ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26b22 |
|---|---|
| Clone Library Name | barley_pub |
>RARA_MOUSE (P11416) Retinoic acid receptor alpha (RAR-alpha)| Length = 462 Score = 35.4 bits (80), Expect = 0.077 Identities = 21/69 (30%), Positives = 29/69 (42%) Frame = -2 Query: 331 HQQQARFLLSPWTVSAVLGSASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSL 152 HQ +P + S+S+ E +P P PPP R++ CQD Y Y + Sbjct: 46 HQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCF---VCQDKSSGYHYGV 102 Query: 151 QFCSGCHCF 125 C GC F Sbjct: 103 SACEGCKGF 111
>RARA_HUMAN (P10276) Retinoic acid receptor alpha (RAR-alpha)| Length = 462 Score = 35.4 bits (80), Expect = 0.077 Identities = 21/69 (30%), Positives = 29/69 (42%) Frame = -2 Query: 331 HQQQARFLLSPWTVSAVLGSASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSL 152 HQ +P + S+S+ E +P P PPP R++ CQD Y Y + Sbjct: 46 HQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCF---VCQDKSSGYHYGV 102 Query: 151 QFCSGCHCF 125 C GC F Sbjct: 103 SACEGCKGF 111
>RARA_CHICK (Q90966) Retinoic acid receptor alpha (RAR-alpha)| Length = 460 Score = 35.4 bits (80), Expect = 0.077 Identities = 21/69 (30%), Positives = 28/69 (40%) Frame = -2 Query: 331 HQQQARFLLSPWTVSAVLGSASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSL 152 HQ +P + S S+ E +P P PPP R++ CQD Y Y + Sbjct: 46 HQLPVSGYSTPSPATVETQSTSSEEIVPSPPSPPPLPRIYKPCF---VCQDKSSGYHYGV 102 Query: 151 QFCSGCHCF 125 C GC F Sbjct: 103 SACEGCKGF 111
>RARA_CANFA (Q5FBR4) Retinoic acid receptor alpha (RAR-alpha)| Length = 462 Score = 35.4 bits (80), Expect = 0.077 Identities = 21/69 (30%), Positives = 29/69 (42%) Frame = -2 Query: 331 HQQQARFLLSPWTVSAVLGSASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSL 152 HQ +P + S+S+ E +P P PPP R++ CQD Y Y + Sbjct: 46 HQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCF---VCQDKSSGYHYGV 102 Query: 151 QFCSGCHCF 125 C GC F Sbjct: 103 SACEGCKGF 111
>RARA_XENLA (P51126) Retinoic acid receptor alpha (RAR-alpha)| Length = 458 Score = 35.0 bits (79), Expect = 0.10 Identities = 21/69 (30%), Positives = 28/69 (40%) Frame = -2 Query: 331 HQQQARFLLSPWTVSAVLGSASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSL 152 HQ +P + S S+ E +P P PPP R++ CQD Y Y + Sbjct: 46 HQPPLSGYSTPSPATIETQSTSSEEIVPSPPTPPPLPRIYKPCFV---CQDKSSGYHYGV 102 Query: 151 QFCSGCHCF 125 C GC F Sbjct: 103 SACEGCKGF 111
>RARA_NOTVI (P18514) Retinoic acid receptor alpha (RAR-alpha)| Length = 458 Score = 34.7 bits (78), Expect = 0.13 Identities = 21/60 (35%), Positives = 27/60 (45%) Frame = -2 Query: 304 SPWTVSAVLGSASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 SP T+ S S+ E +P P PPP R++ CQD Y Y + C GC F Sbjct: 56 SPATIETQ--STSSEEIVPSPPSPPPLPRIYKPCFV---CQDKSSGYHYGVSACEGCKGF 110
>RARA_FUGRU (Q9W5Z3) Retinoic acid receptor alpha (RAR-alpha)| Length = 447 Score = 34.3 bits (77), Expect = 0.17 Identities = 21/60 (35%), Positives = 27/60 (45%) Frame = -2 Query: 304 SPWTVSAVLGSASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 SP T+ S S+ E +P P PPP R++ CQD Y Y + C GC F Sbjct: 49 SPATIETQ--STSSEEIVPSPPSPPPPPRVYKPCFV---CQDKSSGYHYGVSACEGCKGF 103
>VE2_HPV04 (Q07849) Regulatory protein E2| Length = 402 Score = 32.7 bits (73), Expect = 0.50 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +1 Query: 277 QERQTRSKAKVETGPAAGGSGLKRRR-EGQTGGRAEEVPVEVEKGSGRRRGE 429 + + +S A T P G L+RRR EG++G + E P + +G GR GE Sbjct: 234 RRKPRKSDATSTTSPETEGVRLRRRRREGKSGPGSGETPRKRRRGGGRGGGE 285 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = +1 Query: 283 RQTRSKAKVETGPAAGGSGLKRRREGQTGGRAEEV---PVEVEKGSGRRRGE 429 R R + + ++GP +G + KRRR G GG E+ P E GS R+ E Sbjct: 254 RLRRRRREGKSGPGSGETPRKRRRGGGRGGGETELGSAPSPAEVGSRHRQVE 305
>RARB_COTJA (Q9W6B3) Retinoic acid receptor beta (RAR-beta)| Length = 455 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/60 (31%), Positives = 25/60 (41%) Frame = -2 Query: 304 SPWTVSAVLGSASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 +P S S S+ E +P P P P R++ CQD Y Y + C GC F Sbjct: 55 TPSPASVETQSTSSEELVPSPPSPLPPPRVYKPCFV---CQDKSSGYHYGVSACEGCKGF 111
>RARG2_BRARE (Q90273) Retinoic acid receptor gamma-2 (RAR-gamma-2) (Fragment)| Length = 367 Score = 30.8 bits (68), Expect = 1.9 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -2 Query: 274 SASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 S S+ E +P PPP R++ CQD Y Y + C GC F Sbjct: 54 STSSEEMVPSSPSPPPPPRVYKPCFV---CQDKSSGYHYGVSSCEGCKGF 100
>RARB_CHICK (P22448) Retinoic acid receptor beta (RAR-beta)| Length = 455 Score = 30.8 bits (68), Expect = 1.9 Identities = 21/60 (35%), Positives = 26/60 (43%) Frame = -2 Query: 304 SPWTVSAVLGSASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 SP TV S S+ E +P P P P R++ CQD Y Y + C GC F Sbjct: 57 SPATVETQ--STSSEELVPSPPSPLPPPRVYKPCFV---CQDKSSGYHYGVSACEGCKGF 111
>NFM_RABIT (P54938) Neurofilament triplet M protein (160 kDa neurofilament| protein) (Neurofilament medium polypeptide) (NF-M) (Fragment) Length = 644 Score = 30.8 bits (68), Expect = 1.9 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Frame = +1 Query: 262 QRRLSQERQTRSKAKVETGPAAGGS--GLKRRRE------GQTGGRAEEVPVEVEKGSGR 417 ++ L QE++ + KA E G GS G KR ++ G+ G+ EE P EKGSGR Sbjct: 494 EKPLQQEKE-KEKAGEEGGSEEEGSDQGSKRAKKEDIAVNGEGEGKEEEEPETKEKGSGR 552 Query: 418 RRGELVXXIG 447 + V G Sbjct: 553 EEEKGVVTNG 562
>V29K_TRVSY (P69473) 29 kDa protein| Length = 252 Score = 30.8 bits (68), Expect = 1.9 Identities = 21/63 (33%), Positives = 28/63 (44%) Frame = -2 Query: 214 HLLKIGKRGCQDXXIPYGYSLQFCSGCHCFSGAVLGVEVITQGARRANDFETNPSEYALG 35 ++L + K GC +P C G + FS V + V T RR N E N S+Y G Sbjct: 143 NVLDVWKVGCISEGVPV------CDGTYPFSIEVSLIWVATDSTRRLNVEELNSSDYIEG 196 Query: 34 MVT 26 T Sbjct: 197 DFT 199
>V29K_TRVPS (P69472) 29 kDa protein| Length = 252 Score = 30.8 bits (68), Expect = 1.9 Identities = 21/63 (33%), Positives = 28/63 (44%) Frame = -2 Query: 214 HLLKIGKRGCQDXXIPYGYSLQFCSGCHCFSGAVLGVEVITQGARRANDFETNPSEYALG 35 ++L + K GC +P C G + FS V + V T RR N E N S+Y G Sbjct: 143 NVLDVWKVGCISEGVPV------CDGTYPFSIEVSLIWVATDSTRRLNVEELNSSDYIEG 196 Query: 34 MVT 26 T Sbjct: 197 DFT 199
>RARG_BRARE (Q91392) Retinoic acid receptor gamma (RAR-gamma) (ZRAR gamma)| Length = 499 Score = 30.8 bits (68), Expect = 1.9 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -2 Query: 274 SASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 S S+ E +P PPP R++ CQD Y Y + C GC F Sbjct: 54 STSSEEMVPSSPSPPPPPRVYKPCFV---CQDKSSGYHYGVSSCEGCKGF 100
>V29K_TRVTC (P05074) 29 kDa protein (Fragment)| Length = 130 Score = 30.8 bits (68), Expect = 1.9 Identities = 21/63 (33%), Positives = 28/63 (44%) Frame = -2 Query: 214 HLLKIGKRGCQDXXIPYGYSLQFCSGCHCFSGAVLGVEVITQGARRANDFETNPSEYALG 35 ++L + K GC +P C G + FS V + V T RR N E N S+Y G Sbjct: 21 NVLDVWKVGCISEGVPV------CDGTYPFSIEVSLIWVATDSTRRLNVEELNSSDYIEG 74 Query: 34 MVT 26 T Sbjct: 75 DFT 77
>RARB_HUMAN (P10826) Retinoic acid receptor beta (RAR-beta) (RAR-epsilon)| (HBV-activated protein) Length = 455 Score = 30.4 bits (67), Expect = 2.5 Identities = 20/60 (33%), Positives = 26/60 (43%) Frame = -2 Query: 304 SPWTVSAVLGSASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 SP T+ S S+ E +P P P P R++ CQD Y Y + C GC F Sbjct: 57 SPATIETQ--STSSEELVPSPPSPLPPPRVYKPCFV---CQDKSSGYHYGVSACEGCKGF 111
>PURL_GEOKA (Q5L3D2) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 742 Score = 30.0 bits (66), Expect = 3.2 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +1 Query: 310 ETGPAAGGSGLKRRREGQTGGRAEEVPVEVEKGSGRR 420 E P GGS L++ EG+ G+A E+ +EVE R+ Sbjct: 585 EAKPEFGGSELQKWLEGRIFGKAPEIDLEVEASRQRQ 621
>RARB_MOUSE (P22605) Retinoic acid receptor beta (RAR-beta)| Length = 482 Score = 30.0 bits (66), Expect = 3.2 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -2 Query: 274 SASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 S S+ E +P P P P R++ CQD Y Y + C GC F Sbjct: 92 STSSEELVPSPPSPLPPPRVYKPCFV---CQDKSSGYHYGVSACEGCKGF 138
>RARB_NOTVI (P18515) Retinoic acid receptor beta (RAR-beta) (Fragment)| Length = 158 Score = 30.0 bits (66), Expect = 3.2 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -2 Query: 274 SASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 S S+ E +P P P P R++ CQD Y Y + C GC F Sbjct: 11 STSSEELVPSPPSPLPPPRVYKPCFV---CQDKSSGYHYGVSACEGCKGF 57
>RARG_NOTVI (P18516) Retinoic acid receptor gamma (RAR-gamma) (Retinoic acid| receptor delta) (RAR-delta) Length = 505 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = -2 Query: 295 TVSAVLGSASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 ++S S S+ E +P PPP R++ C D Y Y + C GC F Sbjct: 113 SLSVETQSTSSEEMVPSSPSPPPPPRVYKPCFV---CNDKSSGYHYGVSSCEGCKGF 166
>RARG1_MOUSE (P18911) Retinoic acid receptor gamma-A (RAR-gamma-A)| Length = 458 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = -2 Query: 295 TVSAVLGSASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 ++S S S+ E +P PPP R++ C D Y Y + C GC F Sbjct: 60 SLSVETQSTSSEEMVPSSPSPPPPPRVYKPCFV---CNDKSSGYHYGVSSCEGCKGF 113
>RARG1_HUMAN (P13631) Retinoic acid receptor gamma-1 (RAR-gamma-1)| Length = 454 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = -2 Query: 295 TVSAVLGSASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 ++S S S+ E +P PPP R++ C D Y Y + C GC F Sbjct: 60 SLSVETQSTSSEEMVPSSPSPPPPPRVYKPCFV---CNDKSSGYHYGVSSCEGCKGF 113
>RARG2_MOUSE (P20787) Retinoic acid receptor gamma-B (RAR-gamma-B)| Length = 447 Score = 28.9 bits (63), Expect = 7.2 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = -2 Query: 274 SASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 S S+ E +P PPP R++ C D Y Y + C GC F Sbjct: 56 STSSEEMVPSSPSPPPPPRVYKPCFV---CNDKSSGYHYGVSSCEGCKGF 102
>RARG2_HUMAN (P22932) Retinoic acid receptor gamma-2 (RAR-gamma-2)| Length = 443 Score = 28.9 bits (63), Expect = 7.2 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = -2 Query: 274 SASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 S S+ E +P PPP R++ C D Y Y + C GC F Sbjct: 56 STSSEEMVPSSPSPPPPPRVYKPCFV---CNDKSSGYHYGVSSCEGCKGF 102
>Y1707_THEMA (Q9X233) UPF0168 protein TM1707| Length = 156 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%) Frame = +1 Query: 307 VETGPAAGGSGLKRRREGQTGG-------RAEEVPVEVEKGSGRR 420 +++ P G+ ++RRRE + G R EE PV V K GRR Sbjct: 14 LDSRPTLDGTAIRRRRECSSCGKRFTTYERYEEAPVLVVKKDGRR 58
>VPS54_DROME (Q9VLC0) Vacuolar protein sorting protein 54 (Protein scattered)| Length = 940 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +1 Query: 307 VETGPAAGGSGLKRRREGQTGGRA 378 V+TGPAAG SG+++ GG A Sbjct: 14 VDTGPAAGNSGIRKLSTASVGGIA 37
>RARG_XENLA (P28699) Retinoic acid receptor gamma (RAR-gamma)| Length = 476 Score = 28.9 bits (63), Expect = 7.2 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = -2 Query: 274 SASAAEALPDPCRPPPTHRLHLLKIGKRGCQDXXIPYGYSLQFCSGCHCF 125 S S+ E +P PPP R++ C D Y Y + C GC F Sbjct: 87 STSSEEMVPSSPSPPPPPRVYKPCFV---CNDKSSGYHYGVSSCEGCKGF 133
>VE2_HPV65 (Q07851) Regulatory protein E2| Length = 402 Score = 28.9 bits (63), Expect = 7.2 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Frame = +1 Query: 247 PAALRQRRLSQERQTRSKAKVETGPAAGGSGLKRRREGQTGG---RAEEVPVEVEKGSGR 417 P + S R R + + ++GP G + KRRR G GG R E P E G Sbjct: 242 PTSTTSPETSGLRVRRGRRQRKSGPGPGETPSKRRRGGGRGGGETRLESAPSPGEVGIRH 301 Query: 418 RRGE 429 R E Sbjct: 302 RTVE 305
>RNF38_HUMAN (Q9H0F5) RING finger protein 38| Length = 515 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1 Query: 371 PPVCPSRLRFKPLPPAAGPVSTFALD 294 P + P L P+PPA GP +F LD Sbjct: 386 PSLLPYVLSMLPVPPAVGPTFSFELD 411
>RABE2_RAT (Q62835) Rab GTPase-binding effector protein 2 (Rabaptin-5beta)| (MP13 protein) Length = 554 Score = 28.5 bits (62), Expect = 9.4 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +1 Query: 274 SQERQTRSKAKVETGPAAGGSGLKRRREGQTGGRAEEVPVEVEKGSGRRRGE 429 +QER R A++ T +KR E G RAE++P +GS ++ + Sbjct: 340 AQERVQRQMAELATSHKCLSQEVKRLNEENRGLRAEQLPSSALQGSEQQEDQ 391
>T2_MOUSE (Q06666) Octapeptide-repeat protein T2| Length = 185 Score = 28.5 bits (62), Expect = 9.4 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = +1 Query: 253 ALRQRRLSQERQTRSKAKVETGPAAGGSGLKRRREGQTGGRAEEVPVEVEKGSGRRR 423 A RQR ERQ +A+ + G G ++ EG+ G +E E+G G+R+ Sbjct: 127 AERQRGREAERQRGREAEKQRGERQRGREVEAEAEGRGRGMRQEAEA-TEQGQGQRQ 182
>RNF38_MOUSE (Q8BI21) RING finger protein 38| Length = 518 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1 Query: 371 PPVCPSRLRFKPLPPAAGPVSTFALD 294 P + P L P+PPA GP +F LD Sbjct: 389 PSLLPYVLSMLPVPPAVGPTFSFELD 414 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,910,875 Number of Sequences: 219361 Number of extensions: 913977 Number of successful extensions: 3899 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3739 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3885 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
