ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25m19 |
|---|---|
| Clone Library Name | barley_pub |
>PSAK_HORVU (P36886) Photosystem I reaction center subunit psaK, chloroplast| precursor (Photosystem I subunit X) (PSI-K) (Light-harvesting complex I 7 kDa protein) Length = 131 Score = 115 bits (287), Expect = 4e-26 Identities = 57/59 (96%), Positives = 57/59 (96%) Frame = -1 Query: 188 NRKATPGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNTGVLDQXIG 12 NRKAT GLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNTGVLDQ IG Sbjct: 73 NRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNTGVLDQIIG 131
>PSAK_ARATH (Q9SUI5) Photosystem I reaction center subunit psaK, chloroplast| precursor (Photosystem I subunit X) (PSI-K) Length = 130 Score = 97.1 bits (240), Expect = 1e-20 Identities = 45/54 (83%), Positives = 50/54 (92%) Frame = -1 Query: 188 NRKATPGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNTGVL 27 NRKAT GL+LEAR+SGLQTGDPAGFTLADTLACG VGHI+GVG+VLGLKN G + Sbjct: 77 NRKATAGLRLEARDSGLQTGDPAGFTLADTLACGTVGHIIGVGVVLGLKNIGAI 130
>PSAK_MEDSA (Q9ZT05) Photosystem I reaction center subunit psaK, chloroplast| precursor (Photosystem I subunit X) (PSI-K) Length = 129 Score = 90.5 bits (223), Expect = 1e-18 Identities = 42/49 (85%), Positives = 46/49 (93%) Frame = -1 Query: 188 NRKATPGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLK 42 NRKAT GLKLE R+SGLQTGDPAGFTLADTLACG VGHI+GVG+VLGL+ Sbjct: 77 NRKATAGLKLETRDSGLQTGDPAGFTLADTLACGTVGHIIGVGVVLGLR 125
>PSAK_CHLRE (P14225) Photosystem I reaction center subunit psaK, chloroplast| precursor (Photosystem I subunit X) (PSI-K) (Light-harvesting complex I 8.4 kDa protein) (P37 protein) Length = 113 Score = 58.5 bits (140), Expect = 4e-09 Identities = 30/55 (54%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Frame = -1 Query: 185 RKATPGLKL--EARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNTGVL 27 + T GLKL +G+ + DPAGFT+ D LA GA GH +GVGIVLGLK G L Sbjct: 59 KNTTAGLKLVDSKNSAGVISNDPAGFTIVDVLAMGAAGHGLGVGIVLGLKGIGAL 113
>PSAG_TORRU (Q9SPM4) Photosystem I reaction center subunit V, chloroplast| precursor (PSI-G) Length = 112 Score = 40.8 bits (94), Expect = 0.001 Identities = 20/36 (55%), Positives = 24/36 (66%) Frame = -1 Query: 146 SGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKN 39 S L+T DPAGFTL D LA GA+GH +G I+ N Sbjct: 71 SMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATN 106
>PSAK1_SYNY3 (P72712) Photosystem I reaction center subunit psaK 1 precursor| (Photosystem I subunit X 1) Length = 86 Score = 38.1 bits (87), Expect = 0.006 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%) Frame = -1 Query: 164 KLEARESGLQTGDPA-----GFTLADTLACGAVGHIMGVGIVLGLKNTGVL 27 KL ++ + T P+ GF L L + GHI+G G++LGL N GVL Sbjct: 36 KLTIKQQNVGTPMPSSNFFGGFGLGAVLGTASFGHILGAGVILGLANMGVL 86
>PSAK_MASLA (Q9S3W9) Photosystem I reaction center subunit psaK precursor| (Photosystem I subunit X) Length = 86 Score = 35.4 bits (80), Expect = 0.041 Identities = 16/29 (55%), Positives = 19/29 (65%) Frame = -1 Query: 119 GFTLADTLACGAVGHIMGVGIVLGLKNTG 33 GF L LA A GHI+G G++LGL N G Sbjct: 56 GFGLPALLATTAFGHILGTGVILGLHNLG 84
>PSAK_ANAVT (P23317) Photosystem I reaction center subunit psaK precursor| (Photosystem I subunit X) (Light-harvesting 6.8 kDa polypeptide) Length = 86 Score = 35.4 bits (80), Expect = 0.041 Identities = 17/29 (58%), Positives = 19/29 (65%) Frame = -1 Query: 119 GFTLADTLACGAVGHIMGVGIVLGLKNTG 33 GF LA A GHI+GVGI+LGL N G Sbjct: 56 GFGAPALLATTAFGHILGVGIILGLHNLG 84
>PSAG_HORVU (Q00327) Photosystem I reaction center subunit V, chloroplast| precursor (PSI-G) (Photosystem I 9 kDa protein) Length = 143 Score = 35.0 bits (79), Expect = 0.053 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -1 Query: 140 LQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKN 39 L++ DP GF L D LA G++GHI+ I+ N Sbjct: 102 LKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSN 135
>PSAK1_ANASP (P58583) Photosystem I reaction center subunit psaK 1 precursor| (Photosystem I subunit X 1) Length = 86 Score = 35.0 bits (79), Expect = 0.053 Identities = 17/29 (58%), Positives = 19/29 (65%) Frame = -1 Query: 119 GFTLADTLACGAVGHIMGVGIVLGLKNTG 33 GF LA A GHI+GVG+VLGL N G Sbjct: 56 GFGAPALLATTAFGHILGVGLVLGLHNLG 84
>PSAK2_SYNY3 (P74564) Photosystem I reaction center subunit psaK 2 precursor| (Photosystem I subunit X 2) Length = 90 Score = 34.3 bits (77), Expect = 0.091 Identities = 15/30 (50%), Positives = 22/30 (73%) Frame = -1 Query: 116 FTLADTLACGAVGHIMGVGIVLGLKNTGVL 27 F L + LA + GHI+G G+VLGL ++G+L Sbjct: 61 FGLPELLATMSFGHILGAGMVLGLASSGIL 90
>PSAG_SPIOL (P12357) Photosystem I reaction center subunit V, chloroplast| precursor (PSI-G) (Photosystem I 9 kDa protein) Length = 167 Score = 34.3 bits (77), Expect = 0.091 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -1 Query: 140 LQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKN 39 L++ DP GF + D LA G++GHI+ I+ N Sbjct: 127 LKSNDPVGFNIVDVLAWGSIGHIVAYYILATASN 160
>PSAG_ARATH (Q9S7N7) Photosystem I reaction center subunit V, chloroplast| precursor (PSI-G) Length = 160 Score = 33.5 bits (75), Expect = 0.15 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -1 Query: 140 LQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKN 39 L++ DP GF + D LA G++GHI+ I+ N Sbjct: 119 LKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSN 152
>PSAK_PORPU (P51370) Photosystem I reaction center subunit psaK (Photosystem I| subunit X) (PSI-K) Length = 86 Score = 33.5 bits (75), Expect = 0.15 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = -1 Query: 119 GFTLADTLACGAVGHIMGVGIVLGLKNTGVL 27 GF L + LA ++GH++G +LGL N G++ Sbjct: 55 GFGLPELLATTSLGHVIGAASILGLSNVGLI 85
>PSAG_CHLRE (P14224) Photosystem I reaction center subunit V, chloroplast| precursor (PSI-G) (Light-harvesting complex I 10 kDa protein) (P35 protein) Length = 126 Score = 32.7 bits (73), Expect = 0.26 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -1 Query: 161 LEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIV 54 L+ + T DPAGF + D GA+GH +G ++ Sbjct: 80 LQKNSTIFATNDPAGFNIIDVAGWGALGHAVGFAVL 115
>PSAK_GRATL (Q6B8M4) Photosystem I reaction center subunit psaK (Photosystem I| subunit X) (PSI-K) Length = 86 Score = 31.6 bits (70), Expect = 0.59 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = -1 Query: 119 GFTLADTLACGAVGHIMGVGIVLGLKNTGVLD 24 GF L + LA ++GHI+G G ++GL + +++ Sbjct: 55 GFGLPELLATTSLGHIIGAGAIIGLNSIKIIN 86
>PSAK2_ANASP (Q8YLK8) Photosystem I reaction center subunit psaK 2 precursor| (Photosystem I subunit X 2) Length = 92 Score = 31.6 bits (70), Expect = 0.59 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = -1 Query: 113 TLADTLACGAVGHIMGVGIVLGLKNTGVL 27 ++A LA + GHI+GV VLGL N GV+ Sbjct: 64 SVATFLAAMSFGHIIGVAAVLGLTNLGVI 92
>PSAK_SYNEN (P0A426) Photosystem I reaction center subunit psaK precursor| (Photosystem I subunit X) (Light-harvesting 8.0 kDa polypeptide) Length = 83 Score = 30.8 bits (68), Expect = 1.0 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = -1 Query: 143 GLQTGDPA---GFTLADTLACGAVGHIMGVGIVLGLKNTGVL 27 GL PA GF L + LA + GH++ G+V GL+ G L Sbjct: 42 GLPIALPALFEGFGLPELLATTSFGHLLAAGVVSGLQYAGAL 83
>PSAK_SYNEL (P0A425) Photosystem I reaction center subunit psaK precursor| (Photosystem I subunit X) (Light-harvesting 8.0 kDa polypeptide) Length = 83 Score = 30.8 bits (68), Expect = 1.0 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = -1 Query: 143 GLQTGDPA---GFTLADTLACGAVGHIMGVGIVLGLKNTGVL 27 GL PA GF L + LA + GH++ G+V GL+ G L Sbjct: 42 GLPIALPALFEGFGLPELLATTSFGHLLAAGVVSGLQYAGAL 83
>PSAK_GUITH (O78444) Photosystem I reaction center subunit psaK (Photosystem I| subunit X) (PSI-K) Length = 87 Score = 30.0 bits (66), Expect = 1.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -1 Query: 134 TGDPAGFTLADTLACGAVGHIMGVGIVLGLKNTGVL 27 +G + F L + LA ++GHI+G G +LG G+L Sbjct: 51 SGSFSTFGLPELLATTSLGHIIGSGTILGFSYIGLL 86
>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced| PDZ-motif protein) (Protein cypher) (Protein oracle) Length = 723 Score = 29.6 bits (65), Expect = 2.2 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +1 Query: 91 HASVSASVKPAGSPVCSPDSRASSLSPGVA 180 HA+ +++ PA SPV +P +AS+ SP A Sbjct: 340 HAAAASAAGPAASPVENPRPQASAYSPAAA 369
>PSAK_GALSU (P31567) Photosystem I reaction center subunit psaK (Photosystem I| subunit X) (PSI-K) Length = 69 Score = 28.1 bits (61), Expect = 6.5 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 122 AGFTLADTLACGAVGHIMGVGIVLGLKNTGVL 27 A LA+ LA ++GHI+ VLGLK+ ++ Sbjct: 37 ANINLAELLASMSLGHIISSATVLGLKSLNLI 68
>PSAK_CYACA (O19902) Photosystem I reaction center subunit psaK (Photosystem I| subunit X) (PSI-K) Length = 84 Score = 28.1 bits (61), Expect = 6.5 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = -1 Query: 116 FTLADTLACGAVGHIMGVGIVLGLK 42 F + + LA ++GHI+GVG +GLK Sbjct: 53 FGVPELLATMSLGHIIGVGSTIGLK 77
>GATA6_RAT (P46153) Transcription factor GATA-6 (GATA-binding factor 6)| (DNA-binding protein GATA-GT2) Length = 441 Score = 27.7 bits (60), Expect = 8.5 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +1 Query: 94 ASVSASVKPAGSPVCSPDSRASSLSPGVAFL 186 A+ +A+ A SPV P +R S+ PG+ +L Sbjct: 28 AAAAAAAAAASSPVYVPTTRVGSMLPGLPYL 58
>GATA6_PIG (Q95JA5) Transcription factor GATA-6 (GATA-binding factor 6)| Length = 446 Score = 27.7 bits (60), Expect = 8.5 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +1 Query: 94 ASVSASVKPAGSPVCSPDSRASSLSPGVAFL 186 A+ +A+ A SPV P +R S+ PG+ +L Sbjct: 28 AAAAAAAAAASSPVYVPTTRVGSMLPGLPYL 58 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,290,377 Number of Sequences: 219361 Number of extensions: 220125 Number of successful extensions: 1016 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1011 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1016 length of database: 80,573,946 effective HSP length: 47 effective length of database: 70,263,979 effective search space used: 1686335496 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
