbjct: 150 ELIINKGRGYLIQDGNDVQDGYFPVDALFNPVRNVNFSIHNLA---EQQEALILEIWTNG 206 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEG--TSF-EENKNRFTPPLFTFQKRLTNLKKNK 246 ++TP +AL + S NLI LFLP E++ TS ++ N + L ++++ + Sbjct: 207 AITPLDALRQGSENLIHLFLPPFGLEDDTYMTSLGSQDYNIHIKNSLKEKFELHSIERIE 266 Query: 245 KGIPLNCIF-------IDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDR 87 + F I+ LEL++R + CLK ANI+T+ DLL +++DL++I + Sbjct: 267 DSHLIKDQFLEYSKTPIELLELSTRPFKCLKNANIYTINDLLKLSQQDLLKISNMGPSSV 326 Query: 86 KHIWDTLEKHLPIDL 42 K I + L+K I+L Sbjct: 327 KQIVEALDKRFGINL 341
>RPOA_SYNEL (Q8DML0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 321 Score = 110 bits (276), Expect = 2e-24 Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 8/197 (4%) Frame = -1 Query: 596 DLQIKRDRGYQT--ELRKNYQDGSY-PIDAVFMPVRNVNYSIFSCGNGNEK-----HEIL 441 + +I++DRGY++ +R + Y +DAVFMPVR VNY++ S + + + L Sbjct: 142 EFKIEKDRGYRSVERVRDDRLALDYLQLDAVFMPVRRVNYTVDSVRSAGAEGDRQLQDYL 201 Query: 440 FLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTN 261 LEIWTNGSLTP++AL +A+ L+DLF P PL T + T+ Sbjct: 202 KLEIWTNGSLTPQDALNQAATILVDLFSPLKEV----------------PLHTSEATATD 245 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 IP I+QL L+ R YNCLKRA ++T+ DLL ++E+L+ I +F + + Sbjct: 246 DHDETGQIP-----IEQLNLSVRAYNCLKRAQVNTVADLLEYSQEELLEIKNFGQKSAEE 300 Query: 80 IWDTLEKHLPIDLLKNK 30 + + L+KHL I L K Sbjct: 301 VIEALQKHLGITLPPQK 317
>RPOA_CYAPA (P48118) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 315 Score = 110 bits (275), Expect = 3e-24 Identities = 70/194 (36%), Positives = 109/194 (56%), Gaps = 5/194 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGS--YPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIW 426 + +I++ RGY+ +K ++ PIDA+FMPVR VNY + N E E L LEIW Sbjct: 139 EFKIEKGRGYKIIDKKQTENSIDFLPIDAIFMPVRKVNYMVEEIFLRNSEIKERLILEIW 198 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT--SFEENKNRFTPPLFTFQKRLTNLKK 252 NGS+TP++++ +A+ L++LF PF E T S E+ +++ + Sbjct: 199 RNGSVTPQDSISQAAEVLLNLFNPFKKINFENTDDSTEQTEDKISQ-------------- 244 Query: 251 NKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWD 72 I I++L+L+ R YNCLKRA IH++ DLL+ ++E+L+ I +F + K + D Sbjct: 245 ---------IPIEELQLSVRAYNCLKRAQIHSIGDLLNVSQEELLEIRNFGQKSAKEVID 295 Query: 71 TLEKHLPIDLLKNK 30 L+K L I L K K Sbjct: 296 ALQKRLGISLPKRK 309
>RPOA_GUITH (O46914) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 318 Score = 105 bits (262), Expect = 1e-22 Identities = 65/169 (38%), Positives = 96/169 (56%), Gaps = 4/169 (2%) Frame = -1 Query: 524 IDAVFMPVRNVNYSIFSC-GNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFL 348 +D+VFMPV+ VN+ I G N +E L L+IWTNGS++ KEA+ A+ NLI+LF P Sbjct: 165 VDSVFMPVKKVNFRIEETRGENNILNEQLILDIWTNGSISAKEAISNAADNLINLFSPLK 224 Query: 347 HAE-EEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKR 171 + E T +E N+ +N I I++L+L+ R YNCLKR Sbjct: 225 TIDGESETDYETNETSH----------------------INQILIEELQLSVRAYNCLKR 262 Query: 170 --ANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHLPIDLLKNK 30 A+IH++ DLL ++EDL+ I +F + + + D L+K L I+L K K Sbjct: 263 GCAHIHSVADLLDYSQEDLIEIKNFGQKSAEEVIDALQKRLGINLPKEK 311
>RPOA_ANASP (Q8YPK3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 315 Score = 105 bits (261), Expect = 1e-22 Identities = 69/195 (35%), Positives = 107/195 (54%), Gaps = 4/195 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYP---IDAVFMPVRNVNYSIFSC-GNGNEKHEILFLEI 429 + +I+R +GY+T R + S ID++FMPVR VNYS+ +G+ + L LE+ Sbjct: 139 EFRIERGKGYRTVERGREEATSLDFLQIDSIFMPVRKVNYSVEEVRADGSIPKDRLLLEV 198 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 WTNGS++P+EAL A+ L+DLF P E T + N P T Q Sbjct: 199 WTNGSISPQEALSSAAGILVDLFNPLKDISLEPT----DTNSDIPDDPTAQ--------- 245 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 I I++L+L+ R YNCLKRA ++++ DLL T+EDL+ I +F + + + + Sbjct: 246 --------IPIEELQLSVRAYNCLKRAQVNSVADLLDYTQEDLLEIKNFGQKSAEEVVEA 297 Query: 68 LEKHLPIDLLKNKLS 24 L++ L I L + + S Sbjct: 298 LQRRLGITLPQERSS 312
>RPOA_GLOVI (Q7NFF5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 104 bits (259), Expect = 2e-22 Identities = 68/194 (35%), Positives = 110/194 (56%), Gaps = 5/194 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGS----YPIDAVFMPVRNVNYSIFSCGNG-NEKHEILFLE 432 + QI+R +GY+ + + +DG+ IDA+FMPVR VN+++ S + N + + L LE Sbjct: 139 EFQIERGKGYRA-IERGSEDGAAIDYLSIDAIFMPVRKVNWTVESERSAANVEQDRLTLE 197 Query: 431 IWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKK 252 IWT+GSL+P+EAL +A++ L+D P + F PP Q+ N Sbjct: 198 IWTSGSLSPQEALSQAAKILVDQLRPL------------QEITFEPPAEP-QRSAPNT-- 242 Query: 251 NKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWD 72 + + I++L+L+ R YNCLKRA I+T+ DLL TEEDL+ I +F + + + + Sbjct: 243 ------VGQVPIEELQLSVRAYNCLKRAQINTVADLLEYTEEDLLEIKNFGQKSAEEVIE 296 Query: 71 TLEKHLPIDLLKNK 30 L+ + + L K+K Sbjct: 297 ALQDKMGLSLPKDK 310
>RPOA_SYNY3 (P73297) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 101 bits (252), Expect = 1e-21 Identities = 64/193 (33%), Positives = 104/193 (53%), Gaps = 4/193 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYP---IDAVFMPVRNVNYSIFSC-GNGNEKHEILFLEI 429 + +++R GY+ R ++ S ID+VFMPV VNY++ +G + L L+I Sbjct: 139 EFRVERGVGYRVIERGKDENSSLDFLQIDSVFMPVTKVNYTVEDIRADGMSPKDRLILDI 198 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 WTNGS+ P+EAL EAS + +LF+P E + + ++ P Sbjct: 199 WTNGSIQPREALSEASDIIANLFIPLKDLNELEAAHSDYQDEVNP--------------- 243 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 + IP I++L+L+ R YNCLKRA I+++ DLL ++EDL+ I +F ++ + + + Sbjct: 244 ESQIP-----IEELQLSVRAYNCLKRAQINSVADLLEYSQEDLLEIKNFGLKSAEEVIEA 298 Query: 68 LEKHLPIDLLKNK 30 L+K L I L K Sbjct: 299 LQKRLGITLPHEK 311
>RPOA_PYRSA (Q01569) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 314 Score = 99.4 bits (246), Expect = 7e-21 Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 7/198 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGS--YPIDAVFMPVRNVNYSIFSCGNGNEK-HEILFLEIW 426 + +I+ +GY R + + +DA+FMPV+ VNY + N E L LE+W Sbjct: 139 EFRIETGKGYNLVERDSDESSIDFLQVDAIFMPVKKVNYLSKDIRSENNLIQEQLTLEVW 198 Query: 425 TNGSLTPKEALYEASRNLIDLFLPF----LHAEEEGTSFEENKNRFTPPLFTFQKRLTNL 258 TNGS+ P++A+ +A + L +L P ++ + E++K Sbjct: 199 TNGSIDPQDAVSQAGKILTELLFPLKEINFKPDDSESIIEDSK----------------- 241 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHI 78 +N I I++L+L+ R YNCLKRA IH++ DLL ++EDL+ I +F + + + Sbjct: 242 --------INQILIEELQLSVRAYNCLKRAQIHSVADLLDYSQEDLIEIKNFGQKSAEEV 293 Query: 77 WDTLEKHLPIDLLKNKLS 24 D L+K L I+L K K S Sbjct: 294 IDALQKRLGINLPKEKTS 311
>RPOA_ODOSI (P49465) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 312 Score = 95.1 bits (235), Expect = 1e-19 Identities = 63/163 (38%), Positives = 89/163 (54%), Gaps = 2/163 (1%) Frame = -1 Query: 524 IDAVFMPVRNVNYSIFSC-GNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFL 348 IDA+FMPV+ V++ I + N N+ E LFL+IWTNGS++P+EA+ ASR +I F L Sbjct: 165 IDAIFMPVQKVDFKIENIYDNSNDLTERLFLDIWTNGSMSPEEAVSSASRFIISFFSSLL 224 Query: 347 HAE-EEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKR 171 + + T ENK P KN P I I++L L+ R YNCLKR Sbjct: 225 ENKLPQETKESENKTLSAP-------------KN----PHTNIAIEELHLSVRAYNCLKR 267 Query: 170 ANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHLPIDL 42 A I+T+ DLL + E L + +F + ++ TL+ L I L Sbjct: 268 AQINTIGDLLKYSPEKLQELKNFGRKSADEVFTTLKNKLGIVL 310
>RPOA_GRATL (Q6B8X4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 314 Score = 94.0 bits (232), Expect = 3e-19 Identities = 65/199 (32%), Positives = 102/199 (51%), Gaps = 10/199 (5%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYP---IDAVFMPVRNVNYSIFSCGNGNEK-------HE 447 + +I++ GY+ + K + S IDAVFMPV NY++ EK E Sbjct: 139 EFRIEKGSGYKL-VNKGFDKKSIDFLQIDAVFMPVTKFNYTV------EEKKISPILIQE 191 Query: 446 ILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRL 267 LFLE+WTNGSL+P+EA+ E ++ L LF P + FQ Sbjct: 192 KLFLEVWTNGSLSPQEAISEGAQVLHSLFYPLTN-------------------LNFQN-- 230 Query: 266 TNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDR 87 N N+ +N + I++L+L+ R YNCLKRA I+++ DLL ++++L+ I +F + Sbjct: 231 ANNTDNEYEEEINQVLIEELQLSVRAYNCLKRAQINSISDLLDYSQDELLEIKNFGQKSA 290 Query: 86 KHIWDTLEKHLPIDLLKNK 30 + + + L+ L I L K K Sbjct: 291 EEVIEALQNKLGIRLPKEK 309
>RPOA_PORPU (P51293) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 311 Score = 94.0 bits (232), Expect = 3e-19 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 1/166 (0%) Frame = -1 Query: 524 IDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFL 348 +D+VFMPV VNY + G N + L L+IWTNGS++P+EA+ + + L +LF Sbjct: 165 VDSVFMPVNKVNYKVEEVRVGTNSIKDRLILQIWTNGSISPQEAISQGATVLTNLFCSLR 224 Query: 347 HAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRA 168 + + + NK ++KK ++ + I++L+L+ R YNCLKRA Sbjct: 225 NLDFKSVDTYRNK------------------EDKK---ISQVLIEELQLSVRAYNCLKRA 263 Query: 167 NIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHLPIDLLKNK 30 IH++ DLL ++E+L+ I +F + + + L+K L I L K K Sbjct: 264 QIHSIADLLDYSQEELLEIKNFGQKSAEEVIYALQKTLGISLPKEK 309
>RPOA_CYAME (Q85FU3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 316 Score = 93.2 bits (230), Expect = 5e-19 Identities = 60/188 (31%), Positives = 98/188 (52%), Gaps = 1/188 (0%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEK-HEILFLEIWTN 420 + Q+++ GY+ D PID VFMPV+ VN+ + + L LEIWTN Sbjct: 148 ECQLEQSSGYRLAKPSEMIDW-LPIDGVFMPVKRVNFWVDKALVDKVLVDKALHLEIWTN 206 Query: 419 GSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKG 240 GS++P+EAL++A+R L F PL T + + ++ K + Sbjct: 207 GSISPQEALHQAARILTHWF---------------------NPLQTLEWKTSHTKNEQTM 245 Query: 239 IPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEK 60 L+ + I++L+L+ R YNCLKRA IH++ DL+ T+E+L+ + +F + + + LE+ Sbjct: 246 AQLSNMLIEELDLSVRAYNCLKRAQIHSVADLMQYTQEELLALKNFGQKSVEEVNKALEQ 305 Query: 59 HLPIDLLK 36 L L K Sbjct: 306 KLHCQLKK 313
>RPOA_SYNP6 (O24710) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 309 Score = 92.8 bits (229), Expect = 7e-19 Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 1/168 (0%) Frame = -1 Query: 524 IDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFL 348 +DAVFMPVR VNYS+ G + L LE+WTNGSL+P+EAL +A+ L+ LF P Sbjct: 165 LDAVFMPVRRVNYSVEDARVGESTAIDRLVLEVWTNGSLSPQEALSQAASCLVALFEPLK 224 Query: 347 HAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRA 168 + T + + P + I+ L+L+ R YNCLKRA Sbjct: 225 NVSVGSTHTAD----------------------PEPTPESQTPIEDLQLSVRAYNCLKRA 262 Query: 167 NIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHLPIDLLKNKLS 24 ++++ DLLS T EDL+ I +F + + + + LE+ + I L ++K+S Sbjct: 263 QVNSVADLLSYTYEDLLEIKNFGQKSAEEVVEALER-IGIKLQESKVS 309
>RPOA_THETN (Q8R7Y2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 315 Score = 91.3 bits (225), Expect = 2e-18 Identities = 55/147 (37%), Positives = 88/147 (59%), Gaps = 1/147 (0%) Frame = -1 Query: 548 NYQDGSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIWTNGSLTPKEALYEASRNL 372 N G P+D++F P+R VNY++ + G+ ++ L LE+WTNG++TPKEA+ A+ L Sbjct: 158 NQPIGVIPVDSIFTPIRKVNYTVENTRVGHVTDYDKLTLEVWTNGTITPKEAVSMAADML 217 Query: 371 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSR 192 I F F+ E S P +F ++ KK +K + + I++L+L+ R Sbjct: 218 IKYFQKFISFTGEYKS---------PDVFVEKQE----KKVEKPLDMT---IEELDLSVR 261 Query: 191 TYNCLKRANIHTLLDLLSKTEEDLMRI 111 +YNCLKRA I+T+ +L KTEE++M+I Sbjct: 262 SYNCLKRAGINTVQELTQKTEEEMMKI 288
>RPOA_LACJO (Q74L64) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 89.0 bits (219), Expect = 1e-17 Identities = 55/166 (33%), Positives = 93/166 (56%), Gaps = 4/166 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEI 429 ++ IK RGY D G P+D++F P++ VNY + S G + ++ L LEI Sbjct: 137 NVAIKTGRGYVPASENKTDDMPIGVIPVDSLFSPIKKVNYQVESARVGKRDDYDKLTLEI 196 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 WT+GS+TP +AL A++ L++ F F+ + + +F + + KN Sbjct: 197 WTDGSITPNDALSFAAKILVEHFKVFMSTDMDA--------QFDDVMVEKED-----DKN 243 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 +K + + I++L+L+ R+YNCLKRA I+T+ +L K+E D+MR+ Sbjct: 244 EKKLEMT---IEELDLSVRSYNCLKRAGINTVQELTDKSEADMMRV 286
>RPOA_CYACA (Q9TLV2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 310 Score = 88.2 bits (217), Expect = 2e-17 Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 6/191 (3%) Frame = -1 Query: 596 DLQIKRDRGY---QTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIW 426 +L++++ GY +T +K+ D PID++FMPV+ VNY + + +E L LE+W Sbjct: 143 ELKVEKSSGYKLVETFSKKSPLD-FLPIDSIFMPVKKVNYYVEEILDSKVAYEKLILELW 201 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFL---HAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 TNGSL+P++++ AS NL+ LF P ++E + +E+N +L Sbjct: 202 TNGSLSPQQSINYASDNLVKLFNPLRVLDFSKESSSVYEQN----------------SLI 245 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 K K I++L L+ R YNCLKR + ++ DLL + DL+ I +F + + + Sbjct: 246 KQK--------LIEELCLSVRAYNCLKRVQVDSIGDLLEYSIGDLLEIKNFGQKSVEEVS 297 Query: 74 DTLEKHLPIDL 42 L K + L Sbjct: 298 KALYKKFGVKL 308
>RPOA_LACAC (Q5FM65) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 88.2 bits (217), Expect = 2e-17 Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 4/166 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEI 429 +L +K RGY D G P+D++F P++ VNY + S G + + L EI Sbjct: 137 ELAVKNGRGYVAASDNKSDDMPIGVIPVDSLFSPIKKVNYQVESTRVGKRDDFDKLTFEI 196 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 WT+GS+ P +AL A++ L++ F F A+ T F E + + + Sbjct: 197 WTDGSIKPNDALSFAAKILVEHFKVFESADAN-TKFSEV--------------MVEKEDD 241 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 KK L + I++L+L+ R+YNCLKRA I+TL +L KTE D+MR+ Sbjct: 242 KKEKKLE-MTIEELDLSVRSYNCLKRAGINTLQELTDKTESDMMRV 286
>RPOA_THEMA (Q9X1I2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 336 Score = 87.4 bits (215), Expect = 3e-17 Identities = 64/177 (36%), Positives = 93/177 (52%), Gaps = 8/177 (4%) Frame = -1 Query: 536 GSYPIDAVFMPVRNVNYSIFSCGNGNEK-HEILFLEIWTNGSLTPKEALYEASRNLIDLF 360 G PID VF PV VN+ + G ++ L LEIWT S+ P+EAL +A+ LI+ F Sbjct: 168 GWIPIDGVFSPVIKVNFLTENVRVGKRTDYDKLILEIWTKKSIRPEEALRKAADILINHF 227 Query: 359 ------LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKK-NKKGIPLNCIFIDQLEL 201 LP L EE E + P ++ N N+K ID+LEL Sbjct: 228 KIVTEGLPELKISEEYIITSEEEEAEVPASEHEEEHRENSDVYNRK--------IDELEL 279 Query: 200 TSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHLPIDLLKNK 30 + R+ NCLKRA I T+ DLLSKTEE+L++I +F + + + L++ ++L K + Sbjct: 280 SVRSLNCLKRAKIETIGDLLSKTEEELLKIKNFGQKSLDEVKEKLKEKFGLELRKGE 336
>RPOA_SYMTH (Q67JX1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 315 Score = 87.4 bits (215), Expect = 3e-17 Identities = 53/166 (31%), Positives = 94/166 (56%), Gaps = 4/166 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 ++ + + RGY + D G P+D++F P+R VNY+I GN+ ++ L LE+ Sbjct: 139 EITVSKGRGYVPADQNKTPDMPIGVIPVDSIFSPIRRVNYTIEHTRVGNKTNYDKLTLEV 198 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 WTNG++ P EA A++ L + F+ E+ E + + + ++N Sbjct: 199 WTNGAIRPDEACSWAAKILKEHLELFISLTEDADEIEVMQEK------------EDDERN 246 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 K L + I++L+L+ R+YNCLKRA I+T+ +L+SKT+E++M++ Sbjct: 247 K----LMEMTIEELDLSVRSYNCLKRAGINTIAELVSKTDEEMMKV 288
>RPOA_CLOTE (Q890R0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 315 Score = 86.3 bits (212), Expect = 6e-17 Identities = 53/186 (28%), Positives = 103/186 (55%), Gaps = 8/186 (4%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEI 429 ++ + R RGY ++ R + G+ PID+++ PV+ VN+++ + G ++ L LEI Sbjct: 139 EMTVDRGRGYVSQNRNKVEGMPIGTIPIDSIYTPVKRVNFTVANTRVGQITDYDKLTLEI 198 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFL----HAEEEGTSFEENKNRFTPPLFTFQKRLTN 261 WTNG++ P +A+ +++ LI+ F F+ HA++ E+ ++ Sbjct: 199 WTNGTIMPDDAISLSAKILIEHFKLFMTLTDHADDVEIMVEKEED--------------- 243 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 K +K + + I++L+L+ R+YNCLKRA I+T+ +L +T ED+M++ + + + Sbjct: 244 --KKEKVLEMT---IEELDLSVRSYNCLKRAGINTVQELTERTVEDMMKVRNLGRKSLEE 298 Query: 80 IWDTLE 63 + LE Sbjct: 299 VEQKLE 304
>RPOA_LACSS (Q38UT7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 85.1 bits (209), Expect = 1e-16 Identities = 50/165 (30%), Positives = 91/165 (55%), Gaps = 4/165 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIW 426 + +K+ RGY ++ D G PID+++ P+ VNY + S G + L L++W Sbjct: 138 MTVKKGRGYVAAVQNKSDDMPIGVLPIDSIYTPISRVNYQVESTRVGRRNDFDKLTLDVW 197 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNGS++P+EA+ A++ + + F+ +E + E +K T+ +K Sbjct: 198 TNGSISPREAISLAAKIMTEHLAIFVDLTDEAKNAE----------IMVEKEETHKEKML 247 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 + + I++L+L+ R+YNCLKRA I+T+ +L K+E D+M++ Sbjct: 248 E------MTIEELDLSVRSYNCLKRAGINTVQELTDKSEADMMKV 286
>RPOA_PROMA (Q7V9Y5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 84.7 bits (208), Expect = 2e-16 Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 5/184 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYP---IDAVFMPVRNVNYSI--FSCGNGNEKHEILFLE 432 +L ++R GY+ R+N + IDAVFMPV+ VN++I + G E L +E Sbjct: 139 ELHVERGVGYRPVDRRNEATTAIDLLQIDAVFMPVKKVNFTIDETAVSEGGSTRERLRME 198 Query: 431 IWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKK 252 I T+GS+TP +A+ EA+ LI+LF P T EE P Sbjct: 199 IVTDGSITPDDAVAEAANQLIELFQPLATV----TMVEEVPQEPEPTA------------ 242 Query: 251 NKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWD 72 + IPL ++L L+ R YNCLKRA ++++ DL+ + EDL+ I +F + + + Sbjct: 243 -EAQIPL-----EELNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIE 296 Query: 71 TLEK 60 LE+ Sbjct: 297 ALER 300
>RPOA_PROMM (Q7V523) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 83.2 bits (204), Expect = 5e-16 Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 8/187 (4%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYP---IDAVFMPVRNVNYSI--FSCGNGNEKHEILFLE 432 ++ ++R GY+ R N + IDAVFMPVR VN++I + G E L +E Sbjct: 139 EVHVERGIGYRPVDRHNEDVSAIDLLQIDAVFMPVRRVNFTIDETAVAEGGSTRERLRIE 198 Query: 431 IWTNGSLTPKEALYEASRNLIDLFLPFLHA---EEEGTSFEENKNRFTPPLFTFQKRLTN 261 I T+GS TP +AL E++ LI+LF P EE G E + P Sbjct: 199 IVTDGSTTPDDALAESANQLIELFQPLATVTMVEEPGLEPEPSAESQIP----------- 247 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 +++L L+ R YNCLKRA ++++ DL+ + EDL+ I +F + Sbjct: 248 --------------LEELNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADE 293 Query: 80 IWDTLEK 60 + + LE+ Sbjct: 294 VIEALER 300
>RPOA_CARHZ (Q3A9U4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 313 Score = 82.4 bits (202), Expect = 9e-16 Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 4/166 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEI 429 ++ + R RGY R + G P+D++F PV VN+ + + G ++ L LE+ Sbjct: 137 EMTVARGRGYVPAERNKKGEHVIGVIPVDSIFSPVLKVNFQVENTRVGQITDYDKLTLEV 196 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 WT+GS+ P EA+ A+R +++ F++ E T E ++ + K+ Sbjct: 197 WTDGSIRPDEAVSLAARIMVEHLQLFVNLNERATGVE-----------IMVEKEEDAKEK 245 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 +P I+ L+L+ R+YNCLKRA I+T+ +L+ KTE D+M++ Sbjct: 246 LAEMP-----IEDLDLSVRSYNCLKRAGINTVGELIQKTEADMMKV 286
>RPOA_PROMT (Q46IT2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 82.0 bits (201), Expect = 1e-15 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 5/184 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYP---IDAVFMPVRNVNYSI--FSCGNGNEKHEILFLE 432 ++ ++R GY+ RKN + + IDAVFMP+ VN++I + G E L +E Sbjct: 139 EIHVERGVGYRPVDRKNEETSAIDLLQIDAVFMPINRVNFTIDETAVAEGGSTRERLKME 198 Query: 431 IWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKK 252 + T+GS +P +AL EA+ LI+LF P + EE P Sbjct: 199 LVTDGSTSPDDALAEAANQLIELFQPLATV----SMVEEIPEEPEPAA------------ 242 Query: 251 NKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWD 72 + IPL ++L L+ R YNCLKRA ++++ DL+ + EDL+ I +F + + + Sbjct: 243 -EAQIPL-----EELNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIE 296 Query: 71 TLEK 60 LE+ Sbjct: 297 ALER 300
>RPOA_PROMP (Q7UZW6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 82.0 bits (201), Expect = 1e-15 Identities = 56/184 (30%), Positives = 95/184 (51%), Gaps = 5/184 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYP---IDAVFMPVRNVNYSI--FSCGNGNEKHEILFLE 432 ++ ++R GY+ R+N + + IDAVFMPV+ VN++I + G E L +E Sbjct: 139 EIHVERGVGYRPVDRRNQETTAIDLLQIDAVFMPVKRVNFTIDETAVAEGATGRERLTME 198 Query: 431 IWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKK 252 + T+GS +P +A+ EA+ LI+LF P T EE + + Sbjct: 199 VVTDGSTSPDDAIAEAANQLIELFQPLATV----TMVEE------------------IPE 236 Query: 251 NKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWD 72 + P I +++L L+ R YNCLKRA ++++ DL+ + EDL+ I +F + + + Sbjct: 237 EPEPSPEAQIPLEELNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIE 296 Query: 71 TLEK 60 LE+ Sbjct: 297 ALER 300
>RPOA_BACHK (Q6HPN2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 80.5 bits (197), Expect = 3e-15 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 4/182 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIW 426 L KR RGY +D G PID+++ PV V Y + G ++ L L++W Sbjct: 140 LTAKRGRGYTPADANKSEDQPIGVIPIDSIYTPVSRVTYQVEKTRVGQVANYDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 T+GS+ PKEA+ ++ L + F+ +E + E + ++++ Sbjct: 200 TDGSIGPKEAISLGAKILTEHLNIFVGLTDEAQNAEI---------------MVEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+T+ +L +KTEED+M++ + + + + L Sbjct: 245 KEKVLE-MTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKHKL 303 Query: 65 EK 60 E+ Sbjct: 304 EE 305
>RPOA_BACCZ (Q63H64) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 80.5 bits (197), Expect = 3e-15 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 4/182 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIW 426 L KR RGY +D G PID+++ PV V Y + G ++ L L++W Sbjct: 140 LTAKRGRGYTPADANKSEDQPIGVIPIDSIYTPVSRVTYQVEKTRVGQVANYDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 T+GS+ PKEA+ ++ L + F+ +E + E + ++++ Sbjct: 200 TDGSIGPKEAISLGAKILTEHLNIFVGLTDEAQNAEI---------------MVEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+T+ +L +KTEED+M++ + + + + L Sbjct: 245 KEKVLE-MTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKHKL 303 Query: 65 EK 60 E+ Sbjct: 304 EE 305
>RPOA_BACCR (Q81J18) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 80.5 bits (197), Expect = 3e-15 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 4/182 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIW 426 L KR RGY +D G PID+++ PV V Y + G ++ L L++W Sbjct: 140 LTAKRGRGYTPADANKSEDQPIGVIPIDSIYTPVSRVTYQVEKTRVGQVANYDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 T+GS+ PKEA+ ++ L + F+ +E + E + ++++ Sbjct: 200 TDGSIGPKEAISLGAKILTEHLNIFVGLTDEAQNAEI---------------MVEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+T+ +L +KTEED+M++ + + + + L Sbjct: 245 KEKVLE-MTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKHKL 303 Query: 65 EK 60 E+ Sbjct: 304 EE 305
>RPOA_BACC1 (Q73F69) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 80.5 bits (197), Expect = 3e-15 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 4/182 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIW 426 L KR RGY +D G PID+++ PV V Y + G ++ L L++W Sbjct: 140 LTAKRGRGYTPADANKSEDQPIGVIPIDSIYTPVSRVTYQVEKTRVGQVANYDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 T+GS+ PKEA+ ++ L + F+ +E + E + ++++ Sbjct: 200 TDGSIGPKEAISLGAKILTEHLNIFVGLTDEAQNAEI---------------MVEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+T+ +L +KTEED+M++ + + + + L Sbjct: 245 KEKVLE-MTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKHKL 303 Query: 65 EK 60 E+ Sbjct: 304 EE 305
>RPOA_BACAN (Q81VQ4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 80.5 bits (197), Expect = 3e-15 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 4/182 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIW 426 L KR RGY +D G PID+++ PV V Y + G ++ L L++W Sbjct: 140 LTAKRGRGYTPADANKSEDQPIGVIPIDSIYTPVSRVTYQVEKTRVGQVANYDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 T+GS+ PKEA+ ++ L + F+ +E + E + ++++ Sbjct: 200 TDGSIGPKEAISLGAKILTEHLNIFVGLTDEAQNAEI---------------MVEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+T+ +L +KTEED+M++ + + + + L Sbjct: 245 KEKVLE-MTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKHKL 303 Query: 65 EK 60 E+ Sbjct: 304 EE 305
>RPOA_BACLD (Q65P79) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 79.7 bits (195), Expect = 6e-15 Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 5/183 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD----GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEI 429 L +R RGY T N +D G PID++F PV V+Y + + G ++ L L++ Sbjct: 140 LTAQRGRGY-TPADANKRDDQPIGVIPIDSIFTPVSRVSYQVENTRVGQITNYDKLTLDV 198 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 WT+GS PKEA+ S+ L + F+ +E E + +++ Sbjct: 199 WTDGSTGPKEAIALGSKILTEHLNIFVGLTDEAQHAEI---------------MVEKEED 243 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 +K L + I++L+L+ R+YNCLKRA I+T+ +L +KTEED+M++ + + + + Sbjct: 244 QKEKVLE-MTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAK 302 Query: 68 LEK 60 LE+ Sbjct: 303 LEE 305
>RPOA_CLOAB (Q97EK6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 315 Score = 79.3 bits (194), Expect = 8e-15 Identities = 46/170 (27%), Positives = 96/170 (56%), Gaps = 8/170 (4%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEI 429 ++++ R RGY T+ + D G+ +D+++ P++ VN+++ + ++ L +E+ Sbjct: 139 EIEVNRGRGYVTQNKNKRDDMPIGTIAVDSIYSPIKRVNFTVENTRVAQITDYDKLTIEV 198 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFL----HAEEEGTSFEENKNRFTPPLFTFQKRLTN 261 W NG++ P+EA+ A++ LI+ F F+ HA++ E+ ++ Sbjct: 199 WGNGTIRPEEAISLAAKILIEHFKLFMTLTDHADDVEIMVEKEED--------------- 243 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 K +K + + I++L+L+ R+YNCLKRA I+T+ +L ++ ED+M++ Sbjct: 244 --KKEKVLEMT---IEELDLSVRSYNCLKRAGINTVQELTQRSMEDMMKV 288
>RPOA_CLOPE (Q9LBW9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 315 Score = 79.0 bits (193), Expect = 1e-14 Identities = 49/166 (29%), Positives = 93/166 (56%), Gaps = 4/166 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEI 429 ++ + R RGY T+ + +D + ID+++ PV+ VN+S+ + G ++ L LEI Sbjct: 139 EIVVNRGRGYVTQNKNKTEDLPLSAIAIDSIYTPVKRVNFSVQNTRVGQITDYDKLTLEI 198 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 WTNG++ +EA+ +++ LI+ F F+ + E + +++ Sbjct: 199 WTNGTIRIEEAISLSAKILIEHFKLFMTLTDNANDVEI---------------MIEKEED 243 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 KK L + I++L+L+ R+YNCLKRA I+T+ +L K+ +D+M++ Sbjct: 244 KKEKALE-MTIEELDLSVRSYNCLKRAGINTVQELAGKSMDDMMKV 288
>RPOA_NEPOL (Q9TL28) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 495 Score = 79.0 bits (193), Expect = 1e-14 Identities = 54/161 (33%), Positives = 83/161 (51%) Frame = -1 Query: 524 IDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLH 345 IDAVF PV VNY + + E L ++IWTNGSL+P++AL +A+ LI + L L Sbjct: 240 IDAVFFPVTRVNYRVEEEVINGRRREELVIDIWTNGSLSPRKALDQAAVILIRM-LASLQ 298 Query: 344 AEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN 165 A PPL ++ K K I L I+ L+L+ R++NCLKRAN Sbjct: 299 A--------------PPPLLIEPEKKPTTKTIAKEIALTP--IESLDLSVRSFNCLKRAN 342 Query: 164 IHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHLPIDL 42 I + L++ T ++L+++ +F + + D L + L Sbjct: 343 ITNVGKLIAYTRQELLQLKNFGTKSASEVVDVLNSRFKLAL 383
>RPOA_BACSU (P20429) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 78.6 bits (192), Expect = 1e-14 Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 5/183 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD----GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEI 429 L +R RGY T N +D G PID+++ PV V+Y + + G ++ L L++ Sbjct: 140 LTAQRGRGY-TPADANKRDDQPIGVIPIDSIYTPVSRVSYQVENTRVGQVANYDKLTLDV 198 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 WT+GS PKEA+ S+ L + F+ +E E + +++ Sbjct: 199 WTDGSTGPKEAIALGSKILTEHLNIFVGLTDEAQHAEI---------------MVEKEED 243 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 +K L + I++L+L+ R+YNCLKRA I+T+ +L +KTEED+M++ + + + + Sbjct: 244 QKEKVLE-MTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAK 302 Query: 68 LEK 60 LE+ Sbjct: 303 LEE 305
>RPOA_BACSK (Q5WLN5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 78.6 bits (192), Expect = 1e-14 Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 4/182 (2%) Frame = -1 Query: 593 LQIKRDRGYQ-TELRKNYQD--GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIW 426 LQ KR RGY E KN G PID+++ PV VNY + + G ++ L L++W Sbjct: 140 LQAKRGRGYVLAEGNKNDDQPIGVLPIDSIYTPVARVNYQVENTRVGQVTNYDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 T+GS P+EA+ + L + F+ ++ + E + ++++ Sbjct: 200 TDGSTRPEEAVSLGVKILTEHLNIFVGLTDQAQNAEI---------------MVEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+T+ +L KTEED+M++ R RK + + Sbjct: 245 KEKVLE-MTIEELDLSVRSYNCLKRAGINTVQELTHKTEEDMMKV---RNLGRKSLEEVQ 300 Query: 65 EK 60 EK Sbjct: 301 EK 302
>RPOA_CHLCH (Q3APK0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 327 Score = 78.2 bits (191), Expect = 2e-14 Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 7/186 (3%) Frame = -1 Query: 596 DLQIKRDRGY---QTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEK-HEILFLEI 429 D+ I R RGY + + G PID++F P+RNV +++ + G +E + LE+ Sbjct: 142 DIFIGRGRGYVPAEENRAEGMPLGFIPIDSIFTPIRNVKFTVENTRVGQRTDYEKMILEV 201 Query: 428 WTNGSLTPKEALYEASRNLID---LFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNL 258 T+GS+TP +++ A R + D LF F AEEE T EE K + F +RL Sbjct: 202 ETDGSITPDDSISLAGRVISDHVLLFADFSPAEEEYTE-EEFKQQ--DDEFETMRRLLAT 258 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHI 78 K I+ L+L+ R++NCL+ A I TL +L+S E++L+ +F + + Sbjct: 259 K------------IEDLDLSVRSHNCLRLAEIDTLGELVSHKEDELLNYKNFGKKSLTEL 306 Query: 77 WDTLEK 60 + L+K Sbjct: 307 KEQLDK 312
>RPOA_LACPL (Q88XW0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 78.2 bits (191), Expect = 2e-14 Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 6/161 (3%) Frame = -1 Query: 575 RGYQTELRKNYQDGSYPI-----DAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIWTNGS 414 RGY + +++ PI D+++ P+ VNY + + G + + L L++WTNGS Sbjct: 144 RGYVSAEDNKHREDDMPIGVLAVDSLYSPIERVNYQVENTRVGQRDDFDKLTLDVWTNGS 203 Query: 413 LTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIP 234 +TP EA+ +++ L D F++ +E + + +K T+ +K + Sbjct: 204 ITPSEAISLSAKILTDHLSIFVNLTDEAKNTD----------VMVEKEETHKEKMLE--- 250 Query: 233 LNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 + I++L+L+ R+YNCLKRA I+T+ +L +KTE D+M++ Sbjct: 251 ---MTIEELDLSVRSYNCLKRAGINTVQELTNKTEADMMKV 288
>RPOA_GEOKA (Q5L3R2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 78.2 bits (191), Expect = 2e-14 Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 4/162 (2%) Frame = -1 Query: 584 KRDRGY---QTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIWTNG 417 KR RGY + R++ G PID+++ PV V+Y + + G ++ L +++WT+G Sbjct: 143 KRGRGYVPAEANKREDQPIGVIPIDSIYTPVSRVSYQVENTRVGQVTDYDKLTIDVWTDG 202 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 S+ PKEA+ ++ L + F+ +E + E + + ++K Sbjct: 203 SIGPKEAISLGAKILTEHLNIFVGLTDEAQNAEI---------------MVEKEDDQKEK 247 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 L + I++L+L+ R+YNCLKRA I+T+ +L KTEED+M++ Sbjct: 248 VLE-MTIEELDLSVRSYNCLKRAGINTVQELTQKTEEDMMKV 288
>RPOA_SYNPX (Q7U4H7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 78.2 bits (191), Expect = 2e-14 Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 8/187 (4%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYP---IDAVFMPVRNVNYSI--FSCGNGNEKHEILFLE 432 ++ ++R GY+ R + + IDAVFMPV VN++I + G E L +E Sbjct: 139 EVHVERGVGYRPVDRHSEDTSAIDLLQIDAVFMPVIRVNFTIDETAVAEGGSARERLRME 198 Query: 431 IWTNGSLTPKEALYEASRNLIDLFLPFLHA---EEEGTSFEENKNRFTPPLFTFQKRLTN 261 I T+GS+TP +AL +++ LI+LF P EE G E + P Sbjct: 199 IVTDGSITPDDALAQSANYLIELFQPLATVTLVEEPGIEPEPSAEAQIP----------- 247 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 +++L L+ R YNCLKRA ++++ DL+ + EDL+ I +F + Sbjct: 248 --------------LEELNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADE 293 Query: 80 IWDTLEK 60 + + LE+ Sbjct: 294 VIEALER 300
>RPOA_GEOSL (Q749B3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 340 Score = 77.4 bits (189), Expect = 3e-14 Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 5/182 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEI 429 ++ +K +GY R + G+ PIDA+F P+R VN+++ + G ++ L LE+ Sbjct: 144 EMVVKVGKGYVPADRNRDEKAPVGTIPIDALFSPIRKVNFTVSNARVGQMTDYDKLTLEV 203 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGT-SFEENKNRFTPPLFTFQKRLTNLKK 252 WTNGS+ P++A+ A++ L + F++ +EE S E P+ NL + Sbjct: 204 WTNGSVIPEDAVAFAAKILKEQLSIFINFDEEAEPSGEAEVGEGESPINE------NLYR 257 Query: 251 NKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWD 72 + +D+LEL+ R+ NCLK A I + +L+S+TE ++++ +F + I D Sbjct: 258 S----------VDELELSVRSANCLKNAGIKLIGELVSRTEAEMLKTQNFGRKSLNEIKD 307 Query: 71 TL 66 L Sbjct: 308 IL 309
>RPOA_STAHJ (Q4L888) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 77.0 bits (188), Expect = 4e-14 Identities = 51/181 (28%), Positives = 96/181 (53%), Gaps = 4/181 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIW 426 L + RGY + N D G P+D+++ PV VNY++ + G + L L++W Sbjct: 140 LVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNGS+TP+E++ A++ L + F+ +E + E + ++++ Sbjct: 200 TNGSITPQESVSLAAKILTEHLNIFVGLTDEAQNAEI---------------MIEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+++ +L K+E D+M++ + + + + L Sbjct: 245 KEKVLE-MSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKL 303 Query: 65 E 63 E Sbjct: 304 E 304
>RPOA_BACHD (O50634) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 77.0 bits (188), Expect = 4e-14 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 5/180 (2%) Frame = -1 Query: 584 KRDRGYQTELRKNYQD----GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIWTN 420 KR RGY N D G PID+++ PV VNY + + G ++ L L++WT+ Sbjct: 143 KRGRGY-VPAEGNKSDELAIGVIPIDSIYTPVSRVNYQVENTRVGQVTNYDKLTLDVWTD 201 Query: 419 GSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKG 240 GS+ P+EA+ ++ L + F+ ++ + E + ++++K Sbjct: 202 GSIRPEEAVSLGAKILTEHLNIFVGLTDQAQNAEI---------------MVEKEEDQKE 246 Query: 239 IPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEK 60 L + I++L+L+ R+YNCLKRA I+T+ +L KTEED+M++ R RK + + EK Sbjct: 247 KVLE-MTIEELDLSVRSYNCLKRAGINTVQELTQKTEEDMMKV---RNLGRKSLEEVQEK 302
>RPOA_STAES (Q8CRI4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 76.6 bits (187), Expect = 5e-14 Identities = 50/181 (27%), Positives = 96/181 (53%), Gaps = 4/181 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIW 426 L + RGY + N D G P+D+++ PV VNY++ + G + L L++W Sbjct: 140 LVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNGS+TP+E++ A++ + + F+ +E + E + ++++ Sbjct: 200 TNGSITPQESVSLAAKIMTEHLNIFVSLTDEAQNAEI---------------MIEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+++ +L K+E D+M++ + + + + L Sbjct: 245 KEKVLE-MSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKL 303 Query: 65 E 63 E Sbjct: 304 E 304
>RPOA_STAEQ (Q5HM25) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 76.6 bits (187), Expect = 5e-14 Identities = 50/181 (27%), Positives = 96/181 (53%), Gaps = 4/181 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIW 426 L + RGY + N D G P+D+++ PV VNY++ + G + L L++W Sbjct: 140 LVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNGS+TP+E++ A++ + + F+ +E + E + ++++ Sbjct: 200 TNGSITPQESVSLAAKIMTEHLNIFVSLTDEAQNAEI---------------MIEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+++ +L K+E D+M++ + + + + L Sbjct: 245 KEKVLE-MSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKL 303 Query: 65 E 63 E Sbjct: 304 E 304
>RPOA_STAAW (P66707) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 76.3 bits (186), Expect = 6e-14 Identities = 50/181 (27%), Positives = 96/181 (53%), Gaps = 4/181 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIW 426 L + RGY + N D G P+D+++ PV VNY++ + G + L L++W Sbjct: 140 LVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNGS+TP+E++ A++ + + F+ +E + E + ++++ Sbjct: 200 TNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEI---------------MIEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+++ +L K+E D+M++ + + + + L Sbjct: 245 KEKVLE-MSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKL 303 Query: 65 E 63 E Sbjct: 304 E 304
>RPOA_STAAS (Q6G797) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 76.3 bits (186), Expect = 6e-14 Identities = 50/181 (27%), Positives = 96/181 (53%), Gaps = 4/181 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIW 426 L + RGY + N D G P+D+++ PV VNY++ + G + L L++W Sbjct: 140 LVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNGS+TP+E++ A++ + + F+ +E + E + ++++ Sbjct: 200 TNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEI---------------MIEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+++ +L K+E D+M++ + + + + L Sbjct: 245 KEKVLE-MSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKL 303 Query: 65 E 63 E Sbjct: 304 E 304
>RPOA_STAAR (Q6GEK9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 76.3 bits (186), Expect = 6e-14 Identities = 50/181 (27%), Positives = 96/181 (53%), Gaps = 4/181 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIW 426 L + RGY + N D G P+D+++ PV VNY++ + G + L L++W Sbjct: 140 LVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNGS+TP+E++ A++ + + F+ +E + E + ++++ Sbjct: 200 TNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEI---------------MIEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+++ +L K+E D+M++ + + + + L Sbjct: 245 KEKVLE-MSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKL 303 Query: 65 E 63 E Sbjct: 304 E 304
>RPOA_STAAN (P66706) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 76.3 bits (186), Expect = 6e-14 Identities = 50/181 (27%), Positives = 96/181 (53%), Gaps = 4/181 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIW 426 L + RGY + N D G P+D+++ PV VNY++ + G + L L++W Sbjct: 140 LVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNGS+TP+E++ A++ + + F+ +E + E + ++++ Sbjct: 200 TNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEI---------------MIEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+++ +L K+E D+M++ + + + + L Sbjct: 245 KEKVLE-MSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKL 303 Query: 65 E 63 E Sbjct: 304 E 304
>RPOA_STAAM (P66705) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 76.3 bits (186), Expect = 6e-14 Identities = 50/181 (27%), Positives = 96/181 (53%), Gaps = 4/181 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIW 426 L + RGY + N D G P+D+++ PV VNY++ + G + L L++W Sbjct: 140 LVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNGS+TP+E++ A++ + + F+ +E + E + ++++ Sbjct: 200 TNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEI---------------MIEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+++ +L K+E D+M++ + + + + L Sbjct: 245 KEKVLE-MSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKL 303 Query: 65 E 63 E Sbjct: 304 E 304
>RPOA_STAAC (Q5HDY4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 76.3 bits (186), Expect = 6e-14 Identities = 50/181 (27%), Positives = 96/181 (53%), Gaps = 4/181 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIW 426 L + RGY + N D G P+D+++ PV VNY++ + G + L L++W Sbjct: 140 LVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNGS+TP+E++ A++ + + F+ +E + E + ++++ Sbjct: 200 TNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEI---------------MIEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+++ +L K+E D+M++ + + + + L Sbjct: 245 KEKVLE-MSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKL 303 Query: 65 E 63 E Sbjct: 304 E 304
>RPOA_ENTFA (Q839D9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 76.3 bits (186), Expect = 6e-14 Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 4/165 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIW 426 L +K RGY +D G P+D+++ PV VNY + + G + + L +EIW Sbjct: 138 LTVKPGRGYVQADENKKEDMPIGVLPVDSIYTPVLRVNYQVENTRVGRRDDFDKLTMEIW 197 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 T+GS+ P+EAL A++ + + F++ +E + E +K T +K Sbjct: 198 TDGSIIPQEALSLAAKIMTEHLDIFVNLTDEAKNAE----------IMVEKEETQKEKML 247 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 + + I++L+L+ R+YNCLKRA I+T+ +L +K+E +++++ Sbjct: 248 E------MTIEELDLSVRSYNCLKRAGINTVQELTNKSEPEMIKV 286
>RPOA_BIFLO (Q8G3Z3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 331 Score = 76.3 bits (186), Expect = 6e-14 Identities = 57/198 (28%), Positives = 101/198 (51%), Gaps = 6/198 (3%) Frame = -1 Query: 596 DLQIKRDRGY---QTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 + ++R RGY Q + N + G P+D+++ PV V+Y + + + L L++ Sbjct: 137 EFTVERGRGYVPAQMNKQDNDEIGRIPVDSIYSPVLKVSYKVEATRVEQRTDFDKLILDV 196 Query: 428 WTNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 T +++P++A+ A L++LF L+A+ EG P ++ TN Sbjct: 197 ETKPAISPRDAVASAGSTLVELFGLCRELNAQAEGVE--------VGPAPVAEE--TN-- 244 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 P + I+ L LT R+YNCLKR IHT+ +L+S TE+DL+ I +F M+ + Sbjct: 245 ------PEMAVPIEDLNLTQRSYNCLKREGIHTIGELVSHTEQDLLDIRNFGMKSIDEVK 298 Query: 74 DTLEKHLPIDLLKNKLSF 21 + L+ L + L + ++F Sbjct: 299 EKLQT-LGLSLKSSPMAF 315
>RPOA_STRMU (Q8DS36) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 75.9 bits (185), Expect = 8e-14 Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 8/169 (4%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD----GSYPIDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEI 429 + + +RGY KN +D G+ ID+++ PV+ VNY + G N+ + L +EI Sbjct: 138 MTVATNRGY-VPAEKNKRDDAPVGTLAIDSIYTPVKKVNYQVEPARVGSNDNFDKLTIEI 196 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 TNG++ P++AL ++R LI E+ N FT T + T++ K Sbjct: 197 MTNGTIIPEDALGLSARVLI-----------------EHLNLFTD--LTEVAKATDVMKE 237 Query: 248 KKGIPLNCIF---IDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 + + + I++L+L+ R+YNCLKRA I+T+ DL K+E ++M++ Sbjct: 238 TEQVSDEKVLDRTIEELDLSVRSYNCLKRAGINTVYDLTEKSESEMMKV 286
>RPOA_SILPO (Q5LW32) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 338 Score = 75.5 bits (184), Expect = 1e-13 Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 10/195 (5%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 +L + +GY + + +D G PIDA++ PV+ V Y + G ++ L ++I Sbjct: 145 ELTVNTGKGYVSADKNRPEDAPIGLIPIDAIYSPVKKVAYDVQPTREGQVLDYDKLTMKI 204 Query: 428 WTNGSLTPKEALYEASRNLID---LFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNL 258 T+GS+TP +A+ A+R L D +F+ F E G +++ F P L L Sbjct: 205 ETDGSITPDDAVAFAARILQDQLSIFVNFDEPESAGRQDDDDGLEFNPLL---------L 255 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF---RMEDR 87 KK +D+LEL+ R+ NCLK NI + DL+ KTE +++R +F + + Sbjct: 256 KK-----------VDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEI 304 Query: 86 KHIWDTLEKHLPIDL 42 K + + HL +D+ Sbjct: 305 KEVLSGMGLHLGMDV 319
>RPOA_MYCPA (Q73S43) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 347 Score = 75.1 bits (183), Expect = 1e-13 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 6/171 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 +L ++R RGY ++ G P+D+++ PV V Y + + + L L++ Sbjct: 137 ELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILDV 196 Query: 428 WTNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 T S+TP++AL A + L++LF L+ E EG + Sbjct: 197 ETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSP------------------ 238 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 I + ID L+LT R+YNCLKR +HT+ +L+S+TE DL+ I +F Sbjct: 239 AEADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNF 289
>RPOA_MYCLE (Q9X798) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 347 Score = 75.1 bits (183), Expect = 1e-13 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 6/171 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNY---QDGSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 +L ++R RGY ++ + G P+D+++ PV V Y + + + L L++ Sbjct: 137 ELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILDV 196 Query: 428 WTNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 T S+TP++AL A + L++LF L+ E EG + Sbjct: 197 ETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSP------------------ 238 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 I + ID L+LT R+YNCLKR +HT+ +L+S+TE DL+ I +F Sbjct: 239 AEADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNF 289
>RPOA_EMIHU (Q4G347) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 309 Score = 74.7 bits (182), Expect = 2e-13 Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 1/170 (0%) Frame = -1 Query: 548 NYQDGSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEIWTNGSLTPKEALYEASRNL 372 N G +DAVF P++ VN+ + + + + E L +EI TNGS+ P EAL A+ L Sbjct: 155 NNPRGFLAVDAVFTPIKKVNFFVETSSSKERLEKERLIIEIETNGSILPLEALNLAAERL 214 Query: 371 IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSR 192 LF A+ T T + + + + + + I++LEL+ R Sbjct: 215 SSLFKLVNSAD------------LTAEFPTEVENIVQVSQTD----VTGVLIEELELSVR 258 Query: 191 TYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLEKHLPIDL 42 YNCLKRA IHTL +LL ++E+L+ +F + + + L + + L Sbjct: 259 AYNCLKRAQIHTLGELLKYSKENLLEFKNFGQKSANEVCENLHERFNLTL 308
>RPOA_STAS1 (Q49ZE2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 74.7 bits (182), Expect = 2e-13 Identities = 50/181 (27%), Positives = 95/181 (52%), Gaps = 4/181 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIW 426 L + RGY + D G P+D+++ PV VNY++ + G + L L++W Sbjct: 140 LVANKGRGYALAEQNKTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVW 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNGS+TP+E++ A++ L + F+ +E + E + ++++ Sbjct: 200 TNGSITPQESVSLAAKILTEHLNIFVGLTDEAQNAEI---------------MIEKEEDQ 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 K L + I++L+L+ R+YNCLKRA I+++ +L K+E D+M++ + + + + L Sbjct: 245 KEKVLE-MSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKL 303 Query: 65 E 63 E Sbjct: 304 E 304
>RPOA_PELCD (Q3A6M0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 338 Score = 74.3 bits (181), Expect = 2e-13 Identities = 50/182 (27%), Positives = 97/182 (53%), Gaps = 5/182 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD----GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLE 432 D+ + +GY +N D G+ PID++F PV+ VN+++ + G ++ L LE Sbjct: 144 DMVVAMGKGY-VPAERNRDDKAPVGTIPIDSLFSPVKKVNFTVTNARVGQITDYDKLILE 202 Query: 431 IWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKK 252 + T+GS+ P + + A++ L + F++ +EE + E ++ + +K NL + Sbjct: 203 VLTDGSVRPDDGVAYAAKILKEQLQIFINFDEETETVVEEESEES------RKINENLYR 256 Query: 251 NKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWD 72 + +++LEL+ R+ NCLK ANIH + DL+ ++E ++++ +F + I D Sbjct: 257 S----------VEELELSVRSANCLKNANIHLIGDLVQRSEAEMLKTQNFGRKSLNEIKD 306 Query: 71 TL 66 L Sbjct: 307 IL 308
>RPOA_STRA5 (Q8E2B1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 74.3 bits (181), Expect = 2e-13 Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 4/165 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEIW 426 + + ++RGY D G+ +D+++ PV+ VNY + G N+ + L +EI Sbjct: 138 MTVAKNRGYVPAEGNKKDDAPVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTIEIM 197 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNG++ P++AL ++R LI+ F E + E K T ++ Sbjct: 198 TNGTIIPEDALGLSARVLIEHLNLFTDLTEVAKATEVMKE-------------TEKVNDE 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 K + I++L+L+ R+YNCLKRA I+T+ DL KTE ++M++ Sbjct: 245 KVLDRT---IEELDLSVRSYNCLKRAGINTVFDLTEKTEPEMMKV 286
>RPOA_STRA3 (Q8CX32) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 74.3 bits (181), Expect = 2e-13 Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 4/165 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEIW 426 + + ++RGY D G+ +D+++ PV+ VNY + G N+ + L +EI Sbjct: 138 MTVAKNRGYVPAEGNKKDDAPVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTIEIM 197 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNG++ P++AL ++R LI+ F E + E K T ++ Sbjct: 198 TNGTIIPEDALGLSARVLIEHLNLFTDLTEVAKATEVMKE-------------TEKVNDE 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 K + I++L+L+ R+YNCLKRA I+T+ DL KTE ++M++ Sbjct: 245 KVLDRT---IEELDLSVRSYNCLKRAGINTVFDLTEKTEPEMMKV 286
>RPOA_STRA1 (Q3K3U4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 74.3 bits (181), Expect = 2e-13 Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 4/165 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEIW 426 + + ++RGY D G+ +D+++ PV+ VNY + G N+ + L +EI Sbjct: 138 MTVAKNRGYVPAEGNKKDDVPVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTIEIM 197 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNG++ P++AL ++R LI+ F E + E K T ++ Sbjct: 198 TNGTIIPEDALGLSARVLIEHLNLFTDLTEVAKATEVMKE-------------TEKVNDE 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 K + I++L+L+ R+YNCLKRA I+T+ DL KTE ++M++ Sbjct: 245 KVLDRT---IEELDLSVRSYNCLKRAGINTVFDLTEKTEPEMMKV 286
>RPOA_BACTN (Q8A4A2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 73.9 bits (180), Expect = 3e-13 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 4/182 (2%) Frame = -1 Query: 596 DLQIKRDRGY--QTELRKNYQDGSY-PIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 D+ I + RGY E R+ D + PID+++ P+RNV Y++ + +E L LEI Sbjct: 143 DITINKGRGYVPADENREYCTDVNVIPIDSIYTPIRNVKYAVENFRVEQKTDYEKLVLEI 202 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 T+GS+ PKEAL EA++ LI F+ F +E + E N + L K Sbjct: 203 STDGSIHPKEALKEAAKILIYHFMLF---SDEKITLESNDTDGNEEFDEEVLHMRQLLKT 259 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 K + ++L+ R NCLK A++ TL DL+ + DL++ +F + + D Sbjct: 260 K---------LVDMDLSVRALNCLKAADVETLGDLVQFNKTDLLKFRNFGKKSLTELDDL 310 Query: 68 LE 63 LE Sbjct: 311 LE 312
>RPOA_RHOBA (Q7UIC5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 331 Score = 73.9 bits (180), Expect = 3e-13 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 4/169 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 ++ ++ RGY + D G PIDAVF P+ V Y + + G + ++ L LEI Sbjct: 146 EMVVETGRGYVPSTEHSSVDHEIGIIPIDAVFSPIVRVRYEVEATRVGQKTNYDRLNLEI 205 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 WT+G++ P+ AL EA++ L PF+ E G P +F+ + + Sbjct: 206 WTDGTINPEMALTEAAKILRKHLNPFVQYRELG-----------PSIFSAARGGAGSPEA 254 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 + LN D L L+ R NCL+ NI T+ DL+ +TE+ L+ + +F Sbjct: 255 QLEAKLNMTLAD-LRLSVRANNCLESENIMTVRDLVQRTEDSLLEVRNF 302
>RPOA_CHLTE (Q8KAJ8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 73.6 bits (179), Expect = 4e-13 Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 8/187 (4%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGS----YPIDAVFMPVRNVNYSIFSCGNGNEK-HEILFLE 432 D+ I R RGY +N DG ID+++ P++NV ++ + G + +E + L+ Sbjct: 142 DIYIGRGRGY-VPAEENRSDGMPIGFIAIDSIYTPIKNVKLTVENTRVGQKTDYEKMILD 200 Query: 431 IWTNGSLTPKEALYEASRNLID---LFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTN 261 + T+GS+TP +A+ A + + D F F EEE F E + + F ++L Sbjct: 201 VETDGSITPDDAISLAGKIINDHITFFANFSPTEEE---FSEEEYKQLDDEFESMRKLLQ 257 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 K I+ L+L+ R++NCL+ A I +L DL+S+ EE+L+ +F + Sbjct: 258 TK------------IEDLDLSVRSHNCLRLAEIDSLGDLVSRREEELLNYKNFGKKSLTE 305 Query: 80 IWDTLEK 60 + + LEK Sbjct: 306 LKEQLEK 312
>RPOA_LISMO (P66699) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 73.6 bits (179), Expect = 4e-13 Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 4/165 (2%) Frame = -1 Query: 593 LQIKRDRGY---QTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEIW 426 L R RGY R+N G P+D++F PV VNY + + G ++ L ++ Sbjct: 140 LNATRGRGYTPADQNKRENMPIGVLPVDSIFSPVIRVNYQVENTRVGQSTNYDKLTFDVL 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 T+GS++P+EA+ ++ L + F++ +E E +K ++ +K Sbjct: 200 TDGSISPEEAVSLGAKILSEHLSIFVNLTDEAQKAE----------IMIEKEESHKEKVL 249 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 + + I++L+L+ R+YNCLKRA I+T+ +L K+E+D+M++ Sbjct: 250 E------MTIEELDLSVRSYNCLKRAGINTVQELADKSEDDMMKV 288
>RPOA_LISMF (Q71WH2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 73.6 bits (179), Expect = 4e-13 Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 4/165 (2%) Frame = -1 Query: 593 LQIKRDRGY---QTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEIW 426 L R RGY R+N G P+D++F PV VNY + + G ++ L ++ Sbjct: 140 LNATRGRGYTPADQNKRENMPIGVLPVDSIFSPVIRVNYQVENTRVGQSTNYDKLTFDVL 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 T+GS++P+EA+ ++ L + F++ +E E +K ++ +K Sbjct: 200 TDGSISPEEAVSLGAKILSEHLSIFVNLTDEAQKAE----------IMIEKEESHKEKVL 249 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 + + I++L+L+ R+YNCLKRA I+T+ +L K+E+D+M++ Sbjct: 250 E------MTIEELDLSVRSYNCLKRAGINTVQELADKSEDDMMKV 288
>RPOA_LISIN (P66700) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 73.6 bits (179), Expect = 4e-13 Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 4/165 (2%) Frame = -1 Query: 593 LQIKRDRGY---QTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEIW 426 L R RGY R+N G P+D++F PV VNY + + G ++ L ++ Sbjct: 140 LNATRGRGYTPADQNKRENMPIGVLPVDSIFSPVIRVNYQVENTRVGQSTNYDKLTFDVL 199 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 T+GS++P+EA+ ++ L + F++ +E E +K ++ +K Sbjct: 200 TDGSISPEEAVSLGAKILSEHLSIFVNLTDEAQKAE----------IMIEKEESHKEKVL 249 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 + + I++L+L+ R+YNCLKRA I+T+ +L K+E+D+M++ Sbjct: 250 E------MTIEELDLSVRSYNCLKRAGINTVQELADKSEDDMMKV 288
>RPOA_RHOS4 (Q3J5P8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 338 Score = 73.2 bits (178), Expect = 5e-13 Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 10/195 (5%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 +L + +GY + +D G PIDA++ PV+ V+Y + G ++ L + I Sbjct: 145 ELTVNTGKGYVAADKNRPEDAPIGLIPIDAIYSPVKKVSYEVTPTREGQVLDYDKLTMRI 204 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE---ENKNRFTPPLFTFQKRLTNL 258 T+G LTP +A+ A+R L D F++ EE ++ E+ F P L L Sbjct: 205 ETDGGLTPDDAVAYAARILQDQLSIFVNFEEPESATRHDVEDGLEFNPLL---------L 255 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF---RMEDR 87 KK +D+LEL+ R+ NCLK NI + DL+ KTE +++R +F + + Sbjct: 256 KK-----------VDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEI 304 Query: 86 KHIWDTLEKHLPIDL 42 K + + HL +D+ Sbjct: 305 KEVLSGMGLHLGMDV 319
>RPOA_BACFR (Q64NN5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 73.2 bits (178), Expect = 5e-13 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 4/182 (2%) Frame = -1 Query: 596 DLQIKRDRGY--QTELRKNYQDGSY-PIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 D+ I + RGY E R+ D + PID+++ P+RNV Y++ + +E L LEI Sbjct: 143 DITINKGRGYVPADENREYCTDVNVIPIDSIYTPIRNVKYAVENFRVEQKTDYEKLVLEI 202 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 T+GS+ PKEAL EA++ LI F+ F +E + E N + L K Sbjct: 203 TTDGSIHPKEALKEAAKILIYHFMLF---SDEKITLESNDVDGNEEFDEEVLHMRQLLKT 259 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 K + ++L+ R NCLK A++ TL DL+ + DL++ +F + + D Sbjct: 260 K---------LVDMDLSVRALNCLKAADVETLGDLVQFNKTDLLKFRNFGKKSLTELDDL 310 Query: 68 LE 63 LE Sbjct: 311 LE 312
>RPOA_BACFN (Q5L8D6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 73.2 bits (178), Expect = 5e-13 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 4/182 (2%) Frame = -1 Query: 596 DLQIKRDRGY--QTELRKNYQDGSY-PIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 D+ I + RGY E R+ D + PID+++ P+RNV Y++ + +E L LEI Sbjct: 143 DITINKGRGYVPADENREYCTDVNVIPIDSIYTPIRNVKYAVENFRVEQKTDYEKLVLEI 202 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 T+GS+ PKEAL EA++ LI F+ F +E + E N + L K Sbjct: 203 TTDGSIHPKEALKEAAKILIYHFMLF---SDEKITLESNDVDGNEEFDEEVLHMRQLLKT 259 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 K + ++L+ R NCLK A++ TL DL+ + DL++ +F + + D Sbjct: 260 K---------LVDMDLSVRALNCLKAADVETLGDLVQFNKTDLLKFRNFGKKSLTELDDL 310 Query: 68 LE 63 LE Sbjct: 311 LE 312
>RPOA_STRP3 (Q8K8W9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 73.2 bits (178), Expect = 5e-13 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 4/165 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEIW 426 + + + RGY D G+ +D+++ PV+ VNY + G N+ + L +EI Sbjct: 138 MTVAKKRGYVPAEGNKKDDAPVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTIEIM 197 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNG++ P++AL ++R LI+ F E S E K T ++ Sbjct: 198 TNGTIIPEDALGLSARVLIEHLNLFTDLTEVAKSTEVMKE-------------TEKVNDE 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 K + I++L+L+ R+YNCLKRA I+T+ DL K+E ++M++ Sbjct: 245 KVLDRT---IEELDLSVRSYNCLKRAGINTVFDLTEKSEPEMMKV 286
>RPOA_BRUAB (Q57CT2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 337 Score = 73.2 bits (178), Expect = 5e-13 Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 10/195 (5%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 + + +GY R +D G P+D+++ PVR V+Y I + G ++ L L I Sbjct: 144 EFTVNTGKGYVPADRNRAEDAPIGLIPVDSLYSPVRKVSYKIENTREGQVLDYDKLTLNI 203 Query: 428 WTNGSLTPKEALYEASRNLID---LFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNL 258 TNGS+T ++A+ A+R L D +F+ F ++E + + F P L L Sbjct: 204 ETNGSVTGEDAVAYAARILQDQLSIFVNFEEPQKEAPQEQVAELAFNPAL---------L 254 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF---RMEDR 87 KK +D+LEL+ R+ NCLK NI + DL+ KTE +++R +F + + Sbjct: 255 KK-----------VDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEI 303 Query: 86 KHIWDTLEKHLPIDL 42 K + ++ HL +++ Sbjct: 304 KEVLASMGLHLGMEI 318
>RPOA_DEHSC (Q3ZZP6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 72.8 bits (177), Expect = 7e-13 Identities = 47/180 (26%), Positives = 93/180 (51%), Gaps = 2/180 (1%) Frame = -1 Query: 596 DLQIKRDRGYQT-ELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIWT 423 +L+++ RGY+ E +N G+ P+DA+F P+R VN++ G E E L LE+WT Sbjct: 138 ELEVELGRGYRPPESAENTPIGTIPVDAIFTPIRKVNFTTEPMHVGRETSLERLVLEVWT 197 Query: 422 NGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKK 243 +G++ P A+ ++ L+ F + + E ++ P +T + N+ Sbjct: 198 DGTVEPATAVSRSADILVKQFASLVSHSKVVAEIEASE----PVKYTIPEEKYNMP---- 249 Query: 242 GIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLE 63 I+QL+L+ R NCL+ A I T+ +++++ ++L+ + +F ++ + D L+ Sbjct: 250 --------IEQLDLSVRAVNCLRHAGITTVGEVINRGTKELLTLRNFGLKSLTELEDRLK 301
>RPOA_BRUSU (Q8G094) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 337 Score = 72.8 bits (177), Expect = 7e-13 Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 10/195 (5%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 + + +GY R +D G P+D+++ PVR V+Y I + G ++ L L I Sbjct: 144 EFTVNTGKGYVPADRNRAEDAPIGLIPVDSLYSPVRKVSYKIENTREGQVLDYDKLTLNI 203 Query: 428 WTNGSLTPKEALYEASRNLID---LFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNL 258 TNGS+T ++A+ A+R L D +F+ F ++E + + F P L L Sbjct: 204 ETNGSVTGEDAVAYAARILQDQLSIFVNFEEPQKEAPQEQVAELAFNPAL---------L 254 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF---RMEDR 87 KK +D+LEL+ R+ NCLK NI + DL+ KTE +++R +F + + Sbjct: 255 KK-----------VDELELSVRSANCLKTDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEI 303 Query: 86 KHIWDTLEKHLPIDL 42 K + ++ HL +++ Sbjct: 304 KEVLASMGLHLGMEI 318
>RPOA_MYCTU (P66701) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 347 Score = 72.4 bits (176), Expect = 9e-13 Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 6/171 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 +L ++R RGY ++ G P+D+++ PV V Y + + + L L++ Sbjct: 137 ELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILDV 196 Query: 428 WTNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 T S++P++AL A + L++LF L+ E EG + Sbjct: 197 ETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSP------------------ 238 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 I + ID L+LT R+YNCLKR +HT+ +L+++TE DL+ I +F Sbjct: 239 AEADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNF 289
>RPOA_MYCBO (P66702) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 347 Score = 72.4 bits (176), Expect = 9e-13 Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 6/171 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 +L ++R RGY ++ G P+D+++ PV V Y + + + L L++ Sbjct: 137 ELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILDV 196 Query: 428 WTNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 T S++P++AL A + L++LF L+ E EG + Sbjct: 197 ETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSP------------------ 238 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 I + ID L+LT R+YNCLKR +HT+ +L+++TE DL+ I +F Sbjct: 239 AEADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNF 289
>RPOA_CHRVO (Q7NQH7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 327 Score = 72.4 bits (176), Expect = 9e-13 Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 6/183 (3%) Frame = -1 Query: 596 DLQIKRDRGYQ-TELRKNYQD----GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFL 435 ++++++ RGYQ R ++ D G+ +DA F PVR V++++ S + L L Sbjct: 142 EVKVEKGRGYQPVSARTSHDDNRSIGTIQLDASFSPVRRVSFAVESARVEQRTDLDRLVL 201 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 +I TNG + P++A+ A+R L+D F A+ +GT+ EE + PP+ Sbjct: 202 DIETNGVIEPEQAVRNAARILMDQLSIF--ADLQGTAVEEVVEK-APPID---------- 248 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + I Sbjct: 249 ------PILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTETELLKTPNLGRKSLNEIK 302 Query: 74 DTL 66 + L Sbjct: 303 EVL 305
>RPOA_THEFY (Q47LM1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 338 Score = 72.4 bits (176), Expect = 9e-13 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 6/171 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNY---QDGSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 ++ ++R RGY + + + G PID+++ PV V Y + + + L L++ Sbjct: 137 EMTVERGRGYVSAAQNKQPGQEIGRIPIDSIYSPVMRVTYKVEATRVEQRTDFDRLILDV 196 Query: 428 WTNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 WT ++ P++A+ A + L++LF L+ + EG P T +L Sbjct: 197 WTKPAIRPRDAVASAGKTLVELFGLARELNVDAEGIDMG--------PSPTDAALAADL- 247 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 + I+ L LT R+YNCLKR IHT+ +L+++TE+DL+ I +F Sbjct: 248 ---------ALPIEDLNLTVRSYNCLKREGIHTVGELVARTEQDLLDIRNF 289
>RPOA_DESDG (Q30Z68) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 348 Score = 72.4 bits (176), Expect = 9e-13 Identities = 50/170 (29%), Positives = 95/170 (55%), Gaps = 5/170 (2%) Frame = -1 Query: 596 DLQIKRDRGY-QTELRKNYQD--GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEI 429 +L+++ +GY ++ + D G +DA F PVR V Y++ G ++ L LE+ Sbjct: 154 ELEVRMGKGYVPADMHEGLSDEIGLIALDASFSPVRKVAYTVEQARVGQMTNYDKLILEV 213 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 WT+GS++P++A+ +++ + D F++ +E S +EN+ R + +++ +N Sbjct: 214 WTDGSISPEDAIAYSAKIIKDQISVFINFDER-ISEQENEGRSSA---------SDVNEN 263 Query: 248 K-KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 KGI D+LEL+ R NCLK ANI + +L+ K+E ++++ +F Sbjct: 264 LFKGI-------DELELSVRATNCLKSANISLVGELVQKSEGEMLKTKNF 306
>RPOA_CAUCR (Q9A8S9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 338 Score = 72.4 bits (176), Expect = 9e-13 Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 8/193 (4%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 + + +GY R +D G +DA++ PV+ V Y + G ++ L LE+ Sbjct: 145 EFTVNNGKGYVPADRNRPEDAPIGLIAVDALYSPVKRVAYRVEPTRQGQSLDYDKLILEV 204 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEE-EGTSFEENKNRFTPPLFTFQKRLTNLKK 252 TNG++TP +A+ A+R L D F+ EE + S +E+K P F L LKK Sbjct: 205 ETNGAVTPVDAVAYAARILQDQLQIFITFEEPKAKSADESK-----PELPFNPAL--LKK 257 Query: 251 NKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF---RMEDRKH 81 +D+LEL+ R+ NCLK NI + DL+ KTE +++R +F + + K Sbjct: 258 -----------VDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKE 306 Query: 80 IWDTLEKHLPIDL 42 + + HL +D+ Sbjct: 307 VLAGMGLHLGMDV 319
>RPOA_STRT2 (Q5M2D9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 72.4 bits (176), Expect = 9e-13 Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 7/168 (4%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEIW 426 + + +RGY D G+ +D+++ PV+ VNY + G N+ + L +EI Sbjct: 138 MTVSTNRGYVPAEENKKDDAPVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTIEIV 197 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNG++ P++AL ++R LI E+ N FT T + T++ K Sbjct: 198 TNGTIIPEDALGLSARILI-----------------EHLNLFTD--LTDVAKATDVMKET 238 Query: 245 KGIPLNCIF---IDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 + + + I++L+L+ R+YNCLKRA I+T+ DL KTE ++M++ Sbjct: 239 EKVNDEKLLDRTIEELDLSVRSYNCLKRAGINTVHDLTEKTEPEMMKV 286
>RPOA_STRT1 (Q5LXT7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 72.4 bits (176), Expect = 9e-13 Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 7/168 (4%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEIW 426 + + +RGY D G+ +D+++ PV+ VNY + G N+ + L +EI Sbjct: 138 MTVSTNRGYVPAEENKKDDAPVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTIEIV 197 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNG++ P++AL ++R LI E+ N FT T + T++ K Sbjct: 198 TNGTIIPEDALGLSARILI-----------------EHLNLFTD--LTDVAKATDVMKET 238 Query: 245 KGIPLNCIF---IDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 + + + I++L+L+ R+YNCLKRA I+T+ DL KTE ++M++ Sbjct: 239 EKVNDEKLLDRTIEELDLSVRSYNCLKRAGINTVHDLTEKTEPEMMKV 286
>RPOA_STRPM (Q48VS3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 72.0 bits (175), Expect = 1e-12 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 4/165 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEIW 426 + + + RGY D G+ +D+++ PV+ VNY + G N+ + L +EI Sbjct: 138 MTVAKKRGYVPAEGNKKDDAPVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTIEIM 197 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNG++ P++AL ++R LI+ F E + E K T ++ Sbjct: 198 TNGTIIPEDALGLSARVLIEHLNLFTDLTEVAKATEVMKE-------------TEKVNDE 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 K + I++L+L+ R+YNCLKRA I+T+ DL K+E ++M++ Sbjct: 245 KVLDRT---IEELDLSVRSYNCLKRAGINTVFDLTEKSEPEMMKV 286
>RPOA_STRP8 (P66711) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 72.0 bits (175), Expect = 1e-12 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 4/165 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEIW 426 + + + RGY D G+ +D+++ PV+ VNY + G N+ + L +EI Sbjct: 138 MTVAKKRGYVPAEGNKKDDAPVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTIEIM 197 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNG++ P++AL ++R LI+ F E + E K T ++ Sbjct: 198 TNGTIIPEDALGLSARVLIEHLNLFTDLTEVAKATEVMKE-------------TEKVNDE 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 K + I++L+L+ R+YNCLKRA I+T+ DL K+E ++M++ Sbjct: 245 KVLDRT---IEELDLSVRSYNCLKRAGINTVFDLTEKSEPEMMKV 286
>RPOA_STRP6 (Q5XEA9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 72.0 bits (175), Expect = 1e-12 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 4/165 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEIW 426 + + + RGY D G+ +D+++ PV+ VNY + G N+ + L +EI Sbjct: 138 MTVAKKRGYVPAEGNKKDDAPVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTIEIM 197 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNG++ P++AL ++R LI+ F E + E K T ++ Sbjct: 198 TNGTIIPEDALGLSARVLIEHLNLFTDLTEVAKATEVMKE-------------TEKVNDE 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 K + I++L+L+ R+YNCLKRA I+T+ DL K+E ++M++ Sbjct: 245 KVLDRT---IEELDLSVRSYNCLKRAGINTVFDLTEKSEPEMMKV 286
>RPOA_STRP1 (P66710) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 72.0 bits (175), Expect = 1e-12 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 4/165 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEIW 426 + + + RGY D G+ +D+++ PV+ VNY + G N+ + L +EI Sbjct: 138 MTVAKKRGYVPAEGNKKDDAPVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTIEIM 197 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNG++ P++AL ++R LI+ F E + E K T ++ Sbjct: 198 TNGTIIPEDALGLSARVLIEHLNLFTDLTEVAKATEVMKE-------------TEKVNDE 244 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRI 111 K + I++L+L+ R+YNCLKRA I+T+ DL K+E ++M++ Sbjct: 245 KVLDRT---IEELDLSVRSYNCLKRAGINTVFDLTEKSEPEMMKV 286
>RPOA_GLUOX (Q5FU07) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 339 Score = 71.6 bits (174), Expect = 2e-12 Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 4/181 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEI 429 + + +GY +D G PIDA++ PVR V+Y I G ++ L L + Sbjct: 146 EFTVNMGKGYVAAAANRPEDAPIGLIPIDAIYSPVRRVSYKIEQTRVGQVTDYDKLLLTV 205 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 TNG++TP+++L A+R L D F++ +E E P F + L L+K Sbjct: 206 ETNGAVTPEDSLALAARILQDQLQLFINFDEPRPVQHEEPQDDLP----FNRNL--LRK- 258 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 +D+LEL+ R+ NCLK NI + DL+ K+E++++R +F + I + Sbjct: 259 ----------VDELELSVRSANCLKNDNIVYIGDLVQKSEQEMLRTPNFGRKSLNEIKEV 308 Query: 68 L 66 L Sbjct: 309 L 309
>RPOA_BORGA (Q661B8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 344 Score = 71.6 bits (174), Expect = 2e-12 Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 5/185 (2%) Frame = -1 Query: 596 DLQIKRDRGY-QTELRKNYQD--GSYPIDAVFMPVRNVNYSIFSCGNGNEK-HEILFLEI 429 + QI RGY +E Y + +D++F P+ V+YS+ G ++ L +EI Sbjct: 157 EFQINYGRGYVSSEQNSKYLEEVNVIALDSIFSPIEKVSYSVEDTRVGQRSDYDKLVMEI 216 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEE-GTSFEENKNRFTPPLFTFQKRLTNLKK 252 WT G ++ K+A+ +A+ + + P + E+ TSFE++K+ L ++ Sbjct: 217 WTTGVISAKDAIKKAASIIREFLFPLIDFEDNINTSFEKSKSE--------SSNLLDMS- 267 Query: 251 NKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWD 72 I++L+L+ R+ NCL + N+ TL +L+SK E+L + +F + + I + Sbjct: 268 -----------IEKLDLSVRSLNCLAKENVRTLGELISKNAEELSKARNFGKKSLEEIIE 316 Query: 71 TLEKH 57 L + Sbjct: 317 KLSSY 321
>RPOA_BDEBA (Q6MJ36) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 332 Score = 71.2 bits (173), Expect = 2e-12 Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 1/158 (0%) Frame = -1 Query: 536 GSYPIDAVFMPVRNVNYSIFSCGNGNEK-HEILFLEIWTNGSLTPKEALYEASRNLIDLF 360 G +DA++ P+R VNY++ + G ++ L LE+WT+GSL P+EA+ +S+ + + Sbjct: 159 GFIGVDALYSPIRKVNYNVSNARVGQRTDYDALTLEVWTDGSLKPEEAVALSSKIMKEQL 218 Query: 359 LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNC 180 FL +E EE + +P L NL ++ +D LEL+ R+ NC Sbjct: 219 QIFLTFDETMEPAEEARELGSPTLNE------NLFRS----------VDDLELSVRSANC 262 Query: 179 LKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 LK ANI + +L+ ++E ++++ +F + I + L Sbjct: 263 LKNANIRYIGELVVRSEAEMLKTKNFGRKSLNEIKEIL 300
>RPOA_DEHE1 (Q3Z953) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 71.2 bits (173), Expect = 2e-12 Identities = 46/180 (25%), Positives = 92/180 (51%), Gaps = 2/180 (1%) Frame = -1 Query: 596 DLQIKRDRGYQT-ELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIWT 423 +L+++ RGY+ E +N G+ P+DA+F P+R VN++ G E E L LE+WT Sbjct: 138 ELEVELGRGYRAPESTENTPIGTIPVDAIFTPIRKVNFTTEPMHVGRETSLERLVLEVWT 197 Query: 422 NGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKK 243 +G++ P A+ ++ L+ F + + E ++ P + + N+ Sbjct: 198 DGTIEPATAVSRSADILVKQFAALVSHNKVVAEVEASE----PVKYAIPEEKYNMP---- 249 Query: 242 GIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLE 63 I+QL+L+ R NCL+ A I T+ +++++ ++L+ + +F ++ + D L+ Sbjct: 250 --------IEQLDLSVRAVNCLRHAGITTVGEVINRGTKELLTLRNFGLKSLTELEDRLK 301
>RPOA_LEPIN (Q9XD09) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 325 Score = 70.9 bits (172), Expect = 3e-12 Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 4/196 (2%) Frame = -1 Query: 596 DLQIKRDRGY--QTELRKNYQD-GSYPIDAVFMPVRNVNYSIFSCGNGNEK-HEILFLEI 429 DL+I+R RGY E +K+ + G+ P+D++F PV+ V + + +E L LE+ Sbjct: 149 DLEIQRGRGYVPAEEKKKDIEVLGTIPVDSIFSPVQKVVFEVSETRVAQRSDYEKLTLEV 208 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 WT+GS++P +A+ +A++ L + F++ EEE EE + +K +L K+ Sbjct: 209 WTDGSVSPDDAVAQAAKILKEHLTVFINFEEE---LEEEDDELDE---ADEKLKASLSKH 262 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 +++LEL+ R+ N L+ I + DL+ ++EE+ M KH D Sbjct: 263 ----------VEELELSVRSLNVLRSLEIDFIGDLVKRSEEE--------MSKSKHYSDQ 304 Query: 68 LEKHLPIDLLKNKLSF 21 + L + L LSF Sbjct: 305 CLQELKVKLSTLGLSF 320
>RPOA_LEPIC (Q72NI8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 325 Score = 70.9 bits (172), Expect = 3e-12 Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 4/196 (2%) Frame = -1 Query: 596 DLQIKRDRGY--QTELRKNYQD-GSYPIDAVFMPVRNVNYSIFSCGNGNEK-HEILFLEI 429 DL+I+R RGY E +K+ + G+ P+D++F PV+ V + + +E L LE+ Sbjct: 149 DLEIQRGRGYVPAEEKKKDIEVLGTIPVDSIFSPVQKVVFEVSETRVAQRSDYEKLTLEV 208 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 WT+GS++P +A+ +A++ L + F++ EEE EE + +K +L K+ Sbjct: 209 WTDGSVSPDDAVAQAAKILKEHLTVFINFEEE---LEEEDDELDE---ADEKLKASLSKH 262 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 +++LEL+ R+ N L+ I + DL+ ++EE+ M KH D Sbjct: 263 ----------VEELELSVRSLNVLRSLEIDFIGDLVKRSEEE--------MSKSKHYSDQ 304 Query: 68 LEKHLPIDLLKNKLSF 21 + L + L LSF Sbjct: 305 CLQELKVKLSTLGLSF 320
>RPOA_BRUME (Q8YHL6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 337 Score = 70.9 bits (172), Expect = 3e-12 Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 7/172 (4%) Frame = -1 Query: 536 GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEIWTNGSLTPKEALYEASRNLID-- 366 G P+D+++ PVR V+Y I + G ++ L L I TNGS+T ++A+ A+R L D Sbjct: 167 GLIPVDSLYSPVRKVSYKIENTREGQVLDYDKLTLNIETNGSVTGEDAVAYAARILQDQL 226 Query: 365 -LFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRT 189 +F+ F ++E + + F P L LKK +D+LEL+ R+ Sbjct: 227 SIFVNFEEPQKEAPQEQVAELAFNPAL---------LKK-----------VDELELSVRS 266 Query: 188 YNCLKRANIHTLLDLLSKTEEDLMRIDSF---RMEDRKHIWDTLEKHLPIDL 42 NCLK NI + DL+ KTE +++R +F + + K + ++ HL +++ Sbjct: 267 ANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKEVLASMGLHLGMEI 318
>RPOA_THIDA (Q3SLM4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 326 Score = 70.5 bits (171), Expect = 4e-12 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 6/183 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD-----GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFL 435 +++I+ RGYQ + + GS +DA F PVR V Y++ S + L + Sbjct: 141 EIKIEAGRGYQPATARKVSEETRAVGSILVDASFSPVRRVAYAVESARVEQRTDLDRLVI 200 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 +I TNG + P+EA+ A+R L+ F A+ EGT E R Sbjct: 201 DIETNGVVEPEEAVRTAARILVSQLSVF--ADLEGTPAESESPR---------------- 242 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 + + PL +D LELT R+ NCLK NI+ + DL+ ++E +L+R + + I Sbjct: 243 -SPQVDPLLLRPVDDLELTVRSANCLKAENIYFIGDLIQRSETELLRTPNLGRKSLNEIK 301 Query: 74 DTL 66 D L Sbjct: 302 DVL 304
>RPOA_STRR6 (P66709) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 311 Score = 69.7 bits (169), Expect = 6e-12 Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 5/193 (2%) Frame = -1 Query: 593 LQIKRDRGY---QTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEIW 426 + + RGY + N G+ +D+++ PV VNY + G N+ + L LEI Sbjct: 138 MTVNSGRGYVPADENKKDNAPVGTLAVDSIYTPVTKVNYQVEPARVGSNDGFDKLTLEIL 197 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNG++ P++AL ++R L + F + E S E K T R Sbjct: 198 TNGTIIPEDALGLSARILTEHLDLFTNLTEIAKSTEVMKEADTESDDRILDRT------- 250 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 I++L+L+ R+YNCLKRA I+T+ DL K+E ++M++ R RK + + Sbjct: 251 ---------IEELDLSVRSYNCLKRAGINTVHDLTEKSEAEMMKV---RNLGRKSLEEVK 298 Query: 65 EKHLPIDL-LKNK 30 K + + L LK+K Sbjct: 299 LKLIDLGLGLKDK 311
>RPOA_STRPN (P66708) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 311 Score = 69.7 bits (169), Expect = 6e-12 Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 5/193 (2%) Frame = -1 Query: 593 LQIKRDRGY---QTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEIW 426 + + RGY + N G+ +D+++ PV VNY + G N+ + L LEI Sbjct: 138 MTVNSGRGYVPADENKKDNAPVGTLAVDSIYTPVTKVNYQVEPARVGSNDGFDKLTLEIL 197 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNG++ P++AL ++R L + F + E S E K T R Sbjct: 198 TNGTIIPEDALGLSARILTEHLDLFTNLTEIAKSTEVMKEADTESDDRILDRT------- 250 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 I++L+L+ R+YNCLKRA I+T+ DL K+E ++M++ R RK + + Sbjct: 251 ---------IEELDLSVRSYNCLKRAGINTVHDLTEKSEAEMMKV---RNLGRKSLEEVK 298 Query: 65 EKHLPIDL-LKNK 30 K + + L LK+K Sbjct: 299 LKLIDLGLGLKDK 311
>RPOA_NOCFA (Q5Z1K9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 352 Score = 69.3 bits (168), Expect = 8e-12 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 6/171 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 +L ++R RGY ++ G P+D+++ PV V Y + + + L L++ Sbjct: 137 ELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDRLILDV 196 Query: 428 WTNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 T S++ ++AL A + L++LF L+ E EG + + +F Sbjct: 197 ETKNSISARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE-ADHIASF-------- 247 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 G+P I+ L+LT R+YNCLKR +HT+ +L+++TE DL+ I +F Sbjct: 248 ----GLP-----IEDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNF 289
>RPOA_BORBU (O51455) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 345 Score = 69.3 bits (168), Expect = 8e-12 Identities = 49/182 (26%), Positives = 90/182 (49%), Gaps = 5/182 (2%) Frame = -1 Query: 596 DLQIKRDRGY-QTELRKNYQD--GSYPIDAVFMPVRNVNYSIFSCGNGNEK-HEILFLEI 429 + QI RGY +E Y + +D++F P+ V+YS+ G ++ L +EI Sbjct: 158 EFQINYGRGYVSSEQNSKYLEEVNVIALDSIFSPIEKVSYSVEDTRVGQRSDYDKLVMEI 217 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEE-GTSFEENKNRFTPPLFTFQKRLTNLKK 252 WT G ++ K+A+ +A+ + + P + E+ TSFE++K+ L ++ Sbjct: 218 WTTGVISAKDAIKKAASIVREFLFPLVDFEDNVNTSFEKSKSE--------SSNLLDMS- 268 Query: 251 NKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWD 72 I++L L+ R+ NCL + N+ TL +L+SK E+L + +F + + I + Sbjct: 269 -----------IEKLNLSVRSLNCLAKENVRTLGELISKNAEELSKARNFGKKSLEEIIE 317 Query: 71 TL 66 L Sbjct: 318 KL 319
>RPOA_NEIG1 (Q5F5V2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 69.3 bits (168), Expect = 8e-12 Identities = 53/185 (28%), Positives = 97/185 (52%), Gaps = 8/185 (4%) Frame = -1 Query: 596 DLQIKRDRGYQTELRK------NYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEI--L 441 ++++++ RGYQ+ + N Q G+ +DA F P+ V++ + ++ ++ L Sbjct: 142 EIKVEQGRGYQSVSGRQVVRDENRQIGAIQLDASFSPISRVSFEV-EPARVEQRTDLDKL 200 Query: 440 FLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTN 261 L+I T+GS+ P+EA+ A+R LID F A+ +GT EE + + +PP+ Sbjct: 201 VLDIETDGSIDPEEAVRSAARILIDQMSIF--ADLQGTPVEEVEEK-SPPID-------- 249 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 P+ +D LELT R+ NCLK +I+ + DL+ +TE +L++ + + Sbjct: 250 --------PVLLHPVDDLELTVRSANCLKAEDIYYIGDLIQRTETELLKTPNLGRKSLNE 301 Query: 80 IWDTL 66 I + L Sbjct: 302 IKEVL 306
>RPOA_EHRCJ (Q3YRN2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 372 Score = 69.3 bits (168), Expect = 8e-12 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 1/153 (0%) Frame = -1 Query: 521 DAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLH 345 +A++ P++ ++ + S G ++ L L + T+GS+ P EA+ A+R L D F PF++ Sbjct: 207 NALYSPIKKASFKVESSRIGQFTDYDRLVLSVETDGSILPDEAVALAARILQDQFQPFIN 266 Query: 344 AEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN 165 +E E +K T + L L+K +D+LEL+ R+YNCLK N Sbjct: 267 FDETD---EPHKKIDTKDALPYDSNL--LRK-----------VDELELSVRSYNCLKNDN 310 Query: 164 IHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 I + DL+ KTE D++R +F + I + L Sbjct: 311 ITYIGDLVQKTESDMLRTPNFGRKSLNEINELL 343
>RPOA_ZYMMO (Q5NQ40) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 353 Score = 68.9 bits (167), Expect = 1e-11 Identities = 49/181 (27%), Positives = 92/181 (50%), Gaps = 4/181 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 +L + +GY + D G P+DA++ PVR V Y + + G E ++ L L I Sbjct: 147 ELTVDTGKGYVAAVANRPADAPIGLIPVDALYSPVRQVAYKVENARVGQELDYDKLLLTI 206 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 T+G+++P++A+ ++R L D F+H ++ + + P + + + + N Sbjct: 207 ETDGTISPEDAIAYSARILQDQLQLFVHFDDGLAPPTSAIGQSSLPSSSSEAENSANQLN 266 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 + + +D+LEL+ R+ NCLK NI + DL+ KTE +++R +F + I + Sbjct: 267 RNLLKK----VDELELSVRSANCLKNDNIIYIGDLVQKTEAEMLRTPNFGRKSLNEIKEV 322 Query: 68 L 66 L Sbjct: 323 L 323
>RPOA_LEIXX (Q6AD21) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 332 Score = 68.9 bits (167), Expect = 1e-11 Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 4/181 (2%) Frame = -1 Query: 596 DLQIKRDRGYQT--ELRKNYQD-GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEI 429 +L I+R RGY + + R Y + G PID+++ PV V Y + + G + L +++ Sbjct: 137 ELTIERGRGYVSAQQNRNEYSEAGQIPIDSIYSPVLKVTYRVEATRAGERTDFDRLVVDV 196 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 T +++P++A+ A R L++LF N + + + + Sbjct: 197 ETKPAISPRDAIASAGRTLVELF-----------GLARELNSAAEGIEIGPAPVDQVLSS 245 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 + +P I+ L+L+ R+YNCLKR I+T+ +L+S +E LM I +F + + D Sbjct: 246 ELSMP-----IEDLDLSVRSYNCLKREGINTVSELVSLSETQLMNIRNFGQKSVDEVKDK 300 Query: 68 L 66 L Sbjct: 301 L 301
>RPOA_NEIMB (P66704) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 68.9 bits (167), Expect = 1e-11 Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 8/185 (4%) Frame = -1 Query: 596 DLQIKRDRGYQTELRK------NYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEI--L 441 ++++++ RGYQ+ + N Q G+ +DA F P+ V++ + ++ ++ L Sbjct: 142 EIKVEQGRGYQSVSGRQVVRDENRQIGAIQLDASFSPISRVSFEV-EPARVEQRTDLDKL 200 Query: 440 FLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTN 261 L+I T+GS+ P+EA+ A+R LID F A+ +GT EE + + PP+ Sbjct: 201 VLDIETDGSIDPEEAVRSAARILIDQMSIF--ADLQGTPVEEVEEK-APPID-------- 249 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 P+ +D LELT R+ NCLK +I+ + DL+ +TE +L++ + + Sbjct: 250 --------PVLLRPVDDLELTVRSANCLKAEDIYYIGDLIQRTETELLKTPNLGRKSLNE 301 Query: 80 IWDTL 66 I + L Sbjct: 302 IKEVL 306
>RPOA_NEIMA (P66703) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 68.9 bits (167), Expect = 1e-11 Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 8/185 (4%) Frame = -1 Query: 596 DLQIKRDRGYQTELRK------NYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEI--L 441 ++++++ RGYQ+ + N Q G+ +DA F P+ V++ + ++ ++ L Sbjct: 142 EIKVEQGRGYQSVSGRQVVRDENRQIGAIQLDASFSPISRVSFEV-EPARVEQRTDLDKL 200 Query: 440 FLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTN 261 L+I T+GS+ P+EA+ A+R LID F A+ +GT EE + + PP+ Sbjct: 201 VLDIETDGSIDPEEAVRSAARILIDQMSIF--ADLQGTPVEEVEEK-APPID-------- 249 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 P+ +D LELT R+ NCLK +I+ + DL+ +TE +L++ + + Sbjct: 250 --------PVLLRPVDDLELTVRSANCLKAEDIYYIGDLIQRTETELLKTPNLGRKSLNE 301 Query: 80 IWDTL 66 I + L Sbjct: 302 IKEVL 306
>RPOA_BORPE (P0A4E5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 68.9 bits (167), Expect = 1e-11 Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 7/183 (3%) Frame = -1 Query: 593 LQIKRDRGYQT-ELRKNYQDGSYPI-----DAVFMPVRNVNYSIFSCGNGNEKH-EILFL 435 +++++ RGY +R +D ++ I DA F PVR V+Y++ S + L L Sbjct: 141 VKVEKGRGYVPGNVRALSEDRTHTIGRIVLDASFSPVRRVSYAVESARVEQRTDLDKLVL 200 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 +I TNG ++P+EA+ +A+R L+D F E G ++E PP+ + Sbjct: 201 DIETNGVISPEEAVRQAARILMDQISVFAALEGAGDAYE-------PPV----------R 243 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 + P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + I Sbjct: 244 GTPQIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIK 303 Query: 74 DTL 66 + L Sbjct: 304 EVL 306
>RPOA_BORPA (P0A4E7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 68.9 bits (167), Expect = 1e-11 Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 7/183 (3%) Frame = -1 Query: 593 LQIKRDRGYQT-ELRKNYQDGSYPI-----DAVFMPVRNVNYSIFSCGNGNEKH-EILFL 435 +++++ RGY +R +D ++ I DA F PVR V+Y++ S + L L Sbjct: 141 VKVEKGRGYVPGNVRALSEDRTHTIGRIVLDASFSPVRRVSYAVESARVEQRTDLDKLVL 200 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 +I TNG ++P+EA+ +A+R L+D F E G ++E PP+ + Sbjct: 201 DIETNGVISPEEAVRQAARILMDQISVFAALEGAGDAYE-------PPV----------R 243 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 + P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + I Sbjct: 244 GTPQIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIK 303 Query: 74 DTL 66 + L Sbjct: 304 EVL 306
>RPOA_BORBR (P0A4E6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 68.9 bits (167), Expect = 1e-11 Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 7/183 (3%) Frame = -1 Query: 593 LQIKRDRGYQT-ELRKNYQDGSYPI-----DAVFMPVRNVNYSIFSCGNGNEKH-EILFL 435 +++++ RGY +R +D ++ I DA F PVR V+Y++ S + L L Sbjct: 141 VKVEKGRGYVPGNVRALSEDRTHTIGRIVLDASFSPVRRVSYAVESARVEQRTDLDKLVL 200 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 +I TNG ++P+EA+ +A+R L+D F E G ++E PP+ + Sbjct: 201 DIETNGVISPEEAVRQAARILMDQISVFAALEGAGDAYE-------PPV----------R 243 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 + P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + I Sbjct: 244 GTPQIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIK 303 Query: 74 DTL 66 + L Sbjct: 304 EVL 306
>RPOA_OCEIH (Q8ETV9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 314 Score = 68.9 bits (167), Expect = 1e-11 Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 4/178 (2%) Frame = -1 Query: 584 KRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIWTNG 417 +R RGY+ D G PID++F PV V Y + + G ++ L +++ T+G Sbjct: 143 ERGRGYRPAEENKNDDQPIGVIPIDSIFTPVSRVTYQVENTRVGQVANYDKLTMDVSTDG 202 Query: 416 SLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGI 237 S+ P+EA+ ++ + + F+ +E + E +K +K + Sbjct: 203 SIRPEEAVSLGAKIITEHLNIFVGLTDEAQNAE----------IMVEKEEDQKEKVME-- 250 Query: 236 PLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTLE 63 + I++L+L+ R+YNCLKRA I+T+ +L +K+EED+M++ + + + + LE Sbjct: 251 ----MTIEELDLSVRSYNCLKRAGINTVQELANKSEEDMMKVRNLGRKSLEEVKVKLE 304
>RPOA_CORJK (Q4JTC2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 337 Score = 68.9 bits (167), Expect = 1e-11 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEIWTN 420 ++ ++R RGY + + G P+D ++ PV V+Y + + + L L++ T Sbjct: 137 EMTVERGRGYVPAATASSEIGRIPVDQIYSPVLKVSYKVEATRVEQRTDFDKLILDVETK 196 Query: 419 GSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 S+T ++A+ A + L++LF L+ E EG + + Sbjct: 197 NSITARDAMASAGKTLVELFGLAQELNHEAEGIEIGPSP------------------QES 238 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 + I + I+ L + R+YNCLKR IHT+ +L ++TE DL+ I +F Sbjct: 239 EHIAAYSMPIEDLNFSVRSYNCLKREEIHTVGELAARTESDLLDIRNF 286
>RPOA_BARHE (Q9FDC7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 337 Score = 68.9 bits (167), Expect = 1e-11 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 7/181 (3%) Frame = -1 Query: 587 IKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEIWTN 420 + +GY R D G P+D+++ P+R V+Y + + G ++ L L + TN Sbjct: 147 VNTGKGYVPSDRNCIDDARIGLIPVDSLYSPIRKVSYKVENTREGQVLDYDKLTLTVETN 206 Query: 419 GSLTPKEALYEASRNLID---LFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 G++ ++AL A+R L D LF+ F E+ ++ F P L LKK Sbjct: 207 GAVNGEDALAFAARILQDQLALFINFKEPEKPTVEESNSELAFNPAL---------LKK- 256 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 +D+LEL+ R+ NCLK NI + DL+ KTE +++R +F + I + Sbjct: 257 ----------VDELELSVRSANCLKNDNIVYIGDLIQKTESEMLRTPNFGRKSLNEIKEV 306 Query: 68 L 66 L Sbjct: 307 L 307
>RPOA_RHIME (Q925Z2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 336 Score = 68.9 bits (167), Expect = 1e-11 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 7/184 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 + + +GY R +D G P+D+++ PV+ V+Y + + G ++ L + I Sbjct: 143 EFTVNNGKGYVPADRNRSEDAPIGLIPVDSLYSPVKKVSYKVENTREGQVLDYDKLTMSI 202 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN---KNRFTPPLFTFQKRLTNL 258 T+GS+T ++A+ A+R L D F++ +E EE + F P L L Sbjct: 203 ETDGSVTGEDAIAFAARILQDQLSVFVNFDEPQKETEEEAVTELAFNPAL---------L 253 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHI 78 KK +D+LEL+ R+ NCLK NI + DL+ KTE +++R +F + I Sbjct: 254 KK-----------VDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEI 302 Query: 77 WDTL 66 + L Sbjct: 303 KEVL 306
>RPOA_AGRTU (P0A4E4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 336 Score = 68.9 bits (167), Expect = 1e-11 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 7/184 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 + + +GY R +D G P+D+++ PV+ V+Y + + G ++ L + I Sbjct: 143 EFTVNNGKGYVPAERNRAEDAPIGLIPVDSLYSPVKKVSYKVENTREGQVLDYDKLIMTI 202 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN---KNRFTPPLFTFQKRLTNL 258 TNGS++ ++A+ A+R L D F++ +E EE + F P L L Sbjct: 203 ETNGSVSGEDAVAFAARILQDQLGVFVNFDEPQKEAEEESVTELAFNPAL---------L 253 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHI 78 KK +D+LEL+ R+ NCLK NI + DL+ KTE +++R +F + I Sbjct: 254 KK-----------VDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEI 302 Query: 77 WDTL 66 + L Sbjct: 303 KEVL 306
>RPOA_AGRT5 (P0A4E3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 336 Score = 68.9 bits (167), Expect = 1e-11 Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 7/184 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 + + +GY R +D G P+D+++ PV+ V+Y + + G ++ L + I Sbjct: 143 EFTVNNGKGYVPAERNRAEDAPIGLIPVDSLYSPVKKVSYKVENTREGQVLDYDKLIMTI 202 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEEN---KNRFTPPLFTFQKRLTNL 258 TNGS++ ++A+ A+R L D F++ +E EE + F P L L Sbjct: 203 ETNGSVSGEDAVAFAARILQDQLGVFVNFDEPQKEAEEESVTELAFNPAL---------L 253 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHI 78 KK +D+LEL+ R+ NCLK NI + DL+ KTE +++R +F + I Sbjct: 254 KK-----------VDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEI 302 Query: 77 WDTL 66 + L Sbjct: 303 KEVL 306
>RPOA_DESVH (Q72CF4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 347 Score = 68.6 bits (166), Expect = 1e-11 Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 8/173 (4%) Frame = -1 Query: 596 DLQIKRDRGY-QTELRKNYQD--GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEI 429 +L+++ +GY ++ + + G +DA F PVR V Y++ G ++ L LE+ Sbjct: 154 ELEVRMGKGYVPADMHEGLSEEIGLIKLDASFSPVRKVAYTVEQARVGQMTNYDKLILEV 213 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEE----EGTSFEENKNRFTPPLFTFQKRLTN 261 WT+GS++P++A+ +++ + D F++ +E E ++ + F LF Sbjct: 214 WTDGSVSPEDAIAYSAKIIKDQISVFINFDERISGENSNGSADSGEFNEHLFKS------ 267 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 ID+LEL+ R NCLK ANI + +L+ K+E ++++ +F Sbjct: 268 --------------IDELELSVRATNCLKSANIALVGELVQKSENEMLKTKNF 306
>RPOA_BARQU (Q6FZE6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 337 Score = 68.6 bits (166), Expect = 1e-11 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 7/181 (3%) Frame = -1 Query: 587 IKRDRGYQTELRKNYQDGSY---PIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEIWTN 420 + +GY R DG P+D+++ P+R V+Y + + G ++ L L I TN Sbjct: 147 VNTGKGYIPSDRNCVDDGRIGLIPVDSLYSPIRKVSYKVENTREGQVLDYDKLTLTIETN 206 Query: 419 GSLTPKEALYEASRNLID---LFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 G++ ++A+ A+R L D LF+ F ++E +++ F P L LKK Sbjct: 207 GAVNGEDAVAFAARILQDQLSLFVNFEEPQKEIVDESDSELTFNPAL---------LKK- 256 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 +D+LEL+ R+ NCLK NI + DL+ KTE +++R +F + I + Sbjct: 257 ----------VDELELSVRSANCLKNDNIVYIGDLIQKTESEMLRTPNFGRKSLNEIKEV 306 Query: 68 L 66 L Sbjct: 307 L 307
>RPOA_TREPA (O83242) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 351 Score = 68.6 bits (166), Expect = 1e-11 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 4/184 (2%) Frame = -1 Query: 596 DLQIKRDRGY-QTELRKNYQD--GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 +L ++ RGY E Y D G P+DA+F PV V Y I SC G ++ L LE+ Sbjct: 156 ELHVEFGRGYVPAESHDRYADLVGVIPVDAIFSPVLRVRYDIQSCRVGQRGDYDQLSLEV 215 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 WT+G++ P++A+ EA++ + + F F++ +E E+ P + L N K Sbjct: 216 WTDGTVRPEDAIAEAAKIIKEHFTVFVNFDETALDLEDEPEEDDPAVL----ELLNTK-- 269 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 I ++ + R NCL I TL +L +E+ L + + I Sbjct: 270 ----------IADVDFSVRARNCLLTMGIKTLGELTRISEQTLANTRNVGKKSLSEIQGK 319 Query: 68 LEKH 57 L+++ Sbjct: 320 LQEY 323
>RPOA_RHOPA (Q6N4V7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 339 Score = 68.2 bits (165), Expect = 2e-11 Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 4/181 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 + + +GY R +D G P+D+++ PVR V+Y + + G ++ L + + Sbjct: 146 EFTVNTGKGYVAAERNRPEDAPIGLIPVDSLYSPVRKVSYKVENTREGQILDYDKLTMTV 205 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 TNG+++P++A+ A+R L D F++ FEE + T Q+ + +L N Sbjct: 206 ETNGAISPEDAVAFAARILQDQLNVFVN-------FEEPRKEVT------QEIIPDLAFN 252 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 P +D+LEL+ R+ NCLK NI + DL+ K+E +++R +F + I + Sbjct: 253 ----PAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSLNEIKEV 308 Query: 68 L 66 L Sbjct: 309 L 309
>RPOA_NITOC (Q3J8T8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 332 Score = 68.2 bits (165), Expect = 2e-11 Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 7/183 (3%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD------GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFL 435 +++ R RGYQ+ + ++ G +DA F P+R V Y + S + L + Sbjct: 141 MKVVRGRGYQSASMRIPKEEDERSIGHLILDASFSPIRRVTYEVDSARVEQRTDLDKLII 200 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 EI TNG++ P EA+ +A+ L D F+ E + + +E K P+ Sbjct: 201 EIETNGTIAPDEAVRKAATILQDQLTAFVELEGKIETAKEKKAAEIDPVLLQP------- 253 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 ID LELT R+ NCLK NI+ + DL+ KTE +L++ + + I Sbjct: 254 ------------IDDLELTVRSANCLKAENIYYIGDLIQKTEVELLKTPNLGKKSLTEIK 301 Query: 74 DTL 66 D L Sbjct: 302 DVL 304
>RPOA_NITEU (Q82X69) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 336 Score = 68.2 bits (165), Expect = 2e-11 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 7/183 (3%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD------GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFL 435 + +++ RGY ++ +D G +DA F P+R V+Y++ S + L + Sbjct: 142 ITVEKGRGYWPSANRSKEDKSSSSIGDILLDASFSPIRRVSYAVESARVEQRTDLDKLII 201 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 +I TNGS+ P+EA+ A++ L++ F F E E+ K P+ Sbjct: 202 DIETNGSVDPEEAIRYAAKVLVEQFSFFADLESTPLPTEQPKAPVIDPILLRP------- 254 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 +D LELT R+ NCLK NI + DL+ +TE +L+R + + I Sbjct: 255 ------------VDDLELTVRSANCLKVENIFYIGDLIQRTEAELLRTPNLGRKSLNEIK 302 Query: 74 DTL 66 + L Sbjct: 303 EVL 305
>RPOA_NITWN (Q3SSU2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 339 Score = 67.8 bits (164), Expect = 2e-11 Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 4/181 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 + + +GY R +D G P+D+++ PVR V+Y + + G ++ L + I Sbjct: 146 EFTVASGKGYVAAERNRPEDAPIGLIPVDSLYSPVRKVSYKVENTREGQILDYDKLTMTI 205 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 TNG +TP++A+ A+R L D F++ FEE + T + + +L N Sbjct: 206 ETNGGVTPEDAVAFAARILQDQLNVFVN-------FEEPRKEVTTEI------IPDLAFN 252 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 P +D+LEL+ R+ NCLK NI + DL+ K+E +++R +F + I + Sbjct: 253 ----PAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSLNEIKEV 308 Query: 68 L 66 L Sbjct: 309 L 309
>RPOA_DESPS (Q6AP43) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 343 Score = 67.8 bits (164), Expect = 2e-11 Identities = 50/185 (27%), Positives = 94/185 (50%), Gaps = 7/185 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEK-HEILFLEI 429 +L ++ +GYQ + D G PIDA+F PV+ + Y + S G + ++ L EI Sbjct: 154 ELTVEWGKGYQPAENQEKDDLTVGQIPIDAIFTPVKKIQYVVSSARVGQQTDYDKLTYEI 213 Query: 428 WTNGSLTPKEALYEASRNL---IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNL 258 T+GS+ P++AL +++ L +D+F+ F + T+ E K Sbjct: 214 ETDGSVRPEDALAYSAKILKEQLDIFINF-----DETAVEPEKKAVET------------ 256 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHI 78 + K+ P ++ LEL+ R+ NCLK A+I+ + DL+ +T++++++ +F + I Sbjct: 257 -EEKQENPYLDKPVEDLELSVRSANCLKNADINFIGDLVQRTDQEMLKTKNFGRKSLNEI 315 Query: 77 WDTLE 63 L+ Sbjct: 316 KTLLQ 320
>RPOA_MYCMS (Q6MSP9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 317 Score = 67.4 bits (163), Expect = 3e-11 Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 5/179 (2%) Frame = -1 Query: 593 LQIKRDRGYQT----ELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEI 429 L K RGY+T + KN + G ID+ + P+ V YS+ S G E L LE+ Sbjct: 145 LYAKNSRGYKTFKDNKNEKNIEPGMITIDSNYSPIIKVAYSVDSAKIGRAIDLEKLELEV 204 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 T+GS+T +A+ ASR L+ H E F + NR L T+ K+ Sbjct: 205 TTDGSITAIDAISIASRILV------AHLE-----FFIDLNREISVLEVIGTNQTDDKEL 253 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWD 72 + + ++L+ T R+ NCLKRA I+TL +L+SK E+++ I + + K I D Sbjct: 254 DRTV-------EELDFTQRSLNCLKRAGINTLRELVSKNEDEIGSIRNLGRKSLKEIKD 305
>RPOA_RICFE (Q4UMQ5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 340 Score = 67.0 bits (162), Expect = 4e-11 Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 5/184 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD----GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLE 432 +L K +GY +Y+D G IDA+F PV++V Y + + G ++ L + Sbjct: 147 ELTCKVGKGYVLSTN-SYEDNLPIGEIAIDALFNPVKSVTYKVENTRVGQVTDYDKLIMF 205 Query: 431 IWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKK 252 + TNG L P+ A+ A+R L + F+ EE+ EE+K T L F L LK+ Sbjct: 206 VETNGDLLPEMAVGLAARILQEQLQLFISFEEQ----EEDKQVKTDAL-PFSPYL--LKR 258 Query: 251 NKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWD 72 +D+LEL+ R+ NCLK NI + DL+ +TE D++R +F + I + Sbjct: 259 -----------VDELELSVRSANCLKNDNIIYIGDLVKRTESDMLRTPNFGRKSLNEIKE 307 Query: 71 TLEK 60 L K Sbjct: 308 ILAK 311
>RPOA_PROAC (Q6A6R1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 338 Score = 67.0 bits (162), Expect = 4e-11 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 6/171 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRK---NYQDGSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 +L ++R RGY + N + G +D+++ PV V Y + + + L +++ Sbjct: 137 ELIVERGRGYVSSALNDDPNAEIGRIAVDSIYSPVLKVTYKVEATRVEQRTDFDKLVVDV 196 Query: 428 WTNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 T S+ P++A+ A + L++LF L+ E EG P + + L Sbjct: 197 ETKPSILPRDAIASAGKTLVELFGLTRELNVEAEGIEIGSG-----PVDEEYAESL---- 247 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 G P +++L LT R+YNCLKR IHT+ +L+S++E+DL+ I +F Sbjct: 248 ----GTP-----VEELNLTVRSYNCLKREGIHTVGELVSRSEQDLLAIRNF 289
>RPOA_BURPS (Q63Q37) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 325 Score = 67.0 bits (162), Expect = 4e-11 Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 9/186 (4%) Frame = -1 Query: 596 DLQIK--RDRGYQTELRKNYQD------GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EI 444 D+QIK + RGY + Y D G +DA F PVR V+Y++ S + Sbjct: 137 DVQIKVEKGRGYVPGNVRRYGDETAKIIGRIVLDASFSPVRRVSYTVESARVEQRTDLDK 196 Query: 443 LFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLT 264 L + I T+G +TP+EA+ +++R L+D F A EGT P + Sbjct: 197 LVMNIETSGVITPEEAIRQSARILVDQLSVF--AALEGTETAAEAPSRAPQID------- 247 Query: 263 NLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRK 84 P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + Sbjct: 248 ---------PILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLN 298 Query: 83 HIWDTL 66 I + L Sbjct: 299 EIKEVL 304
>RPOA_BURP1 (Q3JMT9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 325 Score = 67.0 bits (162), Expect = 4e-11 Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 9/186 (4%) Frame = -1 Query: 596 DLQIK--RDRGYQTELRKNYQD------GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EI 444 D+QIK + RGY + Y D G +DA F PVR V+Y++ S + Sbjct: 137 DVQIKVEKGRGYVPGNVRRYGDETAKIIGRIVLDASFSPVRRVSYTVESARVEQRTDLDK 196 Query: 443 LFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLT 264 L + I T+G +TP+EA+ +++R L+D F A EGT P + Sbjct: 197 LVMNIETSGVITPEEAIRQSARILVDQLSVF--AALEGTETAAEAPSRAPQID------- 247 Query: 263 NLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRK 84 P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + Sbjct: 248 ---------PILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLN 298 Query: 83 HIWDTL 66 I + L Sbjct: 299 EIKEVL 304
>RPOA_BURMA (Q62GN1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 325 Score = 67.0 bits (162), Expect = 4e-11 Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 9/186 (4%) Frame = -1 Query: 596 DLQIK--RDRGYQTELRKNYQD------GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EI 444 D+QIK + RGY + Y D G +DA F PVR V+Y++ S + Sbjct: 137 DVQIKVEKGRGYVPGNVRRYGDETAKIIGRIVLDASFSPVRRVSYTVESARVEQRTDLDK 196 Query: 443 LFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLT 264 L + I T+G +TP+EA+ +++R L+D F A EGT P + Sbjct: 197 LVMNIETSGVITPEEAIRQSARILVDQLSVF--AALEGTETAAEAPSRAPQID------- 247 Query: 263 NLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRK 84 P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + Sbjct: 248 ---------PILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLN 298 Query: 83 HIWDTL 66 I + L Sbjct: 299 EIKEVL 304
>RPOA_MYCPE (Q8EUD7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 331 Score = 66.6 bits (161), Expect = 5e-11 Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 1/150 (0%) Frame = -1 Query: 524 IDAVFMPVRNVNYSIFSCGNG-NEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFL 348 +D+ F PV V Y + NE +++L LE+ TNG+++ EA+ +++ L++ + P + Sbjct: 180 VDSNFSPVLKVGYKVSDIKTTKNEINDVLELEVATNGAVSAAEAVAMSAKILLEHYKPIV 239 Query: 347 HAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRA 168 T +N N L + T + +K + ++ ID+LEL+ R+YNCLKRA Sbjct: 240 ------TELFDNYN----DLRIINEEAT-VSSSKSSLAIS---IDELELSVRSYNCLKRA 285 Query: 167 NIHTLLDLLSKTEEDLMRIDSFRMEDRKHI 78 IHT+ L KT+ ++ +I + + K I Sbjct: 286 GIHTITQLTDKTKGEIEKIRNLGKKSFKEI 315
>RPOA_RHILO (Q98N33) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 336 Score = 66.2 bits (160), Expect = 7e-11 Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 7/184 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 + + +GY R +D G P+D+++ PV+ V+Y + + G ++ L + I Sbjct: 143 EFTVDTGKGYVPAERNRAEDAPIGLIPVDSLYSPVKKVSYKVENTREGQVLDYDKLTMTI 202 Query: 428 WTNGSLTPKEALYEASRNLID---LFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNL 258 T+GS++ ++A+ A+R L D LF+ F ++E + + F P L L Sbjct: 203 ETDGSISGEDAVAFAARILQDQLGLFVNFDEPQKEVAAEAVTELAFNPAL---------L 253 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHI 78 KK +D+LEL+ R+ NCLK NI + DL+ KTE +++R +F + I Sbjct: 254 KK-----------VDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEI 302 Query: 77 WDTL 66 + L Sbjct: 303 KEVL 306
>RPOA_RICTY (Q68WA2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 340 Score = 65.9 bits (159), Expect = 9e-11 Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 8/187 (4%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD----GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLE 432 +L K +GY +Y+D G IDA+F PV++V Y + + G ++ L + Sbjct: 147 ELTCKVGKGYVLSTN-SYEDNLPIGEIAIDALFNPVKSVTYKVENTRVGQVTDYDKLIIF 205 Query: 431 IWTNGSLTPKEALYEASRNL---IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTN 261 + TNG + P+ A+ A+R L + LF+ F +EE + + F+P L Sbjct: 206 VETNGDVLPEMAVGLAARILQEQLQLFIAF-EEQEEDKQVKTDSLPFSPYL--------- 255 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 LK+ +D+LEL+ R+ NCLK NI + DL+ +TE D++R +F + Sbjct: 256 LKR-----------VDELELSVRSANCLKNDNIIYIGDLVKRTESDMLRTPNFGRKSLNE 304 Query: 80 IWDTLEK 60 I + L K Sbjct: 305 IKEILAK 311
>RPOA_RICPR (Q9ZCS9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 340 Score = 65.9 bits (159), Expect = 9e-11 Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 8/187 (4%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD----GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLE 432 +L K +GY +Y+D G IDA+F PV++V Y + + G ++ L + Sbjct: 147 ELTCKVGKGYVLSTN-SYEDNLPIGEIAIDALFNPVKSVTYKVENTRVGQVTDYDKLIMF 205 Query: 431 IWTNGSLTPKEALYEASRNL---IDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTN 261 + TNG + P+ A+ A+R L + LF+ F +EE + + F+P L Sbjct: 206 VETNGDVLPEMAVGLAARILQEQLQLFIAF-EEQEEDKQVKTDSLPFSPYL--------- 255 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 LK+ +D+LEL+ R+ NCLK NI + DL+ +TE D++R +F + Sbjct: 256 LKR-----------VDELELSVRSANCLKNDNIIYIGDLVKRTESDMLRTPNFGRKSLNE 304 Query: 80 IWDTLEK 60 I + L K Sbjct: 305 IKEILAK 311
>RPOA_RICCN (Q92GZ0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 340 Score = 65.9 bits (159), Expect = 9e-11 Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 5/184 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD----GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLE 432 +L K +GY +Y+D G IDA+F PV++V Y + + G ++ L + Sbjct: 147 ELTCKVGKGYVLSTN-SYEDNLPIGEIAIDALFNPVKSVTYKVENTRVGQVTDYDKLIMF 205 Query: 431 IWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKK 252 + TNG + P+ A+ A+R L + F+ EE+ EE+K T L F L LK+ Sbjct: 206 VETNGDVLPEMAVGLAARILQEQLQLFISFEEQ----EEDKQVKTDTL-PFSPYL--LKR 258 Query: 251 NKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWD 72 +D+LEL+ R+ NCLK NI + DL+ +TE D++R +F + I + Sbjct: 259 -----------VDELELSVRSANCLKNDNIIYIGDLVKRTESDMLRTPNFGRKSLNEIKE 307 Query: 71 TLEK 60 L K Sbjct: 308 ILAK 311
>RPOA_TREDE (Q73PK8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 351 Score = 65.9 bits (159), Expect = 9e-11 Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 7/166 (4%) Frame = -1 Query: 596 DLQIKRDRGY-QTELRKNYQD--GSYPIDAVFMPVRNVNYSIFSCGNGNEK-HEILFLEI 429 D+Q+ RGY E+ + Y + G+ P+DA++ PV V+Y+I C G ++ L LEI Sbjct: 156 DVQVDFGRGYVPAEVNEKYIEIVGTIPMDAIYGPVLKVSYAIEPCRVGQRNDYDKLILEI 215 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEE---GTSFEENKNRFTPPLFTFQKRLTNL 258 WT+ ++ P++ L EA++ D F F++ E G ++N+ L Sbjct: 216 WTDSTVRPEDVLGEAAKIAKDHFSIFINFNENDYLGEDEDDNEEAVIKQLLATS------ 269 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDL 120 I+ L+ + R NCL A I TL +L K+E+++ Sbjct: 270 -------------INTLDFSVRAKNCLDSAGIKTLGELAQKSEDEI 302
>RPOA_RALSO (Q8XV38) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 326 Score = 65.5 bits (158), Expect = 1e-10 Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 9/186 (4%) Frame = -1 Query: 596 DLQIK--RDRGYQTELRKNYQD------GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EI 444 D+QIK + RGY + + D G +DA F PVR V+Y++ S + Sbjct: 137 DMQIKVEQGRGYVPGNVRKFGDESSKVIGRIVLDASFAPVRRVSYAVESARVEQRTDLDK 196 Query: 443 LFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLT 264 L + I TNG ++P+EA+ +++R L+D F A EGT P Sbjct: 197 LVMNIETNGVISPEEAIRQSARILVDQLSVF--AALEGTESAAEAAAARAPQID------ 248 Query: 263 NLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRK 84 P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + Sbjct: 249 ---------PILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLN 299 Query: 83 HIWDTL 66 I + L Sbjct: 300 EIKEVL 305
>RPOA_PORGI (Q7MTP0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 65.5 bits (158), Expect = 1e-10 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 7/197 (3%) Frame = -1 Query: 596 DLQIKRDRGYQT--ELRKNYQD-GSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 + I + RGY + E R + + + ID+++ P+RNV Y++ + +E L +E+ Sbjct: 143 EFSINKGRGYVSAEENRAEHNELSTIAIDSIYTPIRNVKYAVENFRVEQKTDYEKLLMEV 202 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 T+GS+ P +AL EA++ LI F F E + E T + L K+ Sbjct: 203 TTDGSIRPVDALREAAQILISHFSLFA---ENKIAIEYVDIVDTDEFDEDSLHMRQLLKS 259 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF---RMEDRKHI 78 K + L+L+ R NCL A + TL DL+S + DLM+I +F + + + Sbjct: 260 K---------LSGLDLSVRALNCLNAAGVDTLGDLVSLSRSDLMKIRNFGKKSLTELDEL 310 Query: 77 WDTLEKHLPIDLLKNKL 27 TL +D+ K KL Sbjct: 311 LATLNLSFGMDISKYKL 327
>RPOA_BURS3 (Q39KE1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 325 Score = 65.5 bits (158), Expect = 1e-10 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 7/183 (3%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD------GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFL 435 ++I++ RGY + Y + G +DA F PVR V+Y++ S + L + Sbjct: 140 IKIEKGRGYVPGNVRRYGEDTAKIIGRIVLDASFSPVRRVSYAVESARVEQRTDLDKLVM 199 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 I T+G +TP+EA+ +++R L+D F A EGT P + Sbjct: 200 NIETSGVITPEEAIRQSARILVDQLSVF--AALEGTETAAEAPSRAPQID---------- 247 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + I Sbjct: 248 ------PILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIK 301 Query: 74 DTL 66 + L Sbjct: 302 EVL 304
>RPOA_STRGT (Q9X4V6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 340 Score = 65.1 bits (157), Expect = 1e-10 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 6/171 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNY---QDGSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 +L ++R RGY + ++ + G P+D+++ PV V Y + + + L +++ Sbjct: 137 ELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIVDV 196 Query: 428 WTNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 T ++ P++A+ A + L++LF L+ + EG P T +L Sbjct: 197 ETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMG--------PSPTDAALAADL- 247 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 + I++LELT R+YNCLKR IH++ +L++++E DL+ I +F Sbjct: 248 ---------ALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNF 289
>RPOA_STRCO (P60312) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 340 Score = 65.1 bits (157), Expect = 1e-10 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 6/171 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNY---QDGSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 +L ++R RGY + ++ + G P+D+++ PV V Y + + + L +++ Sbjct: 137 ELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIVDV 196 Query: 428 WTNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 T ++ P++A+ A + L++LF L+ + EG P T +L Sbjct: 197 ETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMG--------PSPTDAALAADL- 247 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 + I++LELT R+YNCLKR IH++ +L++++E DL+ I +F Sbjct: 248 ---------ALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNF 289
>RPOA1_STRAW (P60313) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 340 Score = 65.1 bits (157), Expect = 1e-10 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 6/171 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNY---QDGSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 +L ++R RGY + ++ + G P+D+++ PV V Y + + + L +++ Sbjct: 137 ELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIVDV 196 Query: 428 WTNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 T ++ P++A+ A + L++LF L+ + EG P T +L Sbjct: 197 ETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMG--------PSPTDAALAADL- 247 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 + I++LELT R+YNCLKR IH++ +L++++E DL+ I +F Sbjct: 248 ---------ALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNF 289
>RPOA_BRAJA (Q89JA7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 343 Score = 65.1 bits (157), Expect = 1e-10 Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 4/181 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 + + +GY R +D G P+D+++ PVR V+Y + + G ++ L + I Sbjct: 150 EFTVATGKGYVPAERNRPEDAPIGLIPVDSLYSPVRKVSYKVENTREGQILDYDKLTMTI 209 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 TNG+++P +++ A+R L D F++ EE P Q+ + +L N Sbjct: 210 ETNGAISPDDSVAYAARILQDQLNVFVNFEE-------------PRKEVAQEIIPDLAFN 256 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 P +D+LEL+ R+ NCLK NI + DL+ K+E +++R +F + I + Sbjct: 257 ----PAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSLNEIKEV 312 Query: 68 L 66 L Sbjct: 313 L 313
>RPOA_BLOFL (Q7VQC3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 331 Score = 65.1 bits (157), Expect = 1e-10 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 10/186 (5%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD-------GSYPIDAVFMPVRNVNYSIFSCGNGNEKHEI--L 441 ++++R RGY + D G +DA + PV ++Y++ ++ ++ L Sbjct: 145 IKVQRGRGYVPAFSRFSSDDQHDLPIGRLLLDACYSPVERISYTV-EAARVEKRTDLDKL 203 Query: 440 FLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEE-EGTSFEENKNRFTPPLFTFQKRLT 264 +++ TNG++ P+EA+ A+ L D F+ ++ +E K F P L Sbjct: 204 IIDMETNGTIDPEEAIRRAATILSDQLSSFIDLKDVHQPEVKEEKPEFDPSLLNL----- 258 Query: 263 NLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRK 84 +D LELT R+ NCLK +IH + DL+ KTE +L++ + + Sbjct: 259 ---------------VDDLELTVRSANCLKAESIHYIGDLVQKTEVELLKTPNLGKKSLT 303 Query: 83 HIWDTL 66 I D L Sbjct: 304 EIKDVL 309
>RPOA_DECAR (Q47J77) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 324 Score = 64.7 bits (156), Expect = 2e-10 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 5/182 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD----GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLE 432 ++++++ RGY +N D G +DA F P+R V Y++ S + L ++ Sbjct: 140 EIKVEKGRGYVPGNVRNLGDAKTIGKLVLDASFSPIRRVAYAVESARVEQRTDLDKLIVD 199 Query: 431 IWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKK 252 I TNG + P+EA+ A+R L++ F A+ EGT+ + K Sbjct: 200 IETNGVVEPEEAIRYAARVLMEQLSVF--ADLEGTA-----------------PVAEASK 240 Query: 251 NKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWD 72 + P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + I + Sbjct: 241 PAQVDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKE 300 Query: 71 TL 66 L Sbjct: 301 VL 302
>RPOA_PSEAE (O52760) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 333 Score = 64.3 bits (155), Expect = 3e-10 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 7/183 (3%) Frame = -1 Query: 593 LQIKRDRGYQ-TELRKNYQD-----GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFL 435 L++ R RGY+ + R++ +D G +DA F PVR V+Y + + + + L L Sbjct: 143 LKVARGRGYEPADARQSDEDESRSIGRLQLDASFSPVRRVSYVVENARVEQRTNLDKLVL 202 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 ++ TNG+L P+EA+ A+ L F+ + + E + P+ Sbjct: 203 DLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPVVEEQEDEIDPILLRP------- 255 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + I Sbjct: 256 ------------VDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLTEIK 303 Query: 74 DTL 66 D L Sbjct: 304 DVL 306
>RPOA_RALEJ (Q46WG9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 326 Score = 63.9 bits (154), Expect = 3e-10 Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 9/186 (4%) Frame = -1 Query: 596 DLQIK--RDRGYQTELRKNYQD------GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EI 444 D+QIK + RGY + + D G +DA F PVR V+Y++ S + Sbjct: 137 DMQIKVEQGRGYVPGNVRKFGDESSKVIGRIVLDASFSPVRRVSYAVESARVEQRTDLDK 196 Query: 443 LFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLT 264 L + I T+G ++P+EA+ +++R L+D F E ++ E +R P + Sbjct: 197 LVMNIETDGVISPEEAIRQSARILVDQLSVFAALEGTESAAEAASSR-APQID------- 248 Query: 263 NLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRK 84 P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + Sbjct: 249 ---------PILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLN 299 Query: 83 HIWDTL 66 I + L Sbjct: 300 EIKEVL 305
>RPOA_MESFL (Q6F1W7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 317 Score = 63.5 bits (153), Expect = 4e-10 Identities = 58/187 (31%), Positives = 81/187 (43%), Gaps = 13/187 (6%) Frame = -1 Query: 593 LQIKRDRGYQT-----ELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLE 432 L K RGY+T EL K+ G ID+ + P+ V Y G + E L LE Sbjct: 145 LYAKNSRGYKTFKENKEL-KDVVPGMITIDSNYSPIIKVAYGSTPINLGKAQDFEKLILE 203 Query: 431 IWTNGSLTPKEALYEASRNLIDLFLPFLHAEEE-------GTSFEENKNRFTPPLFTFQK 273 + T+GS+ +A+ AS+ LI F F EE G E K P Sbjct: 204 VETDGSILASDAVSLASKILISHFDVFTTLAEEVEEVAIMGVETVEEKELDKP------- 256 Query: 272 RLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRME 93 +++LE T R+ NCLKRA I TL +L+SKTE+++ I + + Sbjct: 257 ------------------VEELEFTQRSLNCLKRAGISTLRELVSKTEDEIQDIRNLGRK 298 Query: 92 DRKHIWD 72 K I D Sbjct: 299 SLKEIKD 305
>RPOA_BUCAI (P57566) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 63.2 bits (152), Expect = 6e-10 Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 9/185 (4%) Frame = -1 Query: 593 LQIKRDRGY-QTELRKNYQDGSYPI-----DAVFMPVRNVNYSIFSCGNGNEKHEI--LF 438 ++++R RGY R + ++ S PI DA + P+ ++Y++ ++ ++ L Sbjct: 144 IKVQRGRGYIPASSRVHLEEDSRPIGCLLVDACYSPINRISYNV-EAARVEQRTDLDKLV 202 Query: 437 LEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEE-EGTSFEENKNRFTPPLFTFQKRLTN 261 +E+ TNG++ P+EA+ A+ L + F+ + F+E K F P L Sbjct: 203 IEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDIREPEFKEEKPEFEPILLRP------ 256 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 +D LELT R+ NCLK IH + DL+ +TE +L++ + + Sbjct: 257 --------------VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 Query: 80 IWDTL 66 I D L Sbjct: 303 IKDVL 307
>RPOA2_STRAW (Q82QR5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 338 Score = 62.8 bits (151), Expect = 7e-10 Identities = 43/172 (25%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNY---QDGSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEI 429 +L ++R RGY + ++ + G P+D+++ PV V Y + + + L +++ Sbjct: 137 ELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIVDV 196 Query: 428 WTNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 T ++ P++A+ A + L++LF L+ + EG + P+ Sbjct: 197 ETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPS------PV----------- 239 Query: 254 KNKKGIPLNCIF-IDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 + + + I++LELT R+YNCLKR +H++ +L++++E DL+ I +F Sbjct: 240 --DAALAADLVMPIEELELTVRSYNCLKREGVHSVGELVARSEADLLDIRNF 289
>RPOA_HAEIN (P43737) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 62.4 bits (150), Expect = 1e-09 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 8/184 (4%) Frame = -1 Query: 593 LQIKRDRGY-----QTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEI--LFL 435 ++++R RGY +T ++ G +DA + PV + Y++ ++ ++ L + Sbjct: 144 IRVQRGRGYVPASSRTHTQEERPIGRLLVDACYSPVERIAYNV-EAARVEQRTDLDKLVI 202 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEE-EGTSFEENKNRFTPPLFTFQKRLTNL 258 E+ TNG+L P+EA+ A+ L + F+ + +E K F P L Sbjct: 203 ELETNGALEPEEAIRRAATILAEQLDAFVDLRDVRQPEIKEEKPEFXPILLRP------- 255 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHI 78 +D LELT R+ NCLK IH + DL+ +TE +L++ + + I Sbjct: 256 -------------VDDLELTVRSANCLKAETIHYIGDLVQRTEVELLKTPNLGKKSLTEI 302 Query: 77 WDTL 66 D L Sbjct: 303 KDVL 306
>RPOA_MYCGA (Q9RDV6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 325 Score = 62.4 bits (150), Expect = 1e-09 Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 3/191 (1%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSY---PIDAVFMPVRNVNYSIFSCGNGNEKHEILFLEIW 426 D+ R RG++T + GS PID+ F P+ V Y + + + L +E+ Sbjct: 152 DIYATRGRGFKTAAENRSEIGSLSIIPIDSNFNPIIKVGYHVEE-ETSDVITDKLIIEVG 210 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 TNG + +A+ AS+ L D P + N+ + ++ K K Sbjct: 211 TNGLIKSGDAIAIASKILSDHLKPLIDI-----------NKSLHDIQVLNEKNVEEKNKK 259 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 IP I+QL+LT R+YNCLKR I T+ +L+++++ ++ I + + + I L Sbjct: 260 LSIP-----IEQLDLTVRSYNCLKRHGIQTVEELVTRSKSEIENIRNLGKKSVREINKKL 314 Query: 65 EKHLPIDLLKN 33 + + L N Sbjct: 315 SELYDLKLKNN 325
>RPOA_PARUW (Q6ME42) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 371 Score = 62.0 bits (149), Expect = 1e-09 Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 7/192 (3%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYP---IDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEI 429 DL+I RGY R +D + +DA F PVR +NY I + G + + L +E+ Sbjct: 159 DLRIAFGRGYVPSERHVVRDKTSDEILVDAAFSPVRLINYFIENTRVGQDTDFDRLIMEV 218 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 T+G +TP EAL A + + F F SF+E +L+ Sbjct: 219 TTDGRITPAEALSFAVQIGLKHFEVFNQFNNYALSFDEKDGDRNGDQDELMDKLS----- 273 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 + ID++EL+ R+ NCL ANI TL +L+ E ++ +F + I Sbjct: 274 --------LGIDEIELSVRSANCLTGANIETLAELVCIPERRMLEFRNFGKKSLNEIKAK 325 Query: 68 LEK---HLPIDL 42 L + HL +DL Sbjct: 326 LHEMSLHLGMDL 337
>RPOA_HAEI8 (Q4QM97) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 62.0 bits (149), Expect = 1e-09 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 8/184 (4%) Frame = -1 Query: 593 LQIKRDRGY-----QTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKHEI--LFL 435 ++++R RGY +T ++ G +DA + PV + Y++ ++ ++ L + Sbjct: 144 IRVQRGRGYVPASSRTHTQEERPIGRLLVDACYSPVERIAYNV-EAARVEQRTDLDKLVI 202 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEE-EGTSFEENKNRFTPPLFTFQKRLTNL 258 E+ TNG+L P+EA+ A+ L + F+ + +E K F P L Sbjct: 203 ELETNGALEPEEAIRRAATILAEQLDAFVDLRDVRQPEIKEEKPEFDPILLRP------- 255 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHI 78 +D LELT R+ NCLK IH + DL+ +TE +L++ + + I Sbjct: 256 -------------VDDLELTVRSANCLKAETIHYIGDLVQRTEVELLKTPNLGKKSLTEI 302 Query: 77 WDTL 66 D L Sbjct: 303 KDVL 306
>RPOA_AZOSE (Q5P307) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 326 Score = 62.0 bits (149), Expect = 1e-09 Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 8/185 (4%) Frame = -1 Query: 596 DLQIKRD--RGYQT-ELRKNYQD----GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EIL 441 D+QIK + RGY +R D G +DA F PVR V+Y + S + L Sbjct: 138 DMQIKVEEGRGYVPGNVRPAAGDTKTIGRVVLDASFSPVRRVSYLVESARVEQRTDLDRL 197 Query: 440 FLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTN 261 ++I TNG++ P+EA+ A+R L+D F E E++ + P+ Sbjct: 198 VIDIETNGAVDPEEAIRYAARVLMDQLSVFADLEGTAPVVEQSAAQTIDPVLLRP----- 252 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + Sbjct: 253 --------------VDDLELTVRSANCLKAENIYYIGDLIQRTETELLKTPNLGRKSLNE 298 Query: 80 IWDTL 66 I + L Sbjct: 299 IKEVL 303
>RPOA_WOLPM (Q73HA9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 355 Score = 61.6 bits (148), Expect = 2e-09 Identities = 39/149 (26%), Positives = 77/149 (51%), Gaps = 4/149 (2%) Frame = -1 Query: 536 GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIWTNGSLTPKEALYEASRNLIDLF 360 G P++A++ PV V+Y + + G + L L I T+G+++P +A+ A+R L + Sbjct: 182 GFIPVNALYSPVNRVSYRVENSRVGQVTDKDKLILSIETDGTISPSQAVDSAARILQEQL 241 Query: 359 LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIF---IDQLELTSRT 189 PF+ ++ +++K + K + + + +D++EL+ R+ Sbjct: 242 QPFISSD-----------------VSYKKSQVSSSSGAKDLGYDPVLLRKVDEMELSVRS 284 Query: 188 YNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 +NCLK NI + DL+ KTE +++R +F Sbjct: 285 HNCLKNENITYIGDLVQKTEGEMLRTANF 313
>RPOA_MYCPN (Q50295) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 327 Score = 61.6 bits (148), Expect = 2e-09 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 4/177 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQDGSYPI---DAVFMPVRNVNYSIFSCGNGNEK-HEILFLEI 429 ++ +K+ RG+ T L S I D+ F PV + Y + +K + L +I Sbjct: 154 NVYVKQGRGFVTFLENREMINSLGIIATDSNFSPVLHCGYEVQELKTSKQKITDHLTFKI 213 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 TNG+++ +A A++ LI+ P ++ E + + + ++R+ + K Sbjct: 214 ATNGAISAVDAFAMAAKILIEHLNPIVNVNESIKALNIIQEKAE------ERRVRSFAKQ 267 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHI 78 I++L+ T RT+NCLKR+ IHTL +LLSK+ D+ I + + + I Sbjct: 268 ----------IEELDFTVRTFNCLKRSGIHTLQELLSKSLADIREIRNLGKKSEREI 314
>RPOA_EHRRW (Q5HAU5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 374 Score = 61.6 bits (148), Expect = 2e-09 Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 1/153 (0%) Frame = -1 Query: 521 DAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLH 345 +A++ P++ ++ + S G ++ L + + T+ S+ P EA+ A+R L D F F++ Sbjct: 209 NALYSPIKKASFRVESSRIGQFTDYDRLIMSVETDHSILPDEAVALAARILQDQFQQFIN 268 Query: 344 AEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN 165 +E E ++ T + + L L+K +D+LEL+ R+YNCLK N Sbjct: 269 FDETD---EPHQKVDTKDVLPYDSNL--LRK-----------VDELELSVRSYNCLKNDN 312 Query: 164 IHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 I + DL+ KTE D++R +F + I + L Sbjct: 313 ITYIGDLVQKTESDMLRTPNFGRKSLNEINELL 345
>RPOA_EHRRG (Q5FFS1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 374 Score = 61.6 bits (148), Expect = 2e-09 Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 1/153 (0%) Frame = -1 Query: 521 DAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLH 345 +A++ P++ ++ + S G ++ L + + T+ S+ P EA+ A+R L D F F++ Sbjct: 209 NALYSPIKKASFRVESSRIGQFTDYDRLIMSVETDHSILPDEAVALAARILQDQFQQFIN 268 Query: 344 AEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRAN 165 +E E ++ T + + L L+K +D+LEL+ R+YNCLK N Sbjct: 269 FDETD---EPHQKVDTKDVLPYDSNL--LRK-----------VDELELSVRSYNCLKNDN 312 Query: 164 IHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 I + DL+ KTE D++R +F + I + L Sbjct: 313 ITYIGDLVQKTESDMLRTPNFGRKSLNEINELL 345
>RPOA_CHLPN (Q9Z7S8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 374 Score = 61.6 bits (148), Expect = 2e-09 Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 5/169 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD-GSYPI--DAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIW 426 L+I RGY R +D G Y I DA F PV VNY + G + + L L + Sbjct: 169 LRIAFGRGYTPSERIVLEDKGVYEIVLDAAFSPVTLVNYFVEDTRVGQDTDFDRLVLIVE 228 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 T+G +TPKEAL +++ L F F + +E+ FEE ++ K+NK Sbjct: 229 TDGRVTPKEALAFSTQILTKHFSIFENMDEKKIVFEE--------------AISIEKENK 274 Query: 245 KGIPLNCIF-IDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 I I I+++EL+ R+ NCL ANI T+ +L+ E L++ +F Sbjct: 275 DDILHKLILGINEIELSVRSTNCLSNANIETIGELVIMPEPRLLQFRNF 323
>RPOA_PELUB (Q4FLP1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 342 Score = 61.2 bits (147), Expect = 2e-09 Identities = 45/181 (24%), Positives = 91/181 (50%), Gaps = 4/181 (2%) Frame = -1 Query: 596 DLQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNE-KHEILFLEI 429 ++ + +GY + ++ G ID+++ PV+ V+YSI + G ++ L +E+ Sbjct: 149 EMNVGTGKGYVPAVMNKPEEPPLGLIAIDSLYSPVKKVSYSISTAREGKALDYDKLIMEV 208 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKN 249 TNGS++ ++A+ ++R D F++ +E P+ K +++ + Sbjct: 209 ETNGSISAEDAVAYSARIFQDQLNMFVNFDE--------------PVEVPVKEVSSEPEF 254 Query: 248 KKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDT 69 K + +D+LEL+ R+ NCLK NI + DL+ K+E +++R +F + I + Sbjct: 255 NKNLLRK---VDELELSVRSMNCLKNDNIIYIGDLVQKSEGEMLRTPNFGRKSLNEIKEV 311 Query: 68 L 66 L Sbjct: 312 L 312
>RPOA_WIGBR (Q8D1Y8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 61.2 bits (147), Expect = 2e-09 Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 18/205 (8%) Frame = -1 Query: 593 LQIKRDRGYQTEL-RKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEKHEI--LFLE 432 +++++ RGY + R + +D G +DA + P+ ++Y++ ++ ++ L +E Sbjct: 144 IKVQKGRGYVPAISRMHIEDRPIGRLLLDACYSPIERISYNV-EAARVEQRTDLDKLIIE 202 Query: 431 IWTNGSLTPKEALYEASRNLIDLFLPFLHAEE-EGTSFEENKNRFTPPLFTFQKRLTNLK 255 + TNG++ P+ A+ A+ L + F+ + +E K F P L Sbjct: 203 METNGTIDPESAIRRAATILSEQLEAFIDLRDIRKPEIKEEKPEFDPVLLRP-------- 254 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 +D LELT R+ NCLK +IH + DL+ +TE +L++ + + I Sbjct: 255 ------------VDDLELTVRSANCLKAESIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 302 Query: 74 DTL-----------EKHLPIDLLKN 33 D L E P+ +LKN Sbjct: 303 DVLSTRNLTLGMRIENWPPVSILKN 327
>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 366 Score = 61.2 bits (147), Expect = 2e-09 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 5/162 (3%) Frame = -1 Query: 536 GSYPIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIWTNGSLTPKEALYEASRNLIDLF 360 G +A++ PV+ V + I S G ++ L + + T+GS++P EA+ ++R L D Sbjct: 194 GFIATNALYSPVKKVAFRIESSRIGQFTDYDRLVISVETDGSISPDEAVAVSARVLQDQL 253 Query: 359 LPFLHAEE-EGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIF---IDQLELTSR 192 F+ +EE EG S ++ + K + +P + +D+LEL+ R Sbjct: 254 QSFIGSEEVEGESRKK------------------VDKEEGALPYDHNLLRKVDELELSVR 295 Query: 191 TYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIWDTL 66 ++NCLK NI + DL+ KTE D++R +F + I + L Sbjct: 296 SHNCLKNDNITYIGDLVQKTESDMLRTPNFGRKSLNEINEVL 337
>RPOA_BUCAP (O69232) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 60.8 bits (146), Expect = 3e-09 Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 9/185 (4%) Frame = -1 Query: 593 LQIKRDRGY-QTELRKNYQDGSYPI-----DAVFMPVRNVNYSIFSCGNGNEKHEI--LF 438 ++++R RGY R + +D PI DA + P+ ++Y++ ++ ++ L Sbjct: 144 IKVQRGRGYIPASSRIHMEDDLRPIGCLLVDACYSPINRISYNV-EAARVEQRTDLDKLI 202 Query: 437 LEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEE-EGTSFEENKNRFTPPLFTFQKRLTN 261 +E+ TNG++ P+EA+ A+ L + F+ + + +E K F P L Sbjct: 203 IEMKTNGTIDPEEAIRRAATILSEQLEAFVDLRDVKEPEIKEEKPEFEPILLRP------ 256 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 +D LELT R+ NCLK +IH + DL+ +TE +L++ + + Sbjct: 257 --------------VDDLELTVRSANCLKAESIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 Query: 80 IWDTL 66 I D L Sbjct: 303 IKDIL 307
>RPOA_TROWT (Q820D4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 327 Score = 60.8 bits (146), Expect = 3e-09 Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 8/184 (4%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGS-----YPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLE 432 L I+R RGY +N DG P+D+++ PV V Y + + G + L ++ Sbjct: 138 LTIERGRGY-VSAEQNRNDGMSLAGHIPVDSIYSPVHKVTYRVEATRAGERTDFDRLIID 196 Query: 431 IWTNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNL 258 + T S+ P++A+ A + L +LF L+++ EG F + + Sbjct: 197 VETKPSILPRDAVASAGKTLCELFGLARELNSQAEGVEFGVDS-------------MIPE 243 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHI 78 IP I+ L L+ R+YNCLKR ++ + +LL +E++L+ I +F + + Sbjct: 244 SDEDLRIP-----IEDLGLSVRSYNCLKREGVNYVSELLGFSEQELLDIRNFGQKSADEV 298 Query: 77 WDTL 66 + L Sbjct: 299 QEKL 302
>RPOA_TROW8 (Q820D8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 327 Score = 60.8 bits (146), Expect = 3e-09 Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 8/184 (4%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQDGS-----YPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLE 432 L I+R RGY +N DG P+D+++ PV V Y + + G + L ++ Sbjct: 138 LTIERGRGY-VSAEQNRNDGMSLAGHIPVDSIYSPVHKVTYRVEATRAGERTDFDRLIID 196 Query: 431 IWTNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNL 258 + T S+ P++A+ A + L +LF L+++ EG F + + Sbjct: 197 VETKPSILPRDAVASAGKTLCELFGLARELNSQAEGVEFGVDS-------------MIPE 243 Query: 257 KKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHI 78 IP I+ L L+ R+YNCLKR ++ + +LL +E++L+ I +F + + Sbjct: 244 SDEDLRIP-----IEDLGLSVRSYNCLKREGVNYVSELLGFSEQELLDIRNFGQKSADEV 298 Query: 77 WDTL 66 + L Sbjct: 299 QEKL 302
>RPOA_CORGL (Q8NSV2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 338 Score = 60.8 bits (146), Expect = 3e-09 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 5/170 (2%) Frame = -1 Query: 596 DLQIKRDRGY--QTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEIW 426 +L ++R RGY T + G P+D ++ PV V+Y + + + L +++ Sbjct: 137 ELIVERGRGYVPATVTATGGEIGRIPVDQIYSPVLKVSYKVEATRVEQRTDFDKLVIDVE 196 Query: 425 TNGSLTPKEALYEASRNLIDLF--LPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKK 252 T S+T ++AL A + L++LF L+ EG + + Sbjct: 197 TKNSITARDALASAGKTLVELFGLARELNIAAEGIEIGPSP------------------Q 238 Query: 251 NKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 + I + I+ L+ + R+YNCLKR +IHT+ +L + E DL+ I +F Sbjct: 239 ETEYIAAYSMPIEDLDFSVRSYNCLKREDIHTVGELAERAESDLLDIRNF 288
>RPOA_METCA (Q605D7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 60.8 bits (146), Expect = 3e-09 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 7/183 (3%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD----GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEI 429 L +++ RGYQ + + G+ +DA F P++ V+Y + S + L +E+ Sbjct: 143 LHVQKGRGYQPVANRAIEGDSAIGTLHLDASFSPIKKVSYVVESARVEQRTDLDRLVIEL 202 Query: 428 WTNGSLTPKEALYEASRNLIDLFLPFLH--AEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 TNG++ P+EA+ A+ N+++ L L E+ F E+ +F P L Sbjct: 203 QTNGTVQPEEAVKHAA-NILNQHLAILVDLKGEDLPLFGEDGPQFDPLLLHP-------- 253 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 +D LELT R+ NCLK NI + DL+ ++E DL++ + + I Sbjct: 254 ------------VDDLELTVRSANCLKAENIFYIGDLIQRSEADLLKTPNLGKKSLTEIK 301 Query: 74 DTL 66 D L Sbjct: 302 DVL 304
>RPOA_PSEPK (Q88QL1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 333 Score = 60.8 bits (146), Expect = 3e-09 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 7/183 (3%) Frame = -1 Query: 593 LQIKRDRGY------QTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFL 435 L + R RGY QT+ ++ G +DA F PVR + Y + + + + L + Sbjct: 143 LTVARGRGYEPADSRQTDEDESRSIGRLQLDASFSPVRRIAYVVENARVEQRTNLDKLVI 202 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 ++ TNG+L P+EA+ A+ L +++ +F + K P + + + Sbjct: 203 DLETNGTLDPEEAIRRAATIL----------QQQLAAFVDLKGDSEPVVVEQEDEID--- 249 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + I Sbjct: 250 ------PILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLTEIK 303 Query: 74 DTL 66 D L Sbjct: 304 DVL 306
>RPOA_CHLCV (Q824N1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 376 Score = 60.5 bits (145), Expect = 4e-09 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 5/169 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIW 426 L++ RGY T R +D +DA F PV VNY + G + + L L + Sbjct: 171 LRVAFGRGYSTSERIVLEDKGVNEIVLDAAFSPVVLVNYFVEDTRVGQDTDFDRLILHVE 230 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 T+G ++PKEAL +++ L F F +E+ FEE ++ K+NK Sbjct: 231 TDGRVSPKEALAFSTQILTKHFSIFEKMDEKKIVFEE--------------AISIEKENK 276 Query: 245 KGIPLNCIF-IDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 I + I+++EL+ R+ NCL ANI T+ +L+ E L++ +F Sbjct: 277 DDILHKLVLGINEIELSVRSTNCLSNANIETIGELVIMPEPRLLQFRNF 325
>RPOA_PASMU (P57941) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 60.5 bits (145), Expect = 4e-09 Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 9/185 (4%) Frame = -1 Query: 593 LQIKRDRGY-QTELRKNYQDGSYPI-----DAVFMPVRNVNYSIFSCGNGNEKHEI--LF 438 ++++R RGY R + QD PI DA + PV + Y++ ++ ++ L Sbjct: 144 IRVQRGRGYVPASARVHAQDEERPIGRLLVDACYSPVDRIAYNV-EAARVEQRTDLDKLV 202 Query: 437 LEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEE-EGTSFEENKNRFTPPLFTFQKRLTN 261 +E+ TNG++ P+EA+ A+ L + F+ + +E K F P L Sbjct: 203 IELETNGTIDPEEAIRRAATILAEQLDAFVDLRDVRQPEVKEEKPEFDPILLRP------ 256 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 +D LELT R+ NCLK IH + DL+ +TE +L++ + + Sbjct: 257 --------------VDDLELTVRSANCLKAETIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 Query: 80 IWDTL 66 I D L Sbjct: 303 IKDVL 307
>RPOA_MANSM (Q65QY0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 60.5 bits (145), Expect = 4e-09 Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 9/185 (4%) Frame = -1 Query: 593 LQIKRDRGY-QTELRKNYQDGSYPI-----DAVFMPVRNVNYSIFSCGNGNEKHEI--LF 438 ++++R RGY R + QD PI DA + PV + Y++ ++ ++ L Sbjct: 144 IRVQRGRGYVPASARVHAQDEERPIGRLLVDACYSPVDRIAYNV-EAARVEQRTDLDKLV 202 Query: 437 LEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEE-EGTSFEENKNRFTPPLFTFQKRLTN 261 +E+ TNG++ P+EA+ A+ L + F+ + +E K F P L Sbjct: 203 IELETNGAIDPEEAIRRAATILAEQLDAFVDLRDVRQPEVKEEKPEFDPILLRP------ 256 Query: 260 LKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKH 81 +D LELT R+ NCLK IH + DL+ +TE +L++ + + Sbjct: 257 --------------VDDLELTVRSANCLKAETIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 Query: 80 IWDTL 66 I D L Sbjct: 303 IKDVL 307
>RPOA_WOLTR (Q5GSW7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 355 Score = 60.5 bits (145), Expect = 4e-09 Identities = 37/146 (25%), Positives = 76/146 (52%), Gaps = 4/146 (2%) Frame = -1 Query: 527 PIDAVFMPVRNVNYSIFSCGNGN-EKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPF 351 P++A++ P+ V+Y + + G + L L + T+G+++P +A+ A+R L + PF Sbjct: 185 PVNALYSPINRVSYRVENSRVGQVTDKDKLILSVETDGTISPSQAVDSAARILQEQLQPF 244 Query: 350 LHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIF---IDQLELTSRTYNC 180 + ++ +++K + K + + I +D++EL+ R++NC Sbjct: 245 ISSD-----------------ISYKKSQVSSPSGYKDLGYDPILLRKVDEMELSVRSHNC 287 Query: 179 LKRANIHTLLDLLSKTEEDLMRIDSF 102 LK NI + DL+ KTE +++R +F Sbjct: 288 LKNENITYIGDLVQKTESEMLRTANF 313
>RPOA_CORDI (Q6NJ63) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 338 Score = 60.5 bits (145), Expect = 4e-09 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 3/168 (1%) Frame = -1 Query: 596 DLQIKRDRGY--QTELRKNYQDGSYPIDAVFMPVRNVNYSIFSCG-NGNEKHEILFLEIW 426 ++ ++R RGY T + G P+D ++ PV V+Y + + + L +++ Sbjct: 137 EMIVERGRGYVPATLYSGPAEIGRIPVDQIYSPVLKVSYKVEATRVEQRTDFDKLIIDVE 196 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 T S+ P++AL A + L++LF A E T+ E + +P + Sbjct: 197 TKNSMAPRDALASAGKTLVELFGL---ARELNTAAEGIEIGPSPQETEYIAAY------- 246 Query: 245 KGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 G+P I+ L + R+YNCLKR IHT+ +L TE DL+ I +F Sbjct: 247 -GMP-----IEDLNFSVRSYNCLKRQEIHTVGELAECTESDLLDIRNF 288
>RPOA_CHLAB (Q5L6Z9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 376 Score = 60.1 bits (144), Expect = 5e-09 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 5/169 (2%) Frame = -1 Query: 593 LQIKRDRGYQTELRKNYQD---GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFLEIW 426 L++ RGY T R +D +DA F PV VNY + G + + L L + Sbjct: 171 LRVAFGRGYTTSERIVLEDKGVNEIVLDAAFSPVVLVNYFVEDTRVGQDTDFDRLILHVE 230 Query: 425 TNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLKKNK 246 T+G ++PKEAL +++ L F F +E+ FEE ++ K+NK Sbjct: 231 TDGRVSPKEALAFSTQILTKHFSIFEKMDEKKIVFEE--------------AISLEKENK 276 Query: 245 KGIPLNCIF-IDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSF 102 I + I+++EL+ R+ NCL ANI T+ +L+ E L++ +F Sbjct: 277 DDILHKLVLGINEIELSVRSTNCLSNANIETIGELVIMPEPRLLQFRNF 325
>RPOA_PSEU2 (Q4ZMR8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 333 Score = 59.7 bits (143), Expect = 6e-09 Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 7/183 (3%) Frame = -1 Query: 593 LQIKRDRGYQ-TELRKNYQD-----GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFL 435 L + R RGY+ + R++ +D G +D+ F PVR + Y + + + + L + Sbjct: 143 LTVARGRGYEPADSRQSDEDESRSIGRLQLDSSFSPVRRIAYVVENARVEQRTNLDKLVI 202 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 ++ TNG+L P+EA+ A+ L +++ +F + K P + + + Sbjct: 203 DLETNGTLDPEEAIRRAATIL----------QQQLAAFVDLKGDSEPVVIEQEDEID--- 249 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + I Sbjct: 250 ------PILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLTEIK 303 Query: 74 DTL 66 D L Sbjct: 304 DVL 306
>RPOA_PSESM (Q889U6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 333 Score = 59.7 bits (143), Expect = 6e-09 Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 7/183 (3%) Frame = -1 Query: 593 LQIKRDRGYQ-TELRKNYQD-----GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFL 435 L + R RGY+ + R++ +D G +D+ F PVR + Y + + + + L + Sbjct: 143 LTVARGRGYEPADSRQSDEDESRSIGRLQLDSSFSPVRRIAYVVENARVEQRTNLDKLVI 202 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 ++ TNG+L P+EA+ A+ L +++ +F + K P + + + Sbjct: 203 DLETNGTLDPEEAIRRAATIL----------QQQLAAFVDLKGDSEPVVIEQEDEID--- 249 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + I Sbjct: 250 ------PILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLTEIK 303 Query: 74 DTL 66 D L Sbjct: 304 DVL 306
>RPOA_PSE14 (Q48D61) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 333 Score = 59.7 bits (143), Expect = 6e-09 Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 7/183 (3%) Frame = -1 Query: 593 LQIKRDRGYQ-TELRKNYQD-----GSYPIDAVFMPVRNVNYSIFSCGNGNEKH-EILFL 435 L + R RGY+ + R++ +D G +D+ F PVR + Y + + + + L + Sbjct: 143 LTVARGRGYEPADSRQSDEDESRSIGRLQLDSSFSPVRRIAYVVENARVEQRTNLDKLVI 202 Query: 434 EIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKRLTNLK 255 ++ TNG+L P+EA+ A+ L +++ +F + K P + + + Sbjct: 203 DLETNGTLDPEEAIRRAATIL----------QQQLAAFVDLKGDSEPVVIEQEDEID--- 249 Query: 254 KNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDRKHIW 75 P+ +D LELT R+ NCLK NI+ + DL+ +TE +L++ + + I Sbjct: 250 ------PILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLTEIK 303 Query: 74 DTL 66 D L Sbjct: 304 DVL 306 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,124,380 Number of Sequences: 219361 Number of extensions: 1404359 Number of successful extensions: 4117 Number of sequences better than 10.0: 337 Number of HSP's better than 10.0 without gapping: 3708 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3787 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
