ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26b21 |
|---|---|
| Clone Library Name | barley_pub |
>PLZ12_LUPPO (P16148) Protein PPLZ12| Length = 184 Score = 192 bits (489), Expect = 4e-49 Identities = 94/152 (61%), Positives = 122/152 (80%) Frame = -3 Query: 568 MSAYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMRVAANEKAEAEKIVQIKRAEGEAEA 389 M YG+ I L+VDI PD V++AMNEINAA RM++A+ K EAEKI+Q+KRAE EAEA Sbjct: 25 MGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQLASLYKGEAEKILQVKRAEAEAEA 84 Query: 388 KYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLITQYFDTMKEIGASSKS 209 KYL G+G+ARQRQAI DGLR+++L F+ V GT+AK+VMD+++ITQYFDT+K++G SSK+ Sbjct: 85 KYLGGVGVARQRQAITDGLRENILNFSHKVEGTSAKEVMDLIMITQYFDTIKDLGNSSKN 144 Query: 208 SAVFIPHGPGAVRDIATQIRDGLLQGQSASDN 113 + VFIPHGPG VRDI QIR+GL++ A N Sbjct: 145 TTVFIPHGPGHVRDIGEQIRNGLMESARAGIN 176
>Y692_METTH (O26788) Hypothetical protein MTH692| Length = 318 Score = 45.1 bits (105), Expect = 1e-04 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 12/135 (8%) Frame = -3 Query: 559 YGFEIVQTLIVDIEPDAHVKQAMNEINAAARMRVAANEKAEAEKIVQIKRAEGEAEAKYL 380 +G +V+ I IEP + +AM++ A RM+ AA +AE K +IKRAEG+ +A L Sbjct: 148 WGTRVVRVEIQRIEPPGDIVEAMSKQMKAERMKRAAILEAEGYKQSEIKRAEGDKQAAIL 207 Query: 379 SGLGIAR-----------QRQAIVDGLRDSVLG-FAVNVPGTTAKDVMDMVLITQYFDTM 236 G A + AI +G ++L F G D++ + +Y + + Sbjct: 208 EAEGKAEAIKKVADANKYREIAIAEGQAKAILSVFRAMHEGDPTNDIIAL----KYLEAL 263 Query: 235 KEIGASSKSSAVFIP 191 +++ A +++ + +P Sbjct: 264 EKV-ADGRATKILLP 277
>YBBK_SHIFL (P0AA56) Hypothetical protein ybbK| Length = 305 Score = 44.7 bits (104), Expect = 2e-04 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 13/151 (8%) Frame = -3 Query: 559 YGFEIVQTLIVDIEPDAHVKQAMNEINAAARMRVAANEKAEAEKIVQIKRAEGEAEAKYL 380 +G ++ + I D+ P A + +MN A R + A +AE + +I +AEGE +++ L Sbjct: 150 WGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQIL 209 Query: 379 SGLG---------IARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLITQYFDTMKEI 227 G AR+R A + ++ A+ A ++ + +Y + +++I Sbjct: 210 KAEGERQSAFLQAEARERSAEAEARATKMVSEAIASGDIQA---VNYFVAQKYTEALQQI 266 Query: 226 GASSKSSAVFIPHGP----GAVRDIATQIRD 146 G+SS S V +P G++ IA ++D Sbjct: 267 GSSSNSKVVMMPLEASSLMGSIAGIAELVKD 297
>YBBK_ECOLI (P0AA53) Hypothetical protein ybbK| Length = 305 Score = 44.7 bits (104), Expect = 2e-04 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 13/151 (8%) Frame = -3 Query: 559 YGFEIVQTLIVDIEPDAHVKQAMNEINAAARMRVAANEKAEAEKIVQIKRAEGEAEAKYL 380 +G ++ + I D+ P A + +MN A R + A +AE + +I +AEGE +++ L Sbjct: 150 WGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQIL 209 Query: 379 SGLG---------IARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLITQYFDTMKEI 227 G AR+R A + ++ A+ A ++ + +Y + +++I Sbjct: 210 KAEGERQSAFLQAEARERSAEAEARATKMVSEAIASGDIQA---VNYFVAQKYTEALQQI 266 Query: 226 GASSKSSAVFIPHGP----GAVRDIATQIRD 146 G+SS S V +P G++ IA ++D Sbjct: 267 GSSSNSKVVMMPLEASSLMGSIAGIAELVKD 297
>YBBK_ECOL6 (P0AA54) Hypothetical protein ybbK| Length = 305 Score = 44.7 bits (104), Expect = 2e-04 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 13/151 (8%) Frame = -3 Query: 559 YGFEIVQTLIVDIEPDAHVKQAMNEINAAARMRVAANEKAEAEKIVQIKRAEGEAEAKYL 380 +G ++ + I D+ P A + +MN A R + A +AE + +I +AEGE +++ L Sbjct: 150 WGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQIL 209 Query: 379 SGLG---------IARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLITQYFDTMKEI 227 G AR+R A + ++ A+ A ++ + +Y + +++I Sbjct: 210 KAEGERQSAFLQAEARERSAEAEARATKMVSEAIASGDIQA---VNYFVAQKYTEALQQI 266 Query: 226 GASSKSSAVFIPHGP----GAVRDIATQIRD 146 G+SS S V +P G++ IA ++D Sbjct: 267 GSSSNSKVVMMPLEASSLMGSIAGIAELVKD 297
>YBBK_ECO57 (P0AA55) Hypothetical protein ybbK| Length = 305 Score = 44.7 bits (104), Expect = 2e-04 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 13/151 (8%) Frame = -3 Query: 559 YGFEIVQTLIVDIEPDAHVKQAMNEINAAARMRVAANEKAEAEKIVQIKRAEGEAEAKYL 380 +G ++ + I D+ P A + +MN A R + A +AE + +I +AEGE +++ L Sbjct: 150 WGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQIL 209 Query: 379 SGLG---------IARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLITQYFDTMKEI 227 G AR+R A + ++ A+ A ++ + +Y + +++I Sbjct: 210 KAEGERQSAFLQAEARERSAEAEARATKMVSEAIASGDIQA---VNYFVAQKYTEALQQI 266 Query: 226 GASSKSSAVFIPHGP----GAVRDIATQIRD 146 G+SS S V +P G++ IA ++D Sbjct: 267 GSSSNSKVVMMPLEASSLMGSIAGIAELVKD 297
>CDD_VIBPA (Q87Q52) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase)| (CDA) Length = 295 Score = 34.7 bits (78), Expect = 0.20 Identities = 22/80 (27%), Positives = 40/80 (50%) Frame = -3 Query: 544 VQTLIVDIEPDAHVKQAMNEINAAARMRVAANEKAEAEKIVQIKRAEGEAEAKYLSGLGI 365 V+ + ++ P H +Q MNE++ A ++V E+ E + A G A+ SGL Sbjct: 119 VKDITINFSPCGHCRQFMNELSTAKELKVQLPERDEKSLHEYLPEAFGPADLGIESGLMA 178 Query: 364 ARQRQAIVDGLRDSVLGFAV 305 + Q + D +D+++ AV Sbjct: 179 EVKHQFVCDD-KDALIQQAV 197
>RL4_BACHD (Q9Z9L3) 50S ribosomal protein L4| Length = 207 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Frame = -3 Query: 466 MRVAANEKAEAEKIVQIKRAEGEAE-----AKYLSGLGIARQRQAIVDGLRDSVLGFAVN 302 ++ A + K +AE+IV ++ EA A LSGL + R+ + D+V A N Sbjct: 110 IKSALSSKVKAEEIVVLESLALEAPKTKEMASILSGLSVDRKALVVTADYNDNVALSARN 169 Query: 301 VPGTT 287 +PG T Sbjct: 170 IPGVT 174
>INT2_SALTI (P62592) Integrase/recombinase (E2 protein)| Length = 337 Score = 30.8 bits (68), Expect = 2.8 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Frame = -2 Query: 335 PEGQRPGLRSQC----AW---HHCKGRDGHGADHPILRYYERDRRVLQVLGGVHPPWPWR 177 PE P LR Q AW +GR G + R Y R G PW W Sbjct: 181 PESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPR--------AGHSWPWFWV 232 Query: 176 SARHRH-TDPR 147 A+H H TDPR Sbjct: 233 FAQHTHSTDPR 243
>INT2_PSEAE (P62591) Integrase/recombinase (E2 protein)| Length = 337 Score = 30.8 bits (68), Expect = 2.8 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Frame = -2 Query: 335 PEGQRPGLRSQC----AW---HHCKGRDGHGADHPILRYYERDRRVLQVLGGVHPPWPWR 177 PE P LR Q AW +GR G + R Y R G PW W Sbjct: 181 PESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPR--------AGHSWPWFWV 232 Query: 176 SARHRH-TDPR 147 A+H H TDPR Sbjct: 233 FAQHTHSTDPR 243
>INT2_ECOLI (P62590) Integrase/recombinase (E2 protein)| Length = 337 Score = 30.8 bits (68), Expect = 2.8 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Frame = -2 Query: 335 PEGQRPGLRSQC----AW---HHCKGRDGHGADHPILRYYERDRRVLQVLGGVHPPWPWR 177 PE P LR Q AW +GR G + R Y R G PW W Sbjct: 181 PESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPR--------AGHSWPWFWV 232 Query: 176 SARHRH-TDPR 147 A+H H TDPR Sbjct: 233 FAQHTHSTDPR 243
>Y1524_MYCBO (P63694) Hypothetical protein Mb1524| Length = 381 Score = 30.8 bits (68), Expect = 2.8 Identities = 17/64 (26%), Positives = 33/64 (51%) Frame = -3 Query: 559 YGFEIVQTLIVDIEPDAHVKQAMNEINAAARMRVAANEKAEAEKIVQIKRAEGEAEAKYL 380 +G + + + I+P ++ +M + A R + A AE + IK+AEG+ +A+ L Sbjct: 156 WGLRVARVELRSIDPPPSIQASMEKQMKADREKRAMILTAEGTREAAIKQAEGQKQAQIL 215 Query: 379 SGLG 368 + G Sbjct: 216 AAEG 219 Score = 29.6 bits (65), Expect = 6.3 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Frame = -3 Query: 514 DAHVKQAMNE----INAAARMRVAANEKAEAEKIVQIKRAEGEAEAKYLSGLGIAR 359 +A +KQA + I AA + AA AEA++ ++ RA+GE A YL G A+ Sbjct: 200 EAAIKQAEGQKQAQILAAEGAKQAAILAAEADRQSRMLRAQGERAAAYLQAQGQAK 255
>Y1488_MYCTU (P63693) Hypothetical protein Rv1488/MT1533.2| Length = 381 Score = 30.8 bits (68), Expect = 2.8 Identities = 17/64 (26%), Positives = 33/64 (51%) Frame = -3 Query: 559 YGFEIVQTLIVDIEPDAHVKQAMNEINAAARMRVAANEKAEAEKIVQIKRAEGEAEAKYL 380 +G + + + I+P ++ +M + A R + A AE + IK+AEG+ +A+ L Sbjct: 156 WGLRVARVELRSIDPPPSIQASMEKQMKADREKRAMILTAEGTREAAIKQAEGQKQAQIL 215 Query: 379 SGLG 368 + G Sbjct: 216 AAEG 219 Score = 29.6 bits (65), Expect = 6.3 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Frame = -3 Query: 514 DAHVKQAMNE----INAAARMRVAANEKAEAEKIVQIKRAEGEAEAKYLSGLGIAR 359 +A +KQA + I AA + AA AEA++ ++ RA+GE A YL G A+ Sbjct: 200 EAAIKQAEGQKQAQILAAEGAKQAAILAAEADRQSRMLRAQGERAAAYLQAQGQAK 255
>HFLC_SHIFL (P0ABC6) Protein hflC (EC 3.4.-.-)| Length = 334 Score = 30.4 bits (67), Expect = 3.7 Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 24/136 (17%) Frame = -3 Query: 568 MSAYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMRVAANEK------------------ 443 M+A G E+V I I V +A+ A R VA + Sbjct: 198 MAALGIEVVDVRIKQINLPTEVSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEV 257 Query: 442 ----AEAEKIVQIKRAEGEAEAKYLSGLGIARQRQ--AIVDGLRDSVLGFAVNVPGTTAK 281 AEAE+ +I R EG+AEA L ++ A + LR F+ N + Sbjct: 258 TRTLAEAERQGRIMRGEGDAEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGN------Q 311 Query: 280 DVMDMVLITQYFDTMK 233 DVM M + +F MK Sbjct: 312 DVMVMSPDSDFFRYMK 327
>HFLC_ECOLI (P0ABC3) Protein hflC (EC 3.4.-.-)| Length = 334 Score = 30.4 bits (67), Expect = 3.7 Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 24/136 (17%) Frame = -3 Query: 568 MSAYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMRVAANEK------------------ 443 M+A G E+V I I V +A+ A R VA + Sbjct: 198 MAALGIEVVDVRIKQINLPTEVSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEV 257 Query: 442 ----AEAEKIVQIKRAEGEAEAKYLSGLGIARQRQ--AIVDGLRDSVLGFAVNVPGTTAK 281 AEAE+ +I R EG+AEA L ++ A + LR F+ N + Sbjct: 258 TRTLAEAERQGRIMRGEGDAEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGN------Q 311 Query: 280 DVMDMVLITQYFDTMK 233 DVM M + +F MK Sbjct: 312 DVMVMSPDSDFFRYMK 327
>HFLC_ECOL6 (P0ABC4) Protein hflC (EC 3.4.-.-)| Length = 334 Score = 30.4 bits (67), Expect = 3.7 Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 24/136 (17%) Frame = -3 Query: 568 MSAYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMRVAANEK------------------ 443 M+A G E+V I I V +A+ A R VA + Sbjct: 198 MAALGIEVVDVRIKQINLPTEVSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEV 257 Query: 442 ----AEAEKIVQIKRAEGEAEAKYLSGLGIARQRQ--AIVDGLRDSVLGFAVNVPGTTAK 281 AEAE+ +I R EG+AEA L ++ A + LR F+ N + Sbjct: 258 TRTLAEAERQGRIMRGEGDAEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGN------Q 311 Query: 280 DVMDMVLITQYFDTMK 233 DVM M + +F MK Sbjct: 312 DVMVMSPDSDFFRYMK 327
>HFLC_ECO57 (P0ABC5) Protein hflC (EC 3.4.-.-)| Length = 334 Score = 30.4 bits (67), Expect = 3.7 Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 24/136 (17%) Frame = -3 Query: 568 MSAYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMRVAANEK------------------ 443 M+A G E+V I I V +A+ A R VA + Sbjct: 198 MAALGIEVVDVRIKQINLPTEVSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEV 257 Query: 442 ----AEAEKIVQIKRAEGEAEAKYLSGLGIARQRQ--AIVDGLRDSVLGFAVNVPGTTAK 281 AEAE+ +I R EG+AEA L ++ A + LR F+ N + Sbjct: 258 TRTLAEAERQGRIMRGEGDAEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGN------Q 311 Query: 280 DVMDMVLITQYFDTMK 233 DVM M + +F MK Sbjct: 312 DVMVMSPDSDFFRYMK 327
>STML2_HUMAN (Q9UJZ1) Stomatin-like protein 2 (SLP-2) (EPB72-like 2)| Length = 356 Score = 30.4 bits (67), Expect = 3.7 Identities = 28/110 (25%), Positives = 47/110 (42%) Frame = -3 Query: 484 INAAARMRVAANEKAEAEKIVQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFAV 305 IN A + A +EAEK QI +A GEA A + + +A + +R +L A+ Sbjct: 215 INVAEGKKQAQILASEAEKAEQINQAAGEASA-------VLAKAKAKAEAIR--ILAAAL 265 Query: 304 NVPGTTAKDVMDMVLITQYFDTMKEIGASSKSSAVFIPHGPGAVRDIATQ 155 A + + QY ++ + S+ + +P PG V + Q Sbjct: 266 TQHNGDA--AASLTVAEQYVSAFSKL--AKDSNTILLPSNPGDVTSMVAQ 311
>DHSO_BACHD (Q9Z9U1) Sorbitol dehydrogenase (EC 1.1.1.14) (L-iditol| 2-dehydrogenase) (Glucitol dehydrogenase) Length = 343 Score = 30.4 bits (67), Expect = 3.7 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Frame = +2 Query: 122 GRLALKKTVADLCGDVAHCARAMGD----EHRRGLGGRADLFHSIEVLGDQHHVHHV 280 G +T +CG ++C GD HR+GLG + D + V+ Q +HH+ Sbjct: 79 GDRVTSETTYSICGKCSYCTS--GDYNLCSHRKGLGNQQDGSFAKYVIARQESLHHL 133
>Y827_METJA (Q58237) Hypothetical protein MJ0827| Length = 199 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = -3 Query: 562 AYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMRVAANEKAEAEK 428 A+G I + + +I+P +K AM + A R++ AA +AE EK Sbjct: 153 AWGVRIEKVEVKEIDPPEDIKNAMAQQMKAERLKRAAILEAEGEK 197
>PUR5_PSEPK (Q88MA9) Phosphoribosylformylglycinamidine cyclo-ligase (EC| 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) Length = 352 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = +2 Query: 257 DQHHVHHVLCSGARHIDCEAQDAVPQAIHNGLALAGD 367 D+H +H VL G + C AQD V A+ N L AG+ Sbjct: 291 DEHEMHRVLNCGVGMVICVAQDQVEAAL-NELRAAGE 326
>TIP39_HUMAN (Q96A98) Tuberoinfundibular peptide of 39 residues precursor| (TIP39) Length = 100 Score = 29.6 bits (65), Expect = 6.3 Identities = 16/29 (55%), Positives = 17/29 (58%) Frame = +3 Query: 324 LSLRPSTMAWRWRAIPRPDRYLASASPSA 410 LSLRP AW A PRP R LA A +A Sbjct: 42 LSLRPPGRAWADPATPRPRRSLALADDAA 70
>TIP39_BOVIN (P0C171) Tuberoinfundibular peptide of 39 residues precursor| (TIP39) Length = 100 Score = 29.6 bits (65), Expect = 6.3 Identities = 16/29 (55%), Positives = 17/29 (58%) Frame = +3 Query: 324 LSLRPSTMAWRWRAIPRPDRYLASASPSA 410 LSLRP AW A PRP R LA A +A Sbjct: 42 LSLRPPGRAWADPATPRPRRSLALADDAA 70
>PO210_MOUSE (Q9QY81) Nuclear pore membrane glycoprotein 210 precursor (POM210)| (Nuclear pore protein gp210) Length = 1886 Score = 29.6 bits (65), Expect = 6.3 Identities = 21/89 (23%), Positives = 40/89 (44%) Frame = +3 Query: 144 PSRICVAMSRTAPGPWGMNTAEDLEDAPISFIVSKYWVISTMSITSFAVVPGTLTAKPRT 323 P + + R PGP+G + D S+ V + + ++ T+ ++ PR Sbjct: 1780 PVTVAFVLDRRGPGPYGASLLSHFLD---SYQVMFFTFFALLAGTAVTIIAYHTVCAPRE 1836 Query: 324 LSLRPSTMAWRWRAIPRPDRYLASASPSA 410 L+ S +A RA P+ + ++SP+A Sbjct: 1837 LA---SPLALTPRASPQHSPHYLASSPAA 1862
>YUAG_BACSU (O32076) Hypothetical protein yuaG| Length = 509 Score = 29.6 bits (65), Expect = 6.3 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Frame = -3 Query: 526 DIEPDAHVKQAMNEINAAARMRVAANEKAEAEKIVQIKRAE-------GEAEAKYLSGLG 368 + + + +K+A + +A A E AEAEKI Q+K AE +A A L Sbjct: 217 EADKETRIKRAEADKDAKKSELERATEIAEAEKINQLKMAEFRREQDTAKANADQAYDLE 276 Query: 367 IARQRQAIVD 338 AR RQ + + Sbjct: 277 TARARQQVTE 286 Score = 29.6 bits (65), Expect = 6.3 Identities = 19/61 (31%), Positives = 30/61 (49%) Frame = -3 Query: 568 MSAYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMRVAANEKAEAEKIVQIKRAEGEAEA 389 ++ G IV I D+ +++ + A R A AEA+K +IKRAE + +A Sbjct: 174 LAKMGLVIVSFTIKDVRDKNGYLESLGKPRIAQVKRDADIATAEADKETRIKRAEADKDA 233 Query: 388 K 386 K Sbjct: 234 K 234
>OPPD_BACSU (P24136) Oligopeptide transport ATP-binding protein oppD| Length = 358 Score = 29.3 bits (64), Expect = 8.2 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 3/135 (2%) Frame = -3 Query: 547 IVQTLIVDIEPDAHVKQAMNEI---NAAARMRVAANEKAEAEKIVQIKRAEGEAEAKYLS 377 I Q + + P V + + E+ + A E ++V I E Sbjct: 99 IFQDPMTSLNPTMKVGKQITEVLFKHEKISKEAAKKRAVELLELVGIPMPEKRVNQFPHE 158 Query: 376 GLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLITQYFDTMKEIGASSKSSAVF 197 G RQR I L + + P T +D+ + Q + MK++ +S +F Sbjct: 159 FSGGMRQRVVIAMALAANPKLLIADEPTTA----LDVTIQAQILELMKDLQKKIDTSIIF 214 Query: 196 IPHGPGAVRDIATQI 152 I H G V ++A ++ Sbjct: 215 ITHDLGVVANVADRV 229
>RL12_METTH (P05394) 50S ribosomal protein L12P ('A' type)|
Length = 101
Score = 29.3 bits (64), Expect = 8.2
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Frame = -3
Query: 568 MSAYGFEI----VQTLIVDIEPDAHVKQAMNEINAAARMRVAANEKA--EAEKIVQIKRA 407
+ A G E+ V+ LI +E D +++AM AA AA A EAE+ + +
Sbjct: 26 LEAAGAEVDDARVKALIAALE-DVDIEEAMETTAVAAAPAAAAAPAAAEEAEEEAEEEEE 84
Query: 406 EGEAEAKYLSGLG 368
E EAE + +GLG
Sbjct: 85 EEEAEEEAAAGLG 97
Database: uniprot_sprot.fasta
Posted date: May 25, 2006 5:36 PM
Number of letters in database: 80,573,946
Number of sequences in database: 219,361
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,136,473
Number of Sequences: 219361
Number of extensions: 1480837
Number of successful extensions: 5364
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 5204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5342
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)