ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26b22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK107724.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-E12, full insert sequence Length = 794 Score = 133 bits (67), Expect = 6e-28 Identities = 146/173 (84%) Strand = Plus / Minus Query: 67 aatcgttggcccttcttgccccctgagttattacttccaccccaagcactgccccagaaa 126 |||||||||| ||| |||| ||||| || ||| | ||| |||||||||| ||||||||| Sbjct: 433 aatcgttggcgctttgtgcctcctgaattgttattcccatcccaagcacttccccagaaa 374 Query: 127 aacagtgacatccagaacagaactgcaaagaatatccgtaaggtatccngnaatcttgac 186 ||||||| ||||||||||||||||||||||||||| |||| ||||| | |||||||| Sbjct: 373 aacagtgccatccagaacagaactgcaaagaatatgcgtatcctatcctgtaatcttgat 314 Query: 187 aacctctcttgccaatcttgaggagatggaggcggtgggtcggaggagggcgg 239 ||||||||||||||| | || ||||| | ||||| || || ||||||||||| Sbjct: 313 aacctctcttgccaaccgtggggagaccgtggcggcggctcagaggagggcgg 261
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 129 bits (65), Expect = 9e-27 Identities = 117/135 (86%) Strand = Plus / Minus Query: 67 aatcgttggcccttcttgccccctgagttattacttccaccccaagcactgccccagaaa 126 |||||||||| ||| |||| ||||| || ||| | ||| |||||||||| ||||||||| Sbjct: 16644910 aatcgttggcgctttgtgcctcctgaattgttattcccatcccaagcacttccccagaaa 16644851 Query: 127 aacagtgacatccagaacagaactgcaaagaatatccgtaaggtatccngnaatcttgac 186 ||||||| ||||||||||||||||||||||||||| |||| ||||| | |||||||| Sbjct: 16644850 aacagtgccatccagaacagaactgcaaagaatatgcgtatcctatcctgtaatcttgat 16644791 Query: 187 aacctctcttgccaa 201 ||||||||||||||| Sbjct: 16644790 aacctctcttgccaa 16644776 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 375 ggcggaggaggtgccggtggaggtggag 402 ||||||||||||| ||||||||||||| Sbjct: 40100079 ggcggaggaggtggtggtggaggtggag 40100052 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtgga 401 ||||||||||| |||||||||||| Sbjct: 1940340 ggaggaggtgcgggtggaggtgga 1940363
>dbj|AP004610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1109A06 Length = 171438 Score = 129 bits (65), Expect = 9e-27 Identities = 117/135 (86%) Strand = Plus / Minus Query: 67 aatcgttggcccttcttgccccctgagttattacttccaccccaagcactgccccagaaa 126 |||||||||| ||| |||| ||||| || ||| | ||| |||||||||| ||||||||| Sbjct: 74859 aatcgttggcgctttgtgcctcctgaattgttattcccatcccaagcacttccccagaaa 74800 Query: 127 aacagtgacatccagaacagaactgcaaagaatatccgtaaggtatccngnaatcttgac 186 ||||||| ||||||||||||||||||||||||||| |||| ||||| | |||||||| Sbjct: 74799 aacagtgccatccagaacagaactgcaaagaatatgcgtatcctatcctgtaatcttgat 74740 Query: 187 aacctctcttgccaa 201 ||||||||||||||| Sbjct: 74739 aacctctcttgccaa 74725
>gb|AC124397.5| Mus musculus BAC clone RP24-348J16 from chromosome 13, complete sequence Length = 191713 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 392 tggaggtggagaaggggagtggt 414 ||||||||||||||||||||||| Sbjct: 166153 tggaggtggagaaggggagtggt 166131
>gb|AC122881.4| Mus musculus BAC clone RP23-79J21 from 13, complete sequence Length = 221931 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 392 tggaggtggagaaggggagtggt 414 ||||||||||||||||||||||| Sbjct: 201493 tggaggtggagaaggggagtggt 201515
>gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-144f20, complete sequence Length = 132371 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggaggtg 399 |||||||||||||||||||||| Sbjct: 53509 ggaggaggtgccggtggaggtg 53488 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggagg 397 |||||||||||||||||||| Sbjct: 53341 ggaggaggtgccggtggagg 53322 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggagg 397 |||||||||||||||||||| Sbjct: 53119 ggaggaggtgccggtggagg 53100
>gb|AC093087.3| Homo sapiens BAC clone RP11-785H2 from 7, complete sequence Length = 123039 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 385 gtgccggtggaggtggagaaggggag 410 |||| ||||||||||||||||||||| Sbjct: 2818 gtgctggtggaggtggagaaggggag 2793
>gb|AC113292.6| Mus musculus chromosome 15, clone RP23-418M3, complete sequence Length = 218109 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 399 ggagaaggggagtggtaggaga 420 |||||||||||||||||||||| Sbjct: 198298 ggagaaggggagtggtaggaga 198277
>gb|AC144780.1| Pan troglodytes BAC clone RP43-2J12 from 7, complete sequence Length = 191540 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 385 gtgccggtggaggtggagaaggggag 410 |||| ||||||||||||||||||||| Sbjct: 94288 gtgctggtggaggtggagaaggggag 94313
>gb|AF012542.1| Emiliania huxleyi putative calcium binding protein (gpa) mRNA, complete cds Length = 1458 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 376 gcggaggaggtgccggtggagg 397 |||||||||||||||||||||| Sbjct: 648 gcggaggaggtgccggtggagg 669
>gb|BC085465.1| Danio rerio zgc:101886, mRNA (cDNA clone MGC:101886 IMAGE:7254092), complete cds Length = 2287 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 tcttgaggagatggaggcggt 222 ||||||||||||||||||||| Sbjct: 811 tcttgaggagatggaggcggt 791
>ref|XM_474637.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1674 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 gggcctgctgctggtggtagt 336 ||||||||||||||||||||| Sbjct: 410 gggcctgctgctggtggtagt 390
>ref|XM_463979.1| Oryza sativa (japonica cultivar-group), mRNA Length = 516 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtggag 402 ||||||||||| ||||||||||||| Sbjct: 258 ggaggaggtgcgggtggaggtggag 282
>gb|AC136970.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074L01, complete sequence Length = 115339 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 cggtggaggtggagaagggga 409 ||||||||||||||||||||| Sbjct: 96633 cggtggaggtggagaagggga 96653
>gb|AY099362.1| Drosophila melanogaster eyegone (eyg) mRNA, complete cds Length = 2654 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 ctgctgctggtggtagtggct 340 ||||||||||||||||||||| Sbjct: 1939 ctgctgctggtggtagtggct 1919
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence Length = 144144 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 gggcctgctgctggtggtagt 336 ||||||||||||||||||||| Sbjct: 54210 gggcctgctgctggtggtagt 54230
>gb|AC093438.2| Drosophila melanogaster 3L BAC RP98-26C20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167344 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 ctgctgctggtggtagtggct 340 ||||||||||||||||||||| Sbjct: 141628 ctgctgctggtggtagtggct 141648
>gb|AC117273.41| Papio anubis clone rp41-167h10, complete sequence Length = 184931 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 358 ggacagactggtgggagggcggagg 382 ||||||||||||||||||| ||||| Sbjct: 150705 ggacagactggtgggagggtggagg 150729
>gb|AC182463.3| Pan troglodytes BAC clone CH251-511B8 from chromosome 16, complete sequence Length = 194406 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 358 ggacagactggtgggagggcggagg 382 ||||||||||||||||||| ||||| Sbjct: 174124 ggacagactggtgggagggtggagg 174148
>ref|NM_079318.2| Drosophila melanogaster eyegone CG10488-RA, transcript variant A (eyg), mRNA Length = 2653 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 ctgctgctggtggtagtggct 340 ||||||||||||||||||||| Sbjct: 1939 ctgctgctggtggtagtggct 1919
>ref|NM_001014582.1| Drosophila melanogaster eyegone CG10488-RB, transcript variant B (eyg), mRNA Length = 2586 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 ctgctgctggtggtagtggct 340 ||||||||||||||||||||| Sbjct: 1872 ctgctgctggtggtagtggct 1852
>gb|AC091223.2| Drosophila melanogaster 3L BAC RP98-48G6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170988 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 ctgctgctggtggtagtggct 340 ||||||||||||||||||||| Sbjct: 32514 ctgctgctggtggtagtggct 32534
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 gggcctgctgctggtggtagt 336 ||||||||||||||||||||| Sbjct: 5077937 gggcctgctgctggtggtagt 5077957 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 375 ggcggaggaggtgccggtggaggtggag 402 ||||||||||||| ||||||||||||| Sbjct: 33737287 ggcggaggaggtggaggtggaggtggag 33737314
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 cggtggaggtggagaagggga 409 ||||||||||||||||||||| Sbjct: 1098351 cggtggaggtggagaagggga 1098371
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtggag 402 ||||||||||| ||||||||||||| Sbjct: 1450508 ggaggaggtgcgggtggaggtggag 1450532
>gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, complete sequence Length = 216264 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 358 ggacagactggtgggagggcggagg 382 ||||||||||||||||||| ||||| Sbjct: 82671 ggacagactggtgggagggtggagg 82695
>gb|AC013403.9| Homo sapiens BAC clone RP11-195B17 from 2, complete sequence Length = 159707 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 382 gaggtgccggtggaggtggagaagg 406 |||||||||| |||||||||||||| Sbjct: 42949 gaggtgccgggggaggtggagaagg 42973
>ref|NM_001007374.1| Danio rerio zgc:101886 (zgc:101886), mRNA Length = 2287 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 tcttgaggagatggaggcggt 222 ||||||||||||||||||||| Sbjct: 811 tcttgaggagatggaggcggt 791
>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0482F12 Length = 147735 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtggag 402 ||||||||||| ||||||||||||| Sbjct: 131780 ggaggaggtgcgggtggaggtggag 131804
>dbj|AB026636.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14A17 Length = 92620 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggt 398 ||||||||||||||||||||| Sbjct: 47169 ggaggaggtgccggtggaggt 47189
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0576F08 Length = 135314 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtggag 402 ||||||||||| ||||||||||||| Sbjct: 13929 ggaggaggtgcgggtggaggtggag 13953
>emb|X58338.1|ATGLYRP A.thaliana gene encoding a glycine-rich protein Length = 5500 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggt 398 ||||||||||||||||||||| Sbjct: 2984 ggaggaggtgccggtggaggt 3004
>gb|BT021470.1| Drosophila melanogaster AT09010 full insert cDNA Length = 2331 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 ctgctgctggtggtagtggct 340 ||||||||||||||||||||| Sbjct: 1551 ctgctgctggtggtagtggct 1531
>gb|AE003541.3| Drosophila melanogaster chromosome 3L, section 44 of 83 of the complete sequence Length = 265524 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 ctgctgctggtggtagtggct 340 ||||||||||||||||||||| Sbjct: 152666 ctgctgctggtggtagtggct 152686
>gb|AF091739.1|AF091739 Drosophila melanogaster Eyegone (eyg) mRNA, complete cds Length = 2655 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 ctgctgctggtggtagtggct 340 ||||||||||||||||||||| Sbjct: 1939 ctgctgctggtggtagtggct 1919
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 cggtggaggtggagaagggga 409 ||||||||||||||||||||| Sbjct: 1096072 cggtggaggtggagaagggga 1096092
>gb|U47094.1|DCU47094 Daucus carota 17 kDa heat-shock cognate mRNA, somatic embryo clone Gea41, partial cds Length = 687 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtggagaaggggag 410 |||||||||| ||||||||||||| ||||||| Sbjct: 206 ggaggaggtgaaggtggaggtggaggaggggag 238
>ref|XM_462734.2| Oryza sativa (japonica cultivar-group), mRNA Length = 834 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtgga 401 ||||||||||| |||||||||||| Sbjct: 329 ggaggaggtgcgggtggaggtgga 352
>ref|NM_189018.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1159 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 375 ggcggaggaggtgccggtggaggtggag 402 |||| |||||||| |||||||||||||| Sbjct: 494 ggcgaaggaggtggcggtggaggtggag 521
>ref|XM_463619.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3303 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 375 ggcggaggaggtgccggtggaggtggag 402 ||||||||||||| ||||||||||||| Sbjct: 79 ggcggaggaggtggtggtggaggtggag 106
>ref|NM_185520.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1203 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggagg 397 |||||||||||||||||||| Sbjct: 622 ggaggaggtgccggtggagg 641
>gb|BC077786.1| Xenopus laevis hypothetical protein LOC446221, mRNA (cDNA clone IMAGE:4970537), partial cds Length = 1851 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 379 gaggaggtgccggtggaggtggag 402 ||||||||||||||||||| |||| Sbjct: 1329 gaggaggtgccggtggaggaggag 1306
>ref|XM_422893.1| PREDICTED: Gallus gallus similar to Cyclic-AMP-dependent transcription factor ATF-7 (Activating transcription factor 7) (Transcription factor ATF-A) (LOC425101), partial mRNA Length = 2035 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtgga 401 |||||||| ||||||||||||||| Sbjct: 423 ggaggaggagccggtggaggtgga 446
>emb|CT009583.3| Pan troglodytes chromosome X BAC RP43-045P06, complete sequence Length = 175371 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 cccaagcactgccccagaaa 126 |||||||||||||||||||| Sbjct: 40762 cccaagcactgccccagaaa 40781
>emb|Z67990.1|CEF02D10 Caenorhabditis elegans Cosmid F02D10, complete sequence Length = 25359 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggaggtggagaag 405 |||||||| | ||||||||||||||||| Sbjct: 24083 ggaggaggaggcggtggaggtggagaag 24056
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 aaaccgggcctgctgctggt 330 |||||||||||||||||||| Sbjct: 3296123 aaaccgggcctgctgctggt 3296104
>emb|AL451107.6| Human DNA sequence from clone RP11-14C22 on chromosome 10 Contains the gene for a novel protein similar to lysozyme C-1 (1 4-beta-N-acylmuramidase C EC 3.2.1.17) (MGC33408), three novel genes and a supervillin pseudogene (SVIL), complete sequence Length = 172779 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 gccggtggaggtggagaaggggag 410 ||||| |||||||||||||||||| Sbjct: 8975 gccggaggaggtggagaaggggag 8952
>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02, complete sequence Length = 153623 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 375 ggcggaggaggtgccggtggaggtggag 402 ||||||||||||| ||||||||||||| Sbjct: 87730 ggcggaggaggtggaggtggaggtggag 87757
>emb|AL928834.15| Zebrafish DNA sequence from clone CH211-51E12 in linkage group 4 Contains the gene for a novel protein (zgc:56546), the gene for a novel protein similar to the Tctex-1 family, the gene for a novel protein similar to vertebrate tubby like protein 4 (TULP4), the gene for a novel protein similar to vertebrate mitochondrial ribosomal protein S10 (MRPS10), the 3' end of a novel gene, two novel genes and three CpG islands, complete sequence Length = 189764 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtgga 401 |||||||||| ||||||||||||| Sbjct: 185539 ggaggaggtggcggtggaggtgga 185562
>gb|AC150252.1| Unidentified bacterium clone zdt-48a5, complete sequence Length = 38838 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 ggcggcaagggtccggcagc 254 |||||||||||||||||||| Sbjct: 16565 ggcggcaagggtccggcagc 16584
>gb|AC093193.11| Homo sapiens Xp BAC RP11-607K23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 83001 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 cccaagcactgccccagaaa 126 |||||||||||||||||||| Sbjct: 41348 cccaagcactgccccagaaa 41329
>gb|AF331456.1|AF331456 Heterodera glycines chemosensory receptor gene, complete sequence Length = 7127 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tggtgggagggcggaggagg 385 |||||||||||||||||||| Sbjct: 4814 tggtgggagggcggaggagg 4833
>ref|XM_681132.1| PREDICTED: Danio rerio similar to si:ch211-51e12.7, transcript variant 1 (LOC563637), mRNA Length = 1547 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggaggtgga 401 |||||||||| ||||||||||||| Sbjct: 239 ggaggaggtggcggtggaggtgga 216
>ref|XM_703225.1| PREDICTED: Danio rerio similar to si:ch211-51e12.7, transcript variant 4 (LOC563637), mRNA Length = 1884 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggaggtgga 401 |||||||||| ||||||||||||| Sbjct: 576 ggaggaggtggcggtggaggtgga 553
>ref|XM_703224.1| PREDICTED: Danio rerio similar to si:ch211-51e12.7, transcript variant 3 (LOC563637), mRNA Length = 898 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggaggtgga 401 |||||||||| ||||||||||||| Sbjct: 569 ggaggaggtggcggtggaggtgga 546
>ref|XM_703223.1| PREDICTED: Danio rerio similar to si:ch211-51e12.7, transcript variant 2 (LOC563637), mRNA Length = 785 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggaggtgga 401 |||||||||| ||||||||||||| Sbjct: 528 ggaggaggtggcggtggaggtgga 505
>ref|XM_678095.1| PREDICTED: Danio rerio similar to si:ch211-51e12.7, transcript variant 1 (LOC556109), mRNA Length = 1546 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggaggtgga 401 |||||||||| ||||||||||||| Sbjct: 239 ggaggaggtggcggtggaggtgga 216
>ref|XM_701815.1| PREDICTED: Danio rerio similar to si:ch211-51e12.7, transcript variant 2 (LOC556109), mRNA Length = 1582 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggaggtgga 401 |||||||||| ||||||||||||| Sbjct: 275 ggaggaggtggcggtggaggtgga 252
>ref|XM_679914.1| PREDICTED: Danio rerio si:ch211-51e12.7, transcript variant 1 (si:ch211-51e12.7), mRNA Length = 1547 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggaggtgga 401 |||||||||| ||||||||||||| Sbjct: 239 ggaggaggtggcggtggaggtgga 216
>ref|XM_704710.1| PREDICTED: Danio rerio si:ch211-51e12.7, transcript variant 2 (si:ch211-51e12.7), mRNA Length = 1895 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggaggtgga 401 |||||||||| ||||||||||||| Sbjct: 587 ggaggaggtggcggtggaggtgga 564
>ref|XM_704712.1| PREDICTED: Danio rerio si:ch211-51e12.7, transcript variant 4 (si:ch211-51e12.7), mRNA Length = 898 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggaggtgga 401 |||||||||| ||||||||||||| Sbjct: 569 ggaggaggtggcggtggaggtgga 546
>ref|XM_704711.1| PREDICTED: Danio rerio si:ch211-51e12.7, transcript variant 3 (si:ch211-51e12.7), mRNA Length = 786 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggaggtgga 401 |||||||||| ||||||||||||| Sbjct: 528 ggaggaggtggcggtggaggtgga 505
>gb|AC159710.9| Mus musculus 10 BAC RP24-325N16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 204302 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 ctgctgctggtggtagtggc 339 |||||||||||||||||||| Sbjct: 101045 ctgctgctggtggtagtggc 101026
>gb|BC097530.1| Xenopus laevis hypothetical protein LOC446221, mRNA (cDNA clone MGC:114653 IMAGE:5440026), complete cds Length = 2325 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 379 gaggaggtgccggtggaggtggag 402 ||||||||||||||||||| |||| Sbjct: 1368 gaggaggtgccggtggaggaggag 1345
>ref|NM_077846.1| Caenorhabditis elegans COLlagen family member (col-183) (col-183) mRNA, complete cds Length = 951 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtggagaag 405 |||||||| | ||||||||||||||||| Sbjct: 289 ggaggaggaggcggtggaggtggagaag 316
>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence Length = 181577 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 375 ggcggaggaggtgccggtggaggtggag 402 ||||||||||||| ||||||||||||| Sbjct: 168466 ggcggaggaggtggaggtggaggtggag 168493
>gb|AY768941.1| Xenopus laevis enabled protein (Ena) mRNA, complete cds Length = 2173 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 379 gaggaggtgccggtggaggtggag 402 ||||||||||||||||||| |||| Sbjct: 1297 gaggaggtgccggtggaggaggag 1274
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 gagggcggaggaggtgccggtggaggtg 399 |||||||| |||||||||||||| |||| Sbjct: 22950931 gagggcggtggaggtgccggtggtggtg 22950904
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 375 ggcggaggaggtgccggtggaggtggag 402 |||| |||||||| |||||||||||||| Sbjct: 25636864 ggcgaaggaggtggcggtggaggtggag 25636891
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggagg 397 |||||||||||||||||||| Sbjct: 29215655 ggaggaggtgccggtggagg 29215636
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 375 ggcggaggaggtgccggtggaggtggag 402 ||||||||||||| ||||||||||||| Sbjct: 43163 ggcggaggaggtggtggtggaggtggag 43136
>gb|AC011520.3|AC011520 Homo sapiens chromosome 19 clone LLNLF-205H1, complete sequence Length = 42718 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 agaaggggagtggtaggaga 420 |||||||||||||||||||| Sbjct: 4917 agaaggggagtggtaggaga 4898
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0597G07 Length = 152928 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggagg 397 |||||||||||||||||||| Sbjct: 4344 ggaggaggtgccggtggagg 4325
>dbj|AP003816.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1165_F02 Length = 125993 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggagg 397 |||||||||||||||||||| Sbjct: 55729 ggaggaggtgccggtggagg 55710
>gb|AF013262.1|AF013262 Mus musculus lumican (Ldc) gene, complete cds Length = 7064 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 ctgctgctggtggtagtggc 339 |||||||||||||||||||| Sbjct: 619 ctgctgctggtggtagtggc 600
>dbj|AP003250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443D08 Length = 146670 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtgga 401 ||||||||||| |||||||||||| Sbjct: 2918 ggaggaggtgcgggtggaggtgga 2941
>gb|AC153862.8| Mus musculus 10 BAC RP23-353K11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 223830 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 ggtggaggtggagaagggga 409 |||||||||||||||||||| Sbjct: 143414 ggtggaggtggagaagggga 143433
>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0686C03 Length = 164529 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 375 ggcggaggaggtgccggtggaggtggag 402 |||| |||||||| |||||||||||||| Sbjct: 123555 ggcgaaggaggtggcggtggaggtggag 123582
>dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0700D12 Length = 145177 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 375 ggcggaggaggtgccggtggaggtggag 402 |||| |||||||| |||||||||||||| Sbjct: 14612 ggcgaaggaggtggcggtggaggtggag 14639
>dbj|AK120239.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044B08, full insert sequence Length = 2699 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 375 ggcggaggaggtgccggtggaggtggag 402 ||||||||||||| ||||||||||||| Sbjct: 117 ggcggaggaggtggaggtggaggtggag 90
>dbj|AK119599.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-E02, full insert sequence Length = 834 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtgga 401 ||||||||||| |||||||||||| Sbjct: 329 ggaggaggtgcgggtggaggtgga 352
>dbj|AK072516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131A13, full insert sequence Length = 1158 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 375 ggcggaggaggtgccggtggaggtggag 402 |||| |||||||| |||||||||||||| Sbjct: 494 ggcgaaggaggtggcggtggaggtggag 521
>dbj|AK065690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041H01, full insert sequence Length = 838 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtgga 401 ||||||||||| |||||||||||| Sbjct: 327 ggaggaggtgcgggtggaggtgga 350
>dbj|AK064849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H01, full insert sequence Length = 834 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtgga 401 ||||||||||| |||||||||||| Sbjct: 330 ggaggaggtgcgggtggaggtgga 353
>gb|AC132439.4| Mus musculus BAC clone RP23-234H10 from 6, complete sequence Length = 190308 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 399 ggagaaggggagtggtaggagacgaggg 426 ||||||||||||||| |||||| ||||| Sbjct: 119104 ggagaaggggagtgggaggagaggaggg 119131
>emb|BX890562.8| Zebrafish DNA sequence from clone CH211-222H17 in linkage group 4, complete sequence Length = 195554 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggaggtgga 401 |||||||||| ||||||||||||| Sbjct: 11703 ggaggaggtggcggtggaggtgga 11680
>gb|AC153637.11| Mus musculus 6 BAC RP23-313A2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226751 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 399 ggagaaggggagtggtaggagacgaggg 426 ||||||||||||||| |||||| ||||| Sbjct: 26448 ggagaaggggagtgggaggagaggaggg 26475
>dbj|AK062091.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-G11, full insert sequence Length = 863 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 378 ggaggaggtgccggtggaggtgga 401 ||||||||||| |||||||||||| Sbjct: 326 ggaggaggtgcgggtggaggtgga 349
>dbj|D45890.1|RICSPS1 Oryza sativa DNA for sucrose phosphate synthase, complete cds Length = 9181 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 375 ggcggaggaggtgccggtggaggtggag 402 ||||||||||||| ||||||||||||| Sbjct: 3252 ggcggaggaggtggtggtggaggtggag 3279
>gb|U33175.1|OSU33175 Oryza sativa sucrose phosphate synthase gene, complete cds Length = 7150 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 375 ggcggaggaggtgccggtggaggtggag 402 ||||||||||||| ||||||||||||| Sbjct: 1722 ggcggaggaggtggtggtggaggtggag 1749
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 gaggaggtgccggtggaggt 398 |||||||||||||||||||| Sbjct: 1983479 gaggaggtgccggtggaggt 1983460
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 gagggcggaggaggtgccggtggaggtg 399 |||||||| |||||||||||||| |||| Sbjct: 22879122 gagggcggtggaggtgccggtggtggtg 22879095
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 gagggcggaggaggtgccggtggaggtg 399 |||||||| |||||||||||||| |||| Sbjct: 60208 gagggcggtggaggtgccggtggtggtg 60181
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 372 gagggcggaggaggtgccggtggaggtg 399 |||||||| |||||||||||||| |||| Sbjct: 5914 gagggcggtggaggtgccggtggtggtg 5941
>gb|AC004780.1|AC004780 Homo sapiens chromosome 19, cosmid F17127, complete sequence Length = 37218 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 agaaggggagtggtaggaga 420 |||||||||||||||||||| Sbjct: 18530 agaaggggagtggtaggaga 18511
>gb|BC067724.1| Danio rerio cDNA clone IMAGE:6968712 Length = 1492 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 ggaggaggtgccggtggaggtgga 401 |||||||||| ||||||||||||| Sbjct: 522 ggaggaggtggcggtggaggtgga 499
>gb|AC000098.1|YUP8H12 Arabidopsis thaliana chromosome 1 YAC yUP8H12 complete sequence Length = 103576 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 375 ggcggaggaggtgccggtggaggtggag 402 |||||||||| || |||||||||||||| Sbjct: 97340 ggcggaggagttggcggtggaggtggag 97367 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,702,435 Number of Sequences: 3902068 Number of extensions: 3702435 Number of successful extensions: 87853 Number of sequences better than 10.0: 97 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86924 Number of HSP's gapped (non-prelim): 929 length of query: 476 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 454 effective length of database: 17,147,199,772 effective search space: 7784828696488 effective search space used: 7784828696488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
