ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd25m19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L12707.1|BLYCPPHSYS Hordeum vulgare chloroplast photosystem I PSK-I subunit mRNA, complete cds Length = 688 Score = 359 bits (181), Expect = 2e-96 Identities = 186/188 (98%) Strand = Plus / Minus Query: 1 gggttattctagccgatnatctggtcgaggacgccggtgttcttgaggccgagcacgatg 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 575 gggttattctagccgatgatctggtcgaggacgccggtgttcttgaggccgagcacgatg 516 Query: 61 ccgacgcccatgatgtggccaacggcgccgcatgcgagcgtgtcggcgagcgtgaaaccg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 515 ccgacgcccatgatgtggccaacggcgccgcatgcgagcgtgtcggcgagcgtgaaaccg 456 Query: 121 gccgggtcgcccgtctgcagcccggactcgcgcgcctccagcttgagccccggcgtcgcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 455 gccgggtcgcccgtctgcagcccggactcgcgcgcctccagcttgagccccgccgtcgcc 396 Query: 181 ttcctgtt 188 |||||||| Sbjct: 395 ttcctgtt 388
>ref|XM_476636.1| Oryza sativa (japonica cultivar-group), mRNA Length = 599 Score = 230 bits (116), Expect = 1e-57 Identities = 163/179 (91%) Strand = Plus / Minus Query: 10 tagccgatnatctggtcgaggacgccggtgttcttgaggccgagcacgatgccgacgccc 69 |||||||| |||||||| ||||||||| |||||||||||||||| |||| |||||||||| Sbjct: 460 tagccgatgatctggtccaggacgccgatgttcttgaggccgaggacgacgccgacgccc 401 Query: 70 atgatgtggccaacggcgccgcatgcgagcgtgtcggcgagcgtgaaaccggccgggtcg 129 ||||||||||| ||||||||||| || |||||||||||||||||||| ||||| |||||| Sbjct: 400 atgatgtggccgacggcgccgcaggccagcgtgtcggcgagcgtgaacccggcggggtcg 341 Query: 130 cccgtctgcagcccggactcgcgcgcctccagcttgagccccggcgtcgccttcctgtt 188 || |||||||| ||||| ||||||||||||||||| ||||||| ||||| ||||||||| Sbjct: 340 ccggtctgcaggccggagtcgcgcgcctccagcttcagccccgccgtcgacttcctgtt 282
>gb|AY224448.1| Oryza sativa (japonica cultivar-group) isolate 23056 photosystem I protein-like protein mRNA, complete cds Length = 402 Score = 230 bits (116), Expect = 1e-57 Identities = 163/179 (91%) Strand = Plus / Minus Query: 10 tagccgatnatctggtcgaggacgccggtgttcttgaggccgagcacgatgccgacgccc 69 |||||||| |||||||| ||||||||| |||||||||||||||| |||| |||||||||| Sbjct: 401 tagccgatgatctggtccaggacgccgatgttcttgaggccgaggacgacgccgacgccc 342 Query: 70 atgatgtggccaacggcgccgcatgcgagcgtgtcggcgagcgtgaaaccggccgggtcg 129 ||||||||||| ||||||||||| || |||||||||||||||||||| ||||| |||||| Sbjct: 341 atgatgtggccgacggcgccgcaggccagcgtgtcggcgagcgtgaacccggcggggtcg 282 Query: 130 cccgtctgcagcccggactcgcgcgcctccagcttgagccccggcgtcgccttcctgtt 188 || |||||||| ||||| ||||||||||||||||| ||||||| ||||| ||||||||| Sbjct: 281 ccggtctgcaggccggagtcgcgcgcctccagcttcagccccgccgtcgacttcctgtt 223
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 230 bits (116), Expect = 1e-57 Identities = 163/179 (91%) Strand = Plus / Minus Query: 10 tagccgatnatctggtcgaggacgccggtgttcttgaggccgagcacgatgccgacgccc 69 |||||||| |||||||| ||||||||| |||||||||||||||| |||| |||||||||| Sbjct: 2579311 tagccgatgatctggtccaggacgccgatgttcttgaggccgaggacgacgccgacgccc 2579252 Query: 70 atgatgtggccaacggcgccgcatgcgagcgtgtcggcgagcgtgaaaccggccgggtcg 129 ||||||||||| ||||||||||| || |||||||||||||||||||| ||||| |||||| Sbjct: 2579251 atgatgtggccgacggcgccgcaggccagcgtgtcggcgagcgtgaacccggcggggtcg 2579192 Query: 130 cccgtctgcagcccggactcgcgcgcctccagcttgagccccggcgtcgccttcctgtt 188 || |||||||| ||||| ||||||||||||||||| ||||||| ||||| ||||||||| Sbjct: 2579191 ccggtctgcaggccggagtcgcgcgcctccagcttcagccccgccgtcgacttcctgtt 2579133
>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022E03 Length = 163032 Score = 230 bits (116), Expect = 1e-57 Identities = 163/179 (91%) Strand = Plus / Minus Query: 10 tagccgatnatctggtcgaggacgccggtgttcttgaggccgagcacgatgccgacgccc 69 |||||||| |||||||| ||||||||| |||||||||||||||| |||| |||||||||| Sbjct: 144291 tagccgatgatctggtccaggacgccgatgttcttgaggccgaggacgacgccgacgccc 144232 Query: 70 atgatgtggccaacggcgccgcatgcgagcgtgtcggcgagcgtgaaaccggccgggtcg 129 ||||||||||| ||||||||||| || |||||||||||||||||||| ||||| |||||| Sbjct: 144231 atgatgtggccgacggcgccgcaggccagcgtgtcggcgagcgtgaacccggcggggtcg 144172 Query: 130 cccgtctgcagcccggactcgcgcgcctccagcttgagccccggcgtcgccttcctgtt 188 || |||||||| ||||| ||||||||||||||||| ||||||| ||||| ||||||||| Sbjct: 144171 ccggtctgcaggccggagtcgcgcgcctccagcttcagccccgccgtcgacttcctgtt 144113
>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1027_G06 Length = 121885 Score = 230 bits (116), Expect = 1e-57 Identities = 163/179 (91%) Strand = Plus / Minus Query: 10 tagccgatnatctggtcgaggacgccggtgttcttgaggccgagcacgatgccgacgccc 69 |||||||| |||||||| ||||||||| |||||||||||||||| |||| |||||||||| Sbjct: 5029 tagccgatgatctggtccaggacgccgatgttcttgaggccgaggacgacgccgacgccc 4970 Query: 70 atgatgtggccaacggcgccgcatgcgagcgtgtcggcgagcgtgaaaccggccgggtcg 129 ||||||||||| ||||||||||| || |||||||||||||||||||| ||||| |||||| Sbjct: 4969 atgatgtggccgacggcgccgcaggccagcgtgtcggcgagcgtgaacccggcggggtcg 4910 Query: 130 cccgtctgcagcccggactcgcgcgcctccagcttgagccccggcgtcgccttcctgtt 188 || |||||||| ||||| ||||||||||||||||| ||||||| ||||| ||||||||| Sbjct: 4909 ccggtctgcaggccggagtcgcgcgcctccagcttcagccccgccgtcgacttcctgtt 4851
>dbj|AK058788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-E09, full insert sequence Length = 599 Score = 230 bits (116), Expect = 1e-57 Identities = 163/179 (91%) Strand = Plus / Minus Query: 10 tagccgatnatctggtcgaggacgccggtgttcttgaggccgagcacgatgccgacgccc 69 |||||||| |||||||| ||||||||| |||||||||||||||| |||| |||||||||| Sbjct: 460 tagccgatgatctggtccaggacgccgatgttcttgaggccgaggacgacgccgacgccc 401 Query: 70 atgatgtggccaacggcgccgcatgcgagcgtgtcggcgagcgtgaaaccggccgggtcg 129 ||||||||||| ||||||||||| || |||||||||||||||||||| ||||| |||||| Sbjct: 400 atgatgtggccgacggcgccgcaggccagcgtgtcggcgagcgtgaacccggcggggtcg 341 Query: 130 cccgtctgcagcccggactcgcgcgcctccagcttgagccccggcgtcgccttcctgtt 188 || |||||||| ||||| ||||||||||||||||| ||||||| ||||| ||||||||| Sbjct: 340 ccggtctgcaggccggagtcgcgcgcctccagcttcagccccgccgtcgacttcctgtt 282
>gb|AY103750.1| Zea mays PCO061381 mRNA sequence Length = 731 Score = 214 bits (108), Expect = 8e-53 Identities = 158/175 (90%) Strand = Plus / Minus Query: 8 tctagccgatnatctggtcgaggacgccggtgttcttgaggccgagcacgatgccgacgc 67 ||||||| || |||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct: 569 tctagccaatgatctggtcgagggcgccggtgttcttgagcccgagcacgatgccgacgc 510 Query: 68 ccatgatgtggccaacggcgccgcatgcgagcgtgtcggcgagcgtgaaaccggccgggt 127 | | ||||||||| ||||||||||| || |||||||||||||| ||||| ||||| |||| Sbjct: 509 cgaggatgtggccgacggcgccgcaggccagcgtgtcggcgagggtgaacccggcggggt 450 Query: 128 cgcccgtctgcagcccggactcgcgcgcctccagcttgagccccggcgtcgcctt 182 | ||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||| Sbjct: 449 cacccgtctgcaggccggagtcgcgcgcctccagcttcagccccgccgtcgcctt 395
>ref|XM_766439.1| Giardia lamblia ATCC 50803 axoneme-associated protein (GLP_630_3463_8346) partial mRNA Length = 4884 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 cggactcgcgcgcctccagct 163 ||||||||||||||||||||| Sbjct: 1162 cggactcgcgcgcctccagct 1142
>gb|AF400249.1| Giardia intestinalis axoneme-associated protein GASP-180 gene, complete cds Length = 5504 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 cggactcgcgcgcctccagct 163 ||||||||||||||||||||| Sbjct: 1650 cggactcgcgcgcctccagct 1630
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 0.69 Identities = 24/25 (96%) Strand = Plus / Minus Query: 48 gccgagcacgatgccgacgcccatg 72 ||||||||| ||||||||||||||| Sbjct: 637251 gccgagcacaatgccgacgcccatg 637227
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 106 gcgagcgtgaaaccggccggg 126 ||||||||||||||||||||| Sbjct: 5448237 gcgagcgtgaaaccggccggg 5448257
>gb|AE009047.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 73 of 256 of the complete sequence Length = 11654 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gaggccgagcacgatgccga 64 |||||||||||||||||||| Sbjct: 10635 gaggccgagcacgatgccga 10654
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 tgaggccgagcacgatgccg 63 |||||||||||||||||||| Sbjct: 2170959 tgaggccgagcacgatgccg 2170940
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gaggccgagcacgatgccga 64 |||||||||||||||||||| Sbjct: 805958 gaggccgagcacgatgccga 805977
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 cttgaggccgagcacgatgccgac 65 ||||||||||||||||| |||||| Sbjct: 8707785 cttgaggccgagcacgaggccgac 8707808
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 gagcacgatgccgacgccca 70 |||||||||||||||||||| Sbjct: 553633 gagcacgatgccgacgccca 553652
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cccggcgtcgccttcctgtt 188 |||||||||||||||||||| Sbjct: 263102 cccggcgtcgccttcctgtt 263083 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 905,724 Number of Sequences: 3902068 Number of extensions: 905724 Number of successful extensions: 65640 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64685 Number of HSP's gapped (non-prelim): 955 length of query: 215 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 193 effective length of database: 17,147,199,772 effective search space: 3309409555996 effective search space used: 3309409555996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
